Wall clock time and date at job start Tue Mar 31 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34760 * 119.72697 * 2 1 4 4 O 1.21887 * 120.21034 * 359.69306 * 3 2 1 5 5 C 1.40638 * 119.58101 * 179.97438 * 3 2 1 6 6 C 1.36430 * 119.05660 * 359.97438 * 5 3 2 7 7 N 1.37871 * 120.28612 * 179.97438 * 6 5 3 8 8 C 1.34782 * 119.99728 * 84.80161 * 7 6 5 9 9 O 1.21252 * 119.99775 * 4.60387 * 8 7 6 10 10 C 1.50698 * 119.99942 * 184.60635 * 8 7 6 11 11 C 1.50699 * 109.46886 * 173.06951 * 10 8 7 12 12 H 1.08000 * 119.99997 * 5.17620 * 11 10 8 13 13 C 1.37883 * 119.99977 * 185.17752 * 11 10 8 14 14 N 1.31514 * 119.99741 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47222 * 89.99654 * 15 13 11 17 17 H 1.48498 * 109.47262 * 209.99992 * 15 13 11 18 18 H 1.48505 * 109.46993 * 330.00124 * 15 13 11 19 19 N 1.37502 * 119.42966 * 0.02919 * 6 5 3 20 20 C 1.40113 * 119.80273 * 179.97438 * 19 6 5 21 21 C 1.38851 * 120.06404 * 96.10172 * 20 19 6 22 22 C 1.38119 * 119.92433 * 179.74952 * 21 20 19 23 23 C 1.38275 * 120.07387 * 0.55293 * 22 21 20 24 24 C 1.38292 * 120.13297 * 359.69999 * 23 22 21 25 25 C 1.38108 * 120.06624 * 0.02562 * 24 23 22 26 26 C 1.34546 * 119.72527 * 179.97438 * 2 1 3 27 27 O 1.21577 * 119.50454 * 0.02677 * 26 2 1 28 28 H 1.08997 * 109.46746 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.46910 * 120.00234 * 1 2 3 30 30 H 1.08995 * 109.46903 * 240.00861 * 1 2 3 31 31 H 1.07997 * 120.47069 * 179.97438 * 5 3 2 32 32 H 0.97000 * 120.00657 * 264.80361 * 7 6 5 33 33 H 1.08995 * 109.47062 * 293.07002 * 10 8 7 34 34 H 1.08995 * 109.47071 * 53.07195 * 10 8 7 35 35 H 0.97001 * 119.99631 * 180.02562 * 14 13 11 36 36 H 1.08002 * 120.03922 * 0.02562 * 21 20 19 37 37 H 1.08010 * 119.96331 * 180.27446 * 22 21 20 38 38 H 1.08001 * 119.93668 * 179.72336 * 23 22 21 39 39 H 1.07999 * 119.96536 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.03642 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1333 1.1703 0.0000 4 8 1.5228 2.2251 -0.0056 5 6 3.5397 1.1667 0.0005 6 6 4.1993 -0.0276 0.0016 7 7 5.5776 -0.0607 0.0016 8 6 6.2538 0.0299 1.1640 9 8 5.6508 0.0563 2.2156 10 6 7.7592 0.0983 1.1566 11 6 8.2568 0.3647 2.5539 12 1 7.5607 0.3904 3.3793 13 6 9.6007 0.5755 2.7787 14 7 10.4482 0.5448 1.7735 15 14 10.2176 0.9050 4.5108 16 1 10.5638 -0.3819 5.1661 17 1 11.4231 1.7700 4.4508 18 1 9.1561 1.5886 5.2926 19 7 3.4776 -1.1980 0.0015 20 6 4.1469 -2.4289 0.0020 21 6 4.3665 -3.1008 1.1972 22 6 5.0221 -4.3165 1.1938 23 6 5.4697 -4.8590 0.0033 24 6 5.2571 -4.1897 -1.1880 25 6 4.5972 -2.9765 -1.1918 26 6 2.1322 -1.1684 0.0005 27 8 1.5103 -2.2130 0.0005 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5137 0.8900 31 1 4.0897 2.0961 0.0001 32 1 6.0607 -0.1491 -0.8348 33 1 8.1642 -0.8491 0.8011 34 1 8.0831 0.9026 0.4962 35 1 11.3937 0.6928 1.9317 36 1 4.0211 -2.6754 2.1279 37 1 5.1893 -4.8418 2.1226 38 1 5.9860 -5.8076 0.0037 39 1 5.6075 -4.6161 -2.1163 40 1 4.4311 -2.4543 -2.1226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143202309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:07 Heat of formation + Delta-G solvation = -22.818037 kcal Electronic energy + Delta-G solvation = -28252.101323 eV Core-core repulsion = 24226.592560 eV Total energy + Delta-G solvation = -4025.508763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68020 -39.99404 -39.38025 -38.54207 -37.07308 -35.23691 -34.17049 -33.12298 -31.87963 -31.13628 -29.52556 -29.13788 -27.48749 -24.62334 -24.20200 -23.05516 -22.81866 -22.22939 -20.42138 -19.49340 -18.79192 -17.79032 -17.16187 -16.76303 -16.54553 -16.31433 -15.93927 -15.60742 -15.39054 -14.84743 -14.56557 -14.38878 -14.11113 -14.08329 -13.65553 -13.60577 -13.35590 -13.14741 -12.77393 -12.46630 -12.28848 -11.95779 -11.84844 -11.47332 -11.15870 -11.08822 -10.92063 -10.77763 -10.44954 -10.12549 -9.89944 -9.53878 -9.46526 -9.22620 -9.11185 -9.07554 -8.63720 -8.57344 -6.20653 -4.21732 0.75356 0.97456 1.23643 1.69545 1.87944 2.77662 3.12397 3.26852 3.32436 3.33162 3.35696 3.41095 3.55360 4.36300 4.53209 4.72744 4.76653 4.92121 5.02094 5.17876 5.19044 5.19857 5.21358 5.23967 5.36213 5.41430 5.47573 5.57631 5.80551 5.82392 5.93552 6.18541 6.25182 6.32022 6.34347 6.60508 6.79372 6.91962 7.05055 7.07969 7.40324 7.47252 7.81040 7.82784 8.07440 8.68836 8.88492 9.44259 10.91225 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.004341 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.839719 B = 6448.471990 C = 8040.853054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.557 5.557 3 C 0.557 3.443 4 O -0.518 6.518 5 C -0.285 4.285 6 C 0.441 3.559 7 N -0.702 5.702 8 C 0.526 3.474 9 O -0.514 6.514 10 C 0.013 3.987 11 C -0.514 4.514 12 H 0.076 0.924 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.902 3.098 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 N -0.494 5.494 20 C 0.119 3.881 21 C -0.082 4.082 22 C -0.106 4.106 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.101 4.101 26 C 0.703 3.297 27 O -0.530 6.530 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.419 0.581 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.002 -7.903 -9.116 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.302 5.302 3 C 0.354 3.646 4 O -0.394 6.394 5 C -0.313 4.313 6 C 0.246 3.754 7 N -0.362 5.362 8 C 0.318 3.682 9 O -0.385 6.385 10 C -0.026 4.026 11 C -0.553 4.553 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 N -0.215 5.215 20 C 0.030 3.970 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.130 4.130 25 C -0.120 4.120 26 C 0.406 3.594 27 O -0.401 6.401 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.194 0.806 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.964 -7.918 -8.331 17.325 hybrid contribution 0.747 0.171 0.463 0.895 sum -12.217 -7.747 -7.868 16.467 Atomic orbital electron populations 1.21892 0.75261 1.05189 1.03676 1.46279 1.10424 1.06210 1.67258 1.16903 0.88518 0.82934 0.76254 1.90890 1.70179 1.29321 1.49049 1.21947 0.92643 0.97864 1.18874 1.17982 0.84575 0.84390 0.88424 1.43973 1.01123 1.78342 1.12736 1.22597 0.92653 0.72088 0.80863 1.90614 1.70653 1.46592 1.30651 1.19293 0.82148 1.00066 1.01109 1.21080 0.92926 1.48970 0.92291 0.90633 1.24975 0.96657 0.94964 0.97642 1.69939 1.03180 1.49698 1.30777 0.86411 0.78275 0.78325 0.84022 1.20514 1.21123 1.19590 1.43096 1.04894 1.06138 1.67421 1.17325 0.99604 0.85526 0.94551 1.21277 0.96967 0.94776 0.97108 1.21092 0.97613 0.94974 0.98825 1.21315 0.98294 0.99956 0.92398 1.21008 0.98933 0.94427 0.98670 1.21133 0.98187 0.96259 0.96423 1.15660 0.80668 0.84421 0.78688 1.91016 1.65149 1.30299 1.53660 0.87877 0.90434 0.90425 0.80600 0.74083 0.92931 0.92438 0.92668 0.85439 0.84986 0.85267 0.85057 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.98 59.85 0.60 1.49 16 2 N -0.56 -7.92 2.96 -131.82 -0.39 -8.31 16 3 C 0.56 8.61 7.41 -15.36 -0.11 8.50 16 4 O -0.52 -8.96 16.42 5.02 0.08 -8.88 16 5 C -0.28 -4.26 9.90 -39.33 -0.39 -4.65 16 6 C 0.44 6.60 5.94 -152.53 -0.91 5.70 16 7 N -0.70 -10.52 4.43 -11.27 -0.05 -10.57 16 8 C 0.53 10.49 7.76 -10.98 -0.09 10.41 16 9 O -0.51 -12.05 15.45 5.58 0.09 -11.96 16 10 C 0.01 0.29 5.46 -29.04 -0.16 0.14 16 11 C -0.51 -13.77 8.92 -34.44 -0.31 -14.08 16 12 H 0.08 2.13 6.77 -52.49 -0.36 1.77 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -24.62 13.29 55.43 0.74 -23.89 16 15 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 N -0.49 -7.34 2.67 -64.32 -0.17 -7.52 16 20 C 0.12 1.69 3.76 -83.62 -0.31 1.38 16 21 C -0.08 -1.21 9.97 -39.40 -0.39 -1.60 16 22 C -0.11 -1.30 10.04 -39.61 -0.40 -1.70 16 23 C -0.10 -1.06 10.04 -39.55 -0.40 -1.46 16 24 C -0.11 -1.13 10.04 -39.61 -0.40 -1.53 16 25 C -0.10 -1.18 9.97 -39.40 -0.39 -1.57 16 26 C 0.70 10.76 8.09 -87.31 -0.71 10.06 16 27 O -0.53 -8.89 16.20 5.30 0.09 -8.80 16 28 H 0.10 1.08 6.88 -51.93 -0.36 0.72 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16 32 H 0.42 4.92 8.82 -40.82 -0.36 4.56 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -33.45 356.71 -8.16 -41.61 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.44 Total: 4.34 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: -4.46 Total: 12.57 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.12 Total: -50.28 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: 0.25 Total: -29.65 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.45 -8.16 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143202309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.797 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds