Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 119.99776 * 2 1 4 4 S 1.65592 * 120.00395 * 180.02562 * 2 1 3 5 5 O 1.42101 * 106.40017 * 336.45736 * 4 2 1 6 6 O 1.42109 * 106.40283 * 203.54051 * 4 2 1 7 7 N 1.65593 * 107.22183 * 89.99819 * 4 2 1 8 8 C 1.36942 * 120.00250 * 274.32546 * 7 4 2 9 9 H 1.07999 * 119.99679 * 325.44838 * 8 7 4 10 10 C 1.38810 * 119.99672 * 145.43764 * 8 7 4 11 11 N 1.31628 * 119.99369 * 156.16904 * 10 8 7 12 12 Si 1.86797 * 120.00746 * 336.16733 * 10 8 7 13 13 H 1.48504 * 109.47096 * 94.73746 * 12 10 8 14 14 H 1.48492 * 109.47300 * 214.73778 * 12 10 8 15 15 H 1.48503 * 109.46839 * 334.73782 * 12 10 8 16 16 C 1.46501 * 120.00103 * 94.32484 * 7 4 2 17 17 C 1.50699 * 109.47417 * 115.95481 * 16 7 4 18 18 N 1.30837 * 125.95650 * 82.89798 * 17 16 7 19 19 C 1.33248 * 109.82400 * 179.97438 * 18 17 16 20 20 C 1.50696 * 125.52304 * 179.97438 * 19 18 17 21 21 C 1.53002 * 117.49681 * 188.76390 * 20 19 18 22 22 C 1.53001 * 117.49686 * 120.10854 * 20 19 18 23 23 N 1.30714 * 108.94718 * 0.02562 * 19 18 17 24 24 N 1.34422 * 125.96375 * 262.88154 * 17 16 7 25 25 C 1.46497 * 126.82307 * 0.02562 * 24 17 16 26 26 H 1.09000 * 109.47250 * 239.99406 * 1 2 3 27 27 H 1.08999 * 109.47197 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46600 * 119.99727 * 1 2 3 29 29 H 1.08998 * 109.47626 * 270.00299 * 3 2 1 30 30 H 1.09003 * 109.46953 * 30.00093 * 3 2 1 31 31 H 1.08998 * 109.47014 * 149.99581 * 3 2 1 32 32 H 0.97001 * 119.99519 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.47207 * 355.95691 * 16 7 4 34 34 H 1.08998 * 109.47307 * 235.95729 * 16 7 4 35 35 H 1.08999 * 115.55682 * 334.43819 * 20 19 18 36 36 H 1.08995 * 117.49908 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49751 * 145.02787 * 21 20 19 38 38 H 1.09005 * 117.49824 * 214.98402 * 22 20 19 39 39 H 1.08999 * 117.50008 * 359.97125 * 22 20 19 40 40 H 1.09002 * 109.47275 * 275.28151 * 25 24 17 41 41 H 1.09001 * 109.47280 * 35.27768 * 25 24 17 42 42 H 1.09003 * 109.47168 * 155.28117 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4340 -0.0006 5 8 1.4114 -2.4066 0.5434 6 8 3.5761 -1.1568 0.5440 7 7 2.5382 -1.8579 -1.5825 8 6 1.5728 -2.5505 -2.2633 9 1 0.9648 -3.2785 -1.7467 10 6 1.3754 -2.3167 -3.6173 11 7 0.8255 -3.2445 -4.3720 12 14 1.8902 -0.6857 -4.3684 13 1 3.2524 -0.8145 -4.9456 14 1 0.9325 -0.3096 -5.4391 15 1 1.8950 0.3635 -3.3176 16 6 3.7879 -1.4919 -2.2538 17 6 4.5415 -2.7419 -2.6287 18 7 4.3374 -3.4711 -3.6957 19 6 5.1836 -4.5004 -3.7083 20 6 5.2551 -5.5621 -4.7753 21 6 6.1524 -6.7723 -4.5087 22 6 6.5762 -5.7155 -5.5317 23 7 5.9407 -4.4404 -2.6444 24 7 5.5408 -3.3021 -1.9255 25 6 6.1012 -2.8212 -0.6603 26 1 -0.3634 -0.5139 0.8899 27 1 -0.3633 1.0276 0.0005 28 1 -0.3632 -0.5138 -0.8900 29 1 2.3791 1.5836 -1.0276 30 1 1.6083 2.0284 0.5139 31 1 3.1498 1.1385 0.5139 32 1 0.6873 -3.0809 -5.3180 33 1 4.3977 -0.8878 -1.5820 34 1 3.5629 -0.9196 -3.1537 35 1 4.3337 -5.7318 -5.3324 36 1 6.6906 -6.8007 -3.5613 37 1 5.8215 -7.7381 -4.8906 38 1 6.5238 -5.9864 -6.5863 39 1 7.3934 -5.0482 -5.2579 40 1 6.8591 -2.0644 -0.8629 41 1 5.3071 -2.3865 -0.0531 42 1 6.5543 -3.6546 -0.1234 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118171954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 72.879377 kcal Electronic energy + Delta-G solvation = -28062.512538 eV Core-core repulsion = 24208.890229 eV Total energy + Delta-G solvation = -3853.622309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.54749 -37.07327 -36.32734 -36.03794 -35.36120 -34.82887 -33.31352 -32.11658 -30.60559 -27.60077 -27.37832 -26.36895 -24.18842 -23.79412 -23.27615 -22.21055 -20.33844 -19.38998 -18.46013 -17.51034 -17.03109 -16.69563 -16.35707 -15.87851 -15.40454 -15.06884 -14.96995 -14.46078 -14.06321 -13.81319 -13.59917 -13.12820 -12.96089 -12.81407 -12.63703 -12.49617 -12.25148 -12.19484 -11.78059 -11.68140 -11.52795 -11.36394 -11.17333 -11.11013 -10.94508 -10.81628 -10.76865 -10.55018 -10.38627 -10.27136 -10.14225 -9.22411 -9.09746 -9.01954 -8.68387 -8.41409 -8.26470 -6.52169 -4.03841 1.43780 2.16245 2.82114 3.10615 3.17876 3.22493 3.36174 3.77697 4.13808 4.22311 4.31223 4.44170 4.82139 4.88738 5.01535 5.11430 5.19513 5.22331 5.33515 5.35993 5.47013 5.54456 5.71235 5.76459 5.76492 5.80811 5.91417 5.95066 6.03412 6.05136 6.08498 6.28422 6.30001 6.42777 6.49031 6.62566 6.89984 7.03393 7.20744 7.36240 7.56043 8.25330 8.80045 8.92323 9.01198 10.55851 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.005638 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.602196 B = 4965.235373 C = 5903.482181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.022 6.022 3 C 0.090 3.910 4 S 2.676 3.324 5 O -0.981 6.981 6 O -1.023 7.023 7 N -0.838 5.838 8 C -0.286 4.286 9 H 0.118 0.882 10 C 0.098 3.902 11 N -0.814 5.814 12 Si 0.865 3.135 13 H -0.262 1.262 14 H -0.287 1.287 15 H -0.262 1.262 16 C 0.192 3.808 17 C 0.291 3.709 18 N -0.490 5.490 19 C 0.246 3.754 20 C -0.059 4.059 21 C -0.163 4.163 22 C -0.164 4.164 23 N -0.330 5.330 24 N -0.379 5.379 25 C 0.084 3.916 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.278 0.722 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 4.568 0.862 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.857 5.857 3 C -0.057 4.057 4 S 2.701 3.299 5 O -0.965 6.965 6 O -1.007 7.007 7 N -0.667 5.667 8 C -0.431 4.431 9 H 0.135 0.865 10 C -0.118 4.118 11 N -0.449 5.449 12 Si 0.693 3.307 13 H -0.188 1.188 14 H -0.214 1.214 15 H -0.187 1.187 16 C 0.062 3.938 17 C 0.012 3.988 18 N -0.216 5.216 19 C -0.035 4.035 20 C -0.080 4.080 21 C -0.201 4.201 22 C -0.202 4.202 23 N -0.159 5.159 24 N -0.171 5.171 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.478 3.770 1.770 8.559 hybrid contribution -0.115 1.344 -0.563 1.462 sum 7.363 5.115 1.207 9.046 Atomic orbital electron populations 1.21376 0.79892 1.01597 1.01887 1.58680 1.14606 1.22223 1.90216 1.21413 0.96995 0.86434 1.00858 1.08264 0.72458 0.73117 0.76031 1.93455 1.66176 1.58847 1.78053 1.93310 1.42352 1.85523 1.79540 1.53927 1.18196 1.61970 1.32604 1.18992 1.15190 1.15722 0.93149 0.86459 1.25356 0.93780 0.96594 0.96112 1.69818 1.37282 1.31200 1.06596 0.87100 0.79046 0.84923 0.79641 1.18807 1.21370 1.18715 1.19777 0.85226 0.89453 0.99294 1.24423 0.88596 0.97287 0.88456 1.70409 1.23989 1.05682 1.21519 1.23020 0.91644 0.95206 0.93673 1.19994 0.96631 0.94285 0.97051 1.22989 1.02774 0.93262 1.01080 1.22989 0.97164 1.02548 0.97511 1.77770 1.25590 1.04182 1.08391 1.50217 1.27597 1.19509 1.19753 1.22159 1.01193 1.00391 0.82117 0.92917 0.92090 0.91716 0.93836 0.92213 0.90865 0.91140 0.88356 0.90319 0.85101 0.88102 0.88240 0.88183 0.88900 0.90715 0.87190 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 10.30 59.85 0.62 2.25 16 2 N -1.02 -18.63 3.64 -129.20 -0.47 -19.10 16 3 C 0.09 1.31 10.63 59.85 0.64 1.95 16 4 S 2.68 57.74 6.06 -107.50 -0.65 57.09 16 5 O -0.98 -24.52 16.28 -57.17 -0.93 -25.45 16 6 O -1.02 -21.17 13.13 -57.17 -0.75 -21.92 16 7 N -0.84 -19.04 2.70 -61.09 -0.17 -19.20 16 8 C -0.29 -7.33 9.17 -15.06 -0.14 -7.47 16 9 H 0.12 3.35 7.58 -52.49 -0.40 2.95 16 10 C 0.10 2.49 4.93 -17.43 -0.09 2.40 16 11 N -0.81 -21.64 13.97 55.49 0.78 -20.87 16 12 Si 0.87 19.18 24.87 -169.99 -4.23 14.96 16 13 H -0.26 -5.79 6.82 56.52 0.39 -5.41 16 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.00 16 16 C 0.19 3.99 5.12 -5.19 -0.03 3.97 16 17 C 0.29 6.40 7.05 -155.70 -1.10 5.30 16 18 N -0.49 -11.43 10.83 -8.16 -0.09 -11.52 16 19 C 0.25 5.15 7.69 -156.85 -1.21 3.94 16 20 C -0.06 -0.99 6.33 -91.77 -0.58 -1.57 16 21 C -0.16 -2.20 10.14 -26.69 -0.27 -2.47 16 22 C -0.16 -2.16 10.24 -26.69 -0.27 -2.43 16 23 N -0.33 -6.72 12.24 32.42 0.40 -6.33 16 24 N -0.38 -7.59 4.04 -65.10 -0.26 -7.86 16 25 C 0.08 1.32 11.01 59.85 0.66 1.98 16 26 H 0.05 0.86 8.01 -51.93 -0.42 0.44 16 27 H 0.06 0.80 7.79 -51.93 -0.40 0.39 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 31 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 32 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.10 1.73 6.30 -51.93 -0.33 1.40 16 34 H 0.08 1.65 2.85 -51.93 -0.15 1.51 16 35 H 0.13 2.20 8.14 -51.93 -0.42 1.78 16 36 H 0.10 1.44 7.88 -51.93 -0.41 1.03 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.87 5.60 -51.93 -0.29 1.58 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -31.80 355.79 -8.48 -40.28 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.70 Total: 6.71 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -1.77 Total: 7.84 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: 0.19 Total: -84.87 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -1.68 Total: -47.38 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.23 Total: 14.96 kcal Atomic # 16 Polarization: 57.74 SS G_CDS: -0.65 Total: 57.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.80 -8.48 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118171954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.163 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds