Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47469 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.47023 * 30.00471 * 3 2 1 6 6 H 1.48511 * 109.46888 * 149.99931 * 3 2 1 7 7 C 1.38806 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99938 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.47580 * 134.49703 * 180.02562 * 9 7 2 11 11 C 1.53942 * 86.11756 * 155.36040 * 10 9 7 12 12 N 1.46508 * 113.74099 * 137.95478 * 11 10 9 13 13 C 1.46858 * 124.34215 * 119.97496 * 12 11 10 14 14 C 1.54470 * 105.42616 * 197.02240 * 13 12 11 15 15 H 1.09002 * 110.96910 * 216.44376 * 14 13 12 16 16 N 1.46499 * 110.97231 * 92.71419 * 14 13 12 17 17 C 1.34784 * 119.99971 * 158.08874 * 16 14 13 18 18 O 1.21274 * 119.99897 * 359.72827 * 17 16 14 19 19 C 1.50695 * 119.99635 * 179.97438 * 17 16 14 20 20 H 1.08994 * 115.55340 * 34.33159 * 19 17 16 21 21 C 1.53003 * 117.49574 * 179.97438 * 19 17 16 22 22 C 1.53000 * 59.99973 * 107.49331 * 21 19 17 23 23 F 1.39901 * 117.49700 * 252.51205 * 22 21 19 24 24 F 1.39895 * 117.50172 * 107.48962 * 22 21 19 25 25 C 1.54631 * 101.79806 * 334.57628 * 14 13 12 26 26 C 1.34415 * 124.34834 * 299.97443 * 12 11 10 27 27 O 1.21281 * 124.94274 * 359.62312 * 26 12 11 28 28 C 1.47583 * 134.49036 * 0.02562 * 9 7 2 29 29 H 0.97009 * 119.99549 * 359.97438 * 1 2 3 30 30 H 1.08996 * 113.76746 * 41.05652 * 10 9 7 31 31 H 1.09006 * 113.76750 * 269.66180 * 10 9 7 32 32 H 1.08997 * 113.74051 * 269.15421 * 11 10 9 33 33 H 1.09003 * 110.25655 * 78.03820 * 13 12 11 34 34 H 1.09006 * 110.27621 * 316.01006 * 13 12 11 35 35 H 0.96999 * 119.99984 * 338.08722 * 16 14 13 36 36 H 1.08998 * 117.50168 * 214.97623 * 21 19 17 37 37 H 1.08998 * 117.49849 * 359.97438 * 21 19 17 38 38 H 1.08997 * 110.48720 * 143.50054 * 25 14 13 39 39 H 1.08999 * 110.48561 * 266.14153 * 25 14 13 40 40 H 1.09007 * 113.77064 * 90.33778 * 28 9 7 41 41 H 1.08996 * 113.76983 * 318.94036 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2021 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7199 -3.8101 -0.0005 11 6 0.3468 -4.0829 0.6398 12 7 -0.3336 -5.2613 0.0969 13 6 -0.7257 -6.4316 0.8928 14 6 -0.9905 -7.5559 -0.1328 15 1 -1.8247 -8.1828 0.1824 16 7 0.2138 -8.3611 -0.3508 17 6 0.1081 -9.6140 -0.8362 18 8 -0.9843 -10.0766 -1.0878 19 6 1.3470 -10.4420 -1.0609 20 1 2.1546 -10.2833 -0.3463 21 6 1.1607 -11.8566 -1.6132 22 6 1.7344 -10.7557 -2.5075 23 9 0.9112 -10.2518 -3.5203 24 9 3.0983 -10.8163 -2.8123 25 6 -1.3533 -6.7485 -1.4006 26 6 -0.6791 -5.4102 -1.1936 27 8 -0.4789 -4.5910 -2.0652 28 6 -0.1034 -2.7573 -0.0005 29 1 -0.4850 0.8402 0.0004 30 1 2.5622 -4.0324 0.6546 31 1 1.8317 -4.2351 -0.9981 32 1 0.3593 -4.0638 1.7295 33 1 -1.6319 -6.2164 1.4591 34 1 0.0820 -6.7180 1.5665 35 1 1.0873 -7.9925 -0.1458 36 1 1.8461 -12.6282 -1.2626 37 1 0.1420 -12.1885 -1.8136 38 1 -0.9609 -7.2397 -2.2910 39 1 -2.4334 -6.6237 -1.4773 40 1 -0.5273 -2.8730 -0.9981 41 1 -0.7170 -2.1390 0.6547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094735371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -59.485682 kcal Electronic energy + Delta-G solvation = -28325.501945 eV Core-core repulsion = 23880.006718 eV Total energy + Delta-G solvation = -4445.495227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.12015 -47.79107 -40.91848 -39.81748 -37.38888 -36.62108 -35.87026 -34.09415 -32.20808 -30.51762 -27.67812 -27.27263 -25.20443 -24.75666 -23.42869 -23.02494 -21.71456 -20.88790 -20.36209 -18.78200 -18.34195 -17.75108 -17.20145 -16.77633 -16.59821 -16.31773 -16.25216 -15.37610 -14.96657 -14.86126 -14.61417 -14.41687 -14.22528 -14.03764 -13.93753 -13.90466 -13.54724 -13.43627 -12.97831 -12.84261 -12.61142 -11.98028 -11.90929 -11.78769 -11.71020 -11.43829 -11.38287 -10.86285 -10.77297 -10.71207 -10.33764 -10.20003 -10.00303 -9.72143 -9.51996 -9.21082 -8.66584 -8.22106 -6.82879 -5.73415 -3.05694 1.66421 2.40659 2.58775 2.87716 2.92691 3.21140 3.41676 3.46558 3.47897 3.63651 3.85324 4.07861 4.18081 4.31734 4.39268 4.50152 4.69039 4.89001 4.97015 5.02137 5.22000 5.26345 5.31111 5.36408 5.48704 5.52463 5.62429 5.67443 5.82320 6.03930 6.25206 6.47892 6.54334 6.84411 6.97852 7.28026 7.46623 7.57932 7.63101 7.68303 8.00315 8.54052 9.07325 9.73421 10.62165 11.43672 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.002658 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.967949 B =10531.350858 C =11131.747930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.111 3.889 11 C 0.098 3.902 12 N -0.610 5.610 13 C 0.096 3.904 14 C 0.134 3.866 15 H 0.118 0.882 16 N -0.711 5.711 17 C 0.548 3.452 18 O -0.522 6.522 19 C -0.197 4.197 20 H 0.152 0.848 21 C -0.139 4.139 22 C 0.224 3.776 23 F -0.149 7.149 24 F -0.153 7.153 25 C -0.168 4.168 26 C 0.512 3.488 27 O -0.507 6.507 28 C 0.151 3.849 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -26.359 3.105 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.004 4.004 12 N -0.346 5.346 13 C -0.029 4.029 14 C 0.028 3.972 15 H 0.136 0.864 16 N -0.363 5.363 17 C 0.333 3.667 18 O -0.398 6.398 19 C -0.219 4.219 20 H 0.170 0.830 21 C -0.177 4.177 22 C 0.186 3.814 23 F -0.129 7.129 24 F -0.133 7.133 25 C -0.209 4.209 26 C 0.298 3.702 27 O -0.381 6.381 28 C 0.025 3.975 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.243 0.757 36 H 0.151 0.849 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.077 0.923 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.643 -25.773 2.461 25.898 hybrid contribution 1.115 1.240 -0.120 1.672 sum 0.472 -24.533 2.341 24.649 Atomic orbital electron populations 1.69834 1.05025 1.25317 1.56346 1.24804 0.95691 0.97562 1.02361 0.86103 0.78543 0.83369 0.77621 1.21583 1.21617 1.20615 1.18976 0.90179 0.81724 1.44072 0.90216 1.45658 1.02485 0.99098 1.85805 1.22921 0.94197 0.87088 0.97389 1.24075 0.94164 0.83884 0.98316 1.48566 1.58983 1.18322 1.08694 1.22351 1.01939 0.84783 0.93786 1.21922 0.88479 0.91719 0.95037 0.86373 1.45906 1.10503 1.13901 1.65941 1.19146 0.88978 0.81555 0.77060 1.90745 1.27611 1.71336 1.50079 1.23742 1.00932 1.00041 0.97205 0.83043 1.24308 1.05729 0.91354 0.96353 1.19638 0.74581 1.04388 0.82751 1.93107 1.70167 1.88079 1.61554 1.93077 1.29574 1.96636 1.94062 1.22840 1.03345 0.95011 0.99726 1.20673 0.78738 0.88253 0.82530 1.90790 1.54671 1.46973 1.45703 1.22786 0.88315 0.87180 0.99189 0.93634 0.94027 0.94482 0.87656 0.89419 0.89765 0.75733 0.84885 0.84514 0.88059 0.86913 0.92326 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.10 11.38 55.49 0.63 -27.47 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -16.13 3.70 -178.10 -0.66 -16.79 16 10 C 0.11 2.35 8.45 -2.98 -0.03 2.33 16 11 C 0.10 1.80 4.82 -70.15 -0.34 1.46 16 12 N -0.61 -8.82 3.16 -166.57 -0.53 -9.34 16 13 C 0.10 0.85 6.97 -3.08 -0.02 0.83 16 14 C 0.13 1.16 3.48 -66.30 -0.23 0.93 16 15 H 0.12 0.92 7.63 -51.93 -0.40 0.52 16 16 N -0.71 -5.66 5.14 -52.23 -0.27 -5.93 16 17 C 0.55 4.91 7.25 -10.98 -0.08 4.83 16 18 O -0.52 -6.27 15.95 5.56 0.09 -6.18 16 19 C -0.20 -1.25 6.17 -91.77 -0.57 -1.82 16 20 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 21 C -0.14 -0.75 10.01 -26.73 -0.27 -1.02 16 22 C 0.22 1.86 5.20 -26.73 -0.14 1.73 16 23 F -0.15 -1.70 17.13 2.25 0.04 -1.66 16 24 F -0.15 -1.38 17.60 2.25 0.04 -1.34 16 25 C -0.17 -1.96 6.59 -26.74 -0.18 -2.14 16 26 C 0.51 8.44 7.44 -10.87 -0.08 8.36 16 27 O -0.51 -11.26 14.64 5.56 0.08 -11.18 16 28 C 0.15 3.74 6.88 -2.98 -0.02 3.72 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.84 7.41 -51.93 -0.38 0.45 16 32 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.41 2.67 8.62 -40.82 -0.35 2.32 16 36 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.14 0.82 7.67 -51.93 -0.40 0.42 16 38 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 39 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.61 5.58 -51.92 -0.29 1.32 16 41 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -37.71 354.23 -7.57 -45.29 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.11 Total: -0.67 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: -2.20 Total: 12.31 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.82 Total: -59.53 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.17 Total: -17.36 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.71 -7.57 -45.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.198 kcal (2) G-P(sol) polarization free energy of solvation -37.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds