Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86794 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47053 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47444 * 300.00349 * 3 2 1 6 6 H 1.48501 * 109.47209 * 60.00572 * 3 2 1 7 7 C 1.38810 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.47574 * 134.49564 * 180.02562 * 9 7 2 11 11 C 1.53946 * 86.12016 * 155.35417 * 10 9 7 12 12 N 1.46504 * 113.74026 * 137.95143 * 11 10 9 13 13 C 1.35311 * 125.86459 * 277.21479 * 12 11 10 14 14 C 1.35355 * 106.16940 * 180.19171 * 13 12 11 15 15 C 1.50703 * 126.74907 * 179.85700 * 14 13 12 16 16 N 1.46501 * 109.47249 * 94.71092 * 15 14 13 17 17 C 1.34777 * 120.00195 * 180.02562 * 16 15 14 18 18 O 1.21509 * 119.99692 * 359.97438 * 17 16 15 19 19 C 1.48146 * 120.00046 * 180.02562 * 17 16 15 20 20 C 1.39726 * 120.18431 * 180.27731 * 19 17 16 21 21 C 1.38818 * 117.90032 * 180.21582 * 20 19 17 22 22 C 1.38574 * 118.06807 * 359.50901 * 21 20 19 23 23 N 1.32168 * 120.06951 * 0.25594 * 22 21 20 24 24 N 1.28357 * 122.29793 * 359.97438 * 23 22 21 25 25 N 1.33771 * 106.49678 * 359.59418 * 14 13 12 26 26 N 1.28632 * 108.88619 * 0.25879 * 25 14 13 27 27 C 1.47812 * 134.45284 * 359.86411 * 9 7 2 28 28 H 0.96996 * 119.99253 * 359.97438 * 1 2 3 29 29 H 1.08999 * 113.77124 * 41.05220 * 10 9 7 30 30 H 1.09008 * 113.87165 * 269.66653 * 10 9 7 31 31 H 1.08993 * 113.73968 * 269.15493 * 11 10 9 32 32 H 1.07994 * 126.91691 * 0.04927 * 13 12 11 33 33 H 1.08998 * 109.47303 * 334.71089 * 15 14 13 34 34 H 1.09003 * 109.46840 * 214.70822 * 15 14 13 35 35 H 0.97007 * 119.99807 * 359.97438 * 16 15 14 36 36 H 1.08001 * 121.04448 * 359.97438 * 20 19 17 37 37 H 1.08002 * 120.96828 * 179.79196 * 21 20 19 38 38 H 1.08004 * 119.96768 * 180.27433 * 22 21 20 39 39 H 1.09004 * 113.77235 * 90.38115 * 27 9 7 40 40 H 1.09000 * 113.83856 * 318.91975 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7201 -3.8101 -0.0019 11 6 0.3466 -4.0832 0.6374 12 7 -0.3334 -5.2614 0.0934 13 6 -1.0704 -5.2982 -1.0407 14 6 -1.5119 -6.5720 -1.1622 15 6 -2.3791 -7.1245 -2.2640 16 7 -1.5321 -7.7267 -3.2966 17 6 -2.0934 -8.2874 -4.3861 18 8 -3.3020 -8.2940 -4.5115 19 6 -1.2370 -8.8969 -5.4300 20 6 -1.8146 -9.4742 -6.5638 21 6 -0.9678 -10.0357 -7.5098 22 6 0.3972 -9.9804 -7.2776 23 7 0.8594 -9.4098 -6.1786 24 7 0.0841 -8.8922 -5.2964 25 7 -1.0223 -7.2452 -0.1151 26 7 -0.3285 -6.4404 0.6098 27 6 -0.1057 -2.7571 0.0001 28 1 -0.4849 0.8401 0.0004 29 1 2.5619 -4.0327 0.6537 30 1 1.8332 -4.2363 -0.9988 31 1 0.3583 -4.0647 1.7271 32 1 -1.2686 -4.4762 -1.7125 33 1 -2.9680 -6.3185 -2.7016 34 1 -3.0475 -7.8821 -1.8549 35 1 -0.5673 -7.7211 -3.1966 36 1 -2.8861 -9.4867 -6.6979 37 1 -1.3613 -10.4980 -8.4030 38 1 1.0841 -10.4037 -7.9955 39 1 -0.5312 -2.8713 -0.9969 40 1 -0.7188 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094330744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = 189.583534 kcal Electronic energy + Delta-G solvation = -26224.947171 eV Core-core repulsion = 22273.234334 eV Total energy + Delta-G solvation = -3951.712837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.07769 -41.54231 -39.55993 -38.36053 -35.46173 -33.68332 -33.45515 -33.12172 -31.96142 -31.18941 -27.99293 -27.34389 -25.45850 -25.18713 -24.86812 -24.36764 -21.95241 -21.48269 -21.06145 -19.63458 -18.83158 -17.83370 -17.38291 -17.11133 -16.68344 -16.29979 -15.95161 -15.63343 -15.17616 -15.07016 -14.93887 -14.56605 -14.10886 -14.07929 -13.62655 -13.43640 -13.12918 -12.92252 -12.24328 -12.10637 -11.95652 -11.84551 -11.39668 -11.18391 -10.98836 -10.95399 -10.78200 -10.55748 -10.52962 -10.47718 -10.23140 -10.20767 -9.89493 -9.56088 -9.31705 -9.13201 -9.06229 -7.25738 -6.05038 -3.40185 0.02330 0.29192 1.79900 2.32351 2.33961 2.64221 3.02688 3.26011 3.26471 3.32121 3.34270 3.52575 3.97202 4.16583 4.21759 4.23383 4.32964 4.49824 4.64553 4.70833 4.74680 4.90002 5.12559 5.20070 5.21223 5.37274 5.40438 5.45824 5.57617 5.61246 5.71861 6.05942 6.09075 6.12166 6.14782 6.29478 6.53709 6.79598 7.02958 7.16452 7.18437 7.67687 7.79082 8.12334 8.73332 8.75619 9.41663 10.19202 11.12348 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.002366 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.322242 B =11829.063040 C =12691.720665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.002 4.002 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.230 4.230 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.264 5.264 13 C -0.012 4.012 14 C -0.066 4.066 15 C 0.214 3.786 16 N -0.698 5.698 17 C 0.577 3.423 18 O -0.529 6.529 19 C 0.026 3.974 20 C -0.065 4.065 21 C -0.122 4.122 22 C 0.054 3.946 23 N -0.239 5.239 24 N -0.208 5.208 25 N -0.265 5.265 26 N -0.087 5.087 27 C 0.164 3.836 28 H 0.258 0.742 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.132 0.868 32 H 0.191 0.809 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.415 0.585 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.179 0.821 39 H 0.041 0.959 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -17.743 -13.117 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.357 4.357 8 H 0.106 0.894 9 N -0.326 5.326 10 C -0.008 4.008 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.166 4.166 14 C -0.205 4.205 15 C 0.089 3.911 16 N -0.350 5.350 17 C 0.360 3.640 18 O -0.405 6.405 19 C -0.120 4.120 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.108 4.108 23 N -0.082 5.082 24 N -0.055 5.055 25 N -0.132 5.132 26 N -0.066 5.066 27 C 0.037 3.963 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.150 0.850 32 H 0.208 0.792 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.252 0.748 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.196 0.804 39 H 0.059 0.941 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.112 -17.775 -11.029 21.149 hybrid contribution -0.586 1.284 -1.836 2.315 sum -3.698 -16.492 -12.864 21.240 Atomic orbital electron populations 1.69776 1.05159 1.26017 1.55579 1.24857 0.95803 0.97939 1.01357 0.85940 0.78801 0.82896 0.77466 1.20204 1.21449 1.21379 1.19055 0.90464 0.80958 1.45249 0.89429 1.45682 1.01613 0.99390 1.85874 1.22942 0.93416 0.86564 0.97849 1.25291 0.95496 0.80570 1.01131 1.47914 1.31937 1.09857 1.15965 1.23504 0.99334 1.00449 0.93276 1.21638 1.07290 0.91893 0.99638 1.19384 0.90087 0.98150 0.83431 1.45932 1.11993 1.57160 1.19893 1.17492 0.86753 0.78571 0.81225 1.90815 1.13210 1.58597 1.77879 1.22859 0.93367 0.99423 0.96340 1.22466 1.03231 0.92184 0.91570 1.22484 0.94213 0.98038 1.00382 1.24568 0.95347 0.94631 0.96263 1.73195 1.29402 1.05771 0.99805 1.73271 1.02081 1.09480 1.20712 1.75018 1.09203 1.25410 1.03547 1.78274 1.18423 0.88629 1.21289 1.22744 0.89417 0.86205 0.97946 0.93169 0.91930 0.93839 0.85003 0.79158 0.89085 0.89225 0.74829 0.81836 0.82345 0.80417 0.94097 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.14 11.39 55.49 0.63 -24.51 16 2 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 8 H 0.09 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -13.89 3.70 -177.88 -0.66 -14.55 16 10 C 0.12 2.24 8.74 -2.97 -0.03 2.21 16 11 C 0.08 1.34 5.13 -70.15 -0.36 0.98 16 12 N -0.26 -4.35 3.54 -56.31 -0.20 -4.55 16 13 C -0.01 -0.17 10.72 -17.05 -0.18 -0.35 16 14 C -0.07 -0.93 6.62 -82.77 -0.55 -1.48 16 15 C 0.21 2.52 6.23 -5.19 -0.03 2.49 16 16 N -0.70 -8.23 5.54 -62.33 -0.35 -8.58 16 17 C 0.58 6.94 7.82 -12.19 -0.10 6.84 16 18 O -0.53 -7.32 16.39 5.36 0.09 -7.23 16 19 C 0.03 0.28 6.83 -82.83 -0.57 -0.28 16 20 C -0.07 -0.49 9.73 -38.81 -0.38 -0.87 16 21 C -0.12 -0.62 10.20 -39.24 -0.40 -1.02 16 22 C 0.05 0.35 11.31 -17.28 -0.20 0.15 16 23 N -0.24 -2.55 11.51 30.58 0.35 -2.19 16 24 N -0.21 -2.46 10.75 33.32 0.36 -2.10 16 25 N -0.27 -4.46 12.41 33.29 0.41 -4.04 16 26 N -0.09 -1.53 13.16 60.35 0.79 -0.74 16 27 C 0.16 3.36 6.90 -2.85 -0.02 3.34 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 32 H 0.19 2.44 6.74 -52.49 -0.35 2.09 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.42 4.97 7.82 -40.82 -0.32 4.65 16 36 H 0.16 1.01 7.72 -52.49 -0.41 0.60 16 37 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 38 H 0.18 0.48 8.06 -52.48 -0.42 0.05 16 39 H 0.04 0.82 6.31 -51.93 -0.33 0.49 16 40 H 0.09 2.09 7.16 -51.93 -0.37 1.72 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -32.35 354.42 -5.59 -37.94 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.28 Total: 3.71 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -3.06 Total: 5.73 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 1.35 Total: -61.26 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.35 -5.59 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094330744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.524 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds