Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00233 * 2 1 4 4 H 1.48496 * 109.47180 * 239.99969 * 3 2 1 5 5 H 1.48503 * 109.46692 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47049 * 119.99588 * 3 2 1 7 7 C 1.38817 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99877 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.48994 * 180.02562 * 9 7 2 11 11 C 1.53944 * 86.11730 * 155.35329 * 10 9 7 12 12 N 1.46503 * 113.74071 * 137.94669 * 11 10 9 13 13 C 1.46764 * 124.34698 * 120.00147 * 12 11 10 14 14 C 1.54480 * 105.47241 * 196.99555 * 13 12 11 15 15 H 1.09002 * 110.96643 * 216.46708 * 14 13 12 16 16 N 1.46496 * 110.97196 * 92.74128 * 14 13 12 17 17 C 1.34774 * 120.00526 * 155.00104 * 16 14 13 18 18 O 1.21289 * 119.99546 * 359.97438 * 17 16 14 19 19 C 1.50700 * 120.00200 * 180.02562 * 17 16 14 20 20 H 1.08994 * 115.54739 * 325.57772 * 19 17 16 21 21 C 1.52999 * 117.49857 * 179.91080 * 19 17 16 22 22 C 1.53001 * 117.50168 * 111.25221 * 19 17 16 23 23 F 1.39894 * 117.49683 * 214.97806 * 22 19 17 24 24 F 1.39901 * 117.49725 * 359.97438 * 22 19 17 25 25 C 1.54784 * 101.69261 * 334.38904 * 14 13 12 26 26 C 1.34420 * 124.35251 * 299.97636 * 12 11 10 27 27 O 1.21283 * 124.93917 * 359.57548 * 26 12 11 28 28 C 1.47576 * 134.49271 * 359.97438 * 9 7 2 29 29 H 0.97006 * 120.00434 * 0.02562 * 1 2 3 30 30 H 1.08994 * 113.77449 * 41.05198 * 10 9 7 31 31 H 1.09005 * 113.86579 * 269.66728 * 10 9 7 32 32 H 1.08994 * 113.74373 * 269.15392 * 11 10 9 33 33 H 1.09003 * 110.24343 * 315.99368 * 13 12 11 34 34 H 1.09004 * 110.24843 * 77.90470 * 13 12 11 35 35 H 0.97009 * 119.99628 * 334.99999 * 16 14 13 36 36 H 1.09006 * 117.49945 * 0.02562 * 21 19 17 37 37 H 1.08998 * 117.50132 * 144.99338 * 21 19 17 38 38 H 1.08996 * 110.61291 * 266.40068 * 25 14 13 39 39 H 1.09001 * 110.42713 * 143.71017 * 25 14 13 40 40 H 1.09006 * 113.76955 * 90.34161 * 28 9 7 41 41 H 1.09004 * 113.77001 * 318.94799 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3465 -4.0827 0.6410 12 7 -0.3335 -5.2613 0.0981 13 6 -0.7264 -6.4303 0.8937 14 6 -0.9913 -7.5558 -0.1307 15 1 -1.8262 -8.1817 0.1846 16 7 0.2126 -8.3622 -0.3468 17 6 0.1029 -9.6365 -0.7715 18 8 -0.9925 -10.1159 -0.9745 19 6 1.3414 -10.4661 -0.9932 20 1 2.2108 -9.9231 -1.3635 21 6 1.1504 -11.9061 -1.4737 22 6 1.5921 -11.6315 -0.0341 23 9 2.9198 -11.9189 0.3000 24 9 0.6544 -11.8451 0.9820 25 6 -1.3579 -6.7465 -1.3982 26 6 -0.6782 -5.4107 -1.1925 27 8 -0.4782 -4.5915 -2.0642 28 6 -0.1034 -2.7574 0.0005 29 1 -0.4851 0.8401 -0.0004 30 1 2.5618 -4.0322 0.6573 31 1 1.8331 -4.2371 -0.9951 32 1 0.3582 -4.0631 1.7308 33 1 0.0809 -6.7163 1.5679 34 1 -1.6318 -6.2138 1.4607 35 1 1.0887 -7.9788 -0.1841 36 1 0.1290 -12.2533 -1.6299 37 1 1.8942 -12.3104 -2.1602 38 1 -2.4377 -6.6177 -1.4722 39 1 -0.9694 -7.2389 -2.2896 40 1 -0.5273 -2.8731 -0.9970 41 1 -0.7170 -2.1389 0.6557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094735372.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -59.877203 kcal Electronic energy + Delta-G solvation = -28144.016911 eV Core-core repulsion = 23698.504707 eV Total energy + Delta-G solvation = -4445.512204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.17777 -47.84838 -40.92433 -39.83296 -37.39815 -36.63498 -35.88187 -34.10455 -32.21688 -30.53050 -27.68049 -27.28041 -25.21055 -24.76842 -23.43615 -23.06621 -21.71973 -20.89732 -20.38022 -18.81028 -18.35498 -17.76708 -17.21935 -16.78866 -16.63604 -16.33862 -16.31389 -15.22337 -15.14581 -14.80490 -14.63370 -14.47033 -14.28327 -14.06067 -13.98241 -13.92787 -13.54952 -13.43311 -13.04367 -12.80917 -12.61719 -12.03047 -11.88354 -11.77630 -11.75359 -11.44209 -11.38971 -10.84950 -10.80184 -10.73968 -10.35545 -10.20936 -10.02857 -9.73036 -9.52529 -9.22626 -8.67388 -8.23025 -6.83892 -5.74088 -3.06465 1.64459 2.39157 2.56309 2.84765 2.89925 3.20310 3.41249 3.45639 3.46792 3.62320 3.84395 4.03874 4.16183 4.34422 4.36829 4.49468 4.68617 4.88735 4.96190 5.01554 5.20947 5.24867 5.31378 5.37196 5.47924 5.51620 5.61430 5.64735 5.80968 6.02940 6.24293 6.46830 6.52747 6.82898 6.97353 7.27051 7.45639 7.56944 7.61856 7.67612 7.99530 8.51884 9.06484 9.72643 10.61351 11.42928 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.002483 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.885280 B =11273.420503 C =11853.511886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.609 5.609 13 C 0.094 3.906 14 C 0.133 3.867 15 H 0.119 0.881 16 N -0.710 5.710 17 C 0.548 3.452 18 O -0.522 6.522 19 C -0.196 4.196 20 H 0.152 0.848 21 C -0.139 4.139 22 C 0.223 3.777 23 F -0.153 7.153 24 F -0.150 7.150 25 C -0.167 4.167 26 C 0.511 3.489 27 O -0.508 6.508 28 C 0.151 3.849 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.408 0.592 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 -25.683 1.265 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.330 5.330 10 C -0.016 4.016 11 C -0.005 4.005 12 N -0.345 5.345 13 C -0.030 4.030 14 C 0.028 3.972 15 H 0.137 0.863 16 N -0.362 5.362 17 C 0.333 3.667 18 O -0.398 6.398 19 C -0.218 4.218 20 H 0.170 0.830 21 C -0.177 4.177 22 C 0.186 3.814 23 F -0.134 7.134 24 F -0.130 7.130 25 C -0.208 4.208 26 C 0.297 3.703 27 O -0.383 6.383 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.243 0.757 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.590 -25.139 0.746 25.157 hybrid contribution 1.106 1.119 0.235 1.590 sum 0.516 -24.020 0.981 24.046 Atomic orbital electron populations 1.69816 1.05032 1.25466 1.56222 1.24805 0.95682 0.97560 1.02313 0.86180 0.78459 0.83080 0.77903 1.21169 1.21527 1.21066 1.18931 0.90154 0.81728 1.44264 0.90259 1.45637 1.02475 0.99082 1.85825 1.22911 0.94202 0.87085 0.97353 1.24080 0.94172 0.83867 0.98365 1.48547 1.58909 1.18337 1.08664 1.22352 1.02002 0.84784 0.93858 1.21941 0.88580 0.91719 0.95002 0.86281 1.45883 1.10334 1.12105 1.67850 1.19147 0.88982 0.81748 0.76834 1.90748 1.27358 1.71588 1.50101 1.23758 1.01379 0.93300 1.03390 0.82998 1.24325 1.06740 0.94038 0.92601 1.19654 0.74012 1.03381 0.84384 1.93075 1.32646 1.93888 1.93771 1.93090 1.62929 1.95262 1.61766 1.22862 1.03307 0.95015 0.99639 1.20681 0.78779 0.88252 0.82549 1.90790 1.54827 1.46918 1.45720 1.22779 0.88309 0.87180 0.99172 0.93563 0.94037 0.94513 0.87656 0.89769 0.89424 0.75709 0.84493 0.84852 0.86868 0.88103 0.92329 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.99 11.38 55.49 0.63 -27.36 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -16.02 3.70 -178.11 -0.66 -16.68 16 10 C 0.11 2.34 8.45 -2.98 -0.03 2.31 16 11 C 0.10 1.79 4.82 -70.16 -0.34 1.45 16 12 N -0.61 -8.71 3.15 -166.66 -0.53 -9.24 16 13 C 0.09 0.87 6.97 -3.12 -0.02 0.84 16 14 C 0.13 1.15 3.52 -66.22 -0.23 0.92 16 15 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 16 N -0.71 -5.66 5.14 -52.15 -0.27 -5.92 16 17 C 0.55 4.89 7.25 -10.99 -0.08 4.81 16 18 O -0.52 -6.25 15.90 5.55 0.09 -6.16 16 19 C -0.20 -1.24 6.17 -91.77 -0.57 -1.80 16 20 H 0.15 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.14 -0.74 10.02 -26.70 -0.27 -1.01 16 22 C 0.22 1.66 5.20 -26.69 -0.14 1.52 16 23 F -0.15 -1.24 17.60 2.25 0.04 -1.20 16 24 F -0.15 -1.48 17.13 2.25 0.04 -1.44 16 25 C -0.17 -1.84 6.60 -26.66 -0.18 -2.01 16 26 C 0.51 8.17 7.44 -10.86 -0.08 8.08 16 27 O -0.51 -10.96 14.64 5.55 0.08 -10.88 16 28 C 0.15 3.72 6.88 -2.99 -0.02 3.70 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.81 7.41 -51.93 -0.38 0.43 16 32 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 33 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.41 2.70 8.66 -40.82 -0.35 2.35 16 36 H 0.14 0.81 7.67 -51.93 -0.40 0.41 16 37 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 40 H 0.06 1.60 5.58 -51.93 -0.29 1.31 16 41 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -37.06 354.24 -7.57 -44.64 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.11 Total: -0.55 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -2.20 Total: 11.93 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.82 Total: -59.20 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: 0.17 Total: -17.04 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.06 -7.57 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735372.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.238 kcal (2) G-P(sol) polarization free energy of solvation -37.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds