Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46494 * 125.87155 * 180.11507 * 13 12 11 15 15 C 1.53946 * 113.73620 * 11.99985 * 14 13 12 16 16 N 1.47585 * 86.11607 * 222.04784 * 15 14 13 17 17 C 1.34777 * 134.49454 * 204.64181 * 16 15 14 18 18 O 1.21466 * 119.99963 * 179.97438 * 17 16 15 19 19 C 1.48534 * 119.99940 * 0.02562 * 17 16 15 20 20 N 1.32457 * 119.18896 * 359.73332 * 19 17 16 21 21 C 1.32111 * 120.77359 * 179.72205 * 20 19 17 22 22 C 1.38804 * 119.15737 * 0.53144 * 21 20 19 23 23 C 1.38801 * 118.51120 * 359.74175 * 22 21 20 24 24 N 1.32110 * 119.16177 * 359.97438 * 23 22 21 25 25 C 1.47587 * 91.01352 * 24.64267 * 16 15 14 26 26 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 27 27 N 1.28636 * 110.17920 * 359.73997 * 26 13 12 28 28 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 31 31 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 32 32 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 33 33 H 1.08997 * 112.94836 * 143.73340 * 14 13 12 34 34 H 1.08992 * 113.77347 * 336.34629 * 15 14 13 35 35 H 1.09002 * 113.77012 * 107.75376 * 15 14 13 36 36 H 1.07992 * 120.42327 * 180.27460 * 21 20 19 37 37 H 1.08004 * 120.74339 * 179.74909 * 22 21 20 38 38 H 1.07998 * 120.41921 * 180.02562 * 23 22 21 39 39 H 1.09000 * 113.76791 * 221.06142 * 25 16 15 40 40 H 1.08997 * 113.86709 * 89.67308 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9699 -7.3959 -1.3883 15 6 -0.4944 -7.4854 -2.8497 16 7 -1.9251 -7.5502 -3.2060 17 6 -2.6167 -8.0448 -4.2517 18 8 -3.8277 -7.9535 -4.2768 19 6 -1.8981 -8.7026 -5.3730 20 7 -0.5771 -8.7896 -5.3310 21 6 0.0933 -9.3730 -6.3086 22 6 -0.6035 -9.8879 -7.3930 23 6 -1.9868 -9.7742 -7.4063 24 7 -2.5939 -9.1835 -6.3924 25 6 -2.2945 -6.8556 -1.9572 26 7 -0.2825 -6.2992 0.6943 27 7 0.4867 -5.3442 1.0829 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6849 -3.7190 -0.8822 31 1 2.6842 -3.7101 0.8977 32 1 0.8827 -5.3105 -2.0986 33 1 -1.0660 -8.3637 -0.8962 34 1 0.0064 -6.5848 -3.2048 35 1 0.0566 -8.3979 -3.0774 36 1 1.1700 -9.4447 -6.2665 37 1 -0.0810 -10.3664 -8.2082 38 1 -2.5596 -10.1644 -8.2345 39 1 -3.1805 -7.2653 -1.4722 40 1 -2.3231 -5.7699 -2.0483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105345773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = 194.355719 kcal Electronic energy + Delta-G solvation = -26369.508774 eV Core-core repulsion = 22418.002874 eV Total energy + Delta-G solvation = -3951.505900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10887 -41.81126 -40.42850 -38.26253 -35.00856 -34.49887 -33.52275 -32.85898 -31.83133 -29.95647 -29.62039 -27.03487 -26.09221 -25.61550 -25.10350 -23.79302 -22.81611 -21.33971 -20.77001 -20.18352 -18.54773 -18.12744 -17.78109 -17.05515 -16.88559 -16.38589 -16.09957 -15.94726 -15.31025 -15.00241 -14.71289 -14.39915 -14.21536 -14.03183 -13.80723 -13.65071 -13.23953 -13.13749 -12.80076 -12.61752 -12.13716 -11.89788 -11.62764 -11.54618 -11.27549 -10.89992 -10.80265 -10.66941 -10.39857 -10.37659 -10.08963 -9.95395 -9.89394 -9.72396 -9.33043 -8.89464 -8.85623 -6.91046 -5.73019 -3.02801 -0.16486 0.41930 1.68008 1.77296 2.06711 2.51040 2.88384 3.10459 3.27881 3.46295 3.47097 3.51511 3.52923 3.53740 3.90788 4.03940 4.22536 4.35022 4.37720 4.47788 4.63156 4.70488 4.82906 4.95070 5.02976 5.09549 5.20210 5.24397 5.35596 5.47888 5.59034 5.63074 5.79116 6.17756 6.23127 6.38132 6.64261 6.69689 6.77628 6.90926 7.18221 7.57893 7.71963 8.44192 8.80379 9.55977 10.11541 10.47213 11.49693 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015137 B = 0.002366 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.321208 B =11832.604293 C =12421.743651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.001 4.001 12 C -0.045 4.045 13 N -0.294 5.294 14 C 0.108 3.892 15 C 0.116 3.884 16 N -0.626 5.626 17 C 0.614 3.386 18 O -0.494 6.494 19 C 0.289 3.711 20 N -0.492 5.492 21 C 0.147 3.853 22 C -0.206 4.206 23 C 0.148 3.852 24 N -0.468 5.468 25 C 0.109 3.891 26 N -0.090 5.090 27 N -0.250 5.250 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.189 0.811 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.179 0.821 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.105 0.895 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -25.711 -16.652 30.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.139 4.139 12 C -0.194 4.194 13 N -0.089 5.089 14 C 0.004 3.996 15 C -0.007 4.007 16 N -0.363 5.363 17 C 0.398 3.602 18 O -0.364 6.364 19 C 0.019 3.981 20 N -0.209 5.209 21 C -0.019 4.019 22 C -0.228 4.228 23 C -0.019 4.019 24 N -0.183 5.183 25 C -0.014 4.014 26 N -0.069 5.069 27 N -0.118 5.118 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.206 0.794 33 H 0.164 0.836 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.196 0.804 37 H 0.174 0.826 38 H 0.196 0.804 39 H 0.124 0.876 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.353 -25.717 -14.760 29.683 hybrid contribution 1.019 0.834 -2.022 2.413 sum -0.334 -24.884 -16.782 30.016 Atomic orbital electron populations 1.69682 1.05169 1.25668 1.57474 1.24764 0.95523 0.97733 1.02915 0.86160 0.78667 0.83738 0.77431 1.21763 1.21799 1.20659 1.19222 0.91083 0.83804 1.42975 0.90877 1.42311 1.05986 0.99253 1.89532 1.18960 0.90052 0.81369 0.99322 1.22482 1.02429 1.00609 0.88338 1.23328 0.99069 0.94962 1.02090 1.47087 1.30831 1.24286 1.06648 1.23733 0.92370 0.92808 0.90664 1.23662 0.83703 1.05458 0.87918 1.49235 1.09563 1.57396 1.20104 1.16686 0.85536 0.78623 0.79310 1.90862 1.12431 1.56437 1.76669 1.22605 0.86807 0.95140 0.93565 1.68405 1.08710 1.15167 1.28583 1.23390 1.01409 0.89251 0.87886 1.23253 0.96898 1.01450 1.01214 1.23441 0.92367 0.90905 0.95147 1.68234 1.41201 1.08032 1.00834 1.23717 0.97820 0.99478 0.80394 1.78307 1.19430 1.16905 0.92238 1.75126 1.06334 1.04119 1.26218 0.93499 0.78099 0.94432 0.94269 0.79423 0.83633 0.87842 0.86810 0.80389 0.82574 0.80448 0.87648 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.75 5.59 -61.09 -0.34 -19.09 16 10 C 0.23 4.75 6.82 -5.19 -0.04 4.71 16 11 C 0.00 -0.02 6.61 -82.78 -0.55 -0.57 16 12 C -0.04 -0.62 10.72 -17.04 -0.18 -0.80 16 13 N -0.29 -3.79 3.54 -56.30 -0.20 -3.99 16 14 C 0.11 0.94 5.15 -70.14 -0.36 0.57 16 15 C 0.12 0.84 6.95 -2.97 -0.02 0.82 16 16 N -0.63 -6.10 3.61 -179.39 -0.65 -6.75 16 17 C 0.61 7.50 8.08 -12.01 -0.10 7.40 16 18 O -0.49 -7.77 17.59 5.40 0.09 -7.67 16 19 C 0.29 3.00 7.60 -157.07 -1.19 1.80 16 20 N -0.49 -3.77 7.91 -11.12 -0.09 -3.86 16 21 C 0.15 0.64 11.30 -17.22 -0.19 0.45 16 22 C -0.21 -0.67 10.18 -39.16 -0.40 -1.06 16 23 C 0.15 0.82 11.30 -17.22 -0.19 0.62 16 24 N -0.47 -4.76 10.13 -11.12 -0.11 -4.87 16 25 C 0.11 1.03 8.64 -2.97 -0.03 1.01 16 26 N -0.09 -1.52 13.17 60.35 0.79 -0.73 16 27 N -0.25 -4.94 12.41 33.29 0.41 -4.52 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.39 10.77 7.66 -40.82 -0.31 10.46 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.19 1.97 6.72 -52.49 -0.35 1.62 16 33 H 0.15 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.72 6.31 -51.93 -0.33 0.39 16 35 H 0.11 0.66 7.17 -51.93 -0.37 0.29 16 36 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 37 H 0.16 -0.04 8.06 -52.48 -0.42 -0.47 16 38 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 39 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -38.93 355.61 -6.82 -45.74 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -4.29 Total: 3.30 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -3.50 Total: 7.61 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: 0.54 Total: -71.79 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.09 Total: -7.67 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.93 -6.82 -45.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105345773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.099 kcal (2) G-P(sol) polarization free energy of solvation -38.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds