Wall clock time and date at job start Tue Mar 31 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35706 * 117.00447 * 2 1 4 4 C 1.41923 * 126.88027 * 179.71253 * 3 2 1 5 5 C 1.35282 * 103.95813 * 180.26245 * 4 3 2 6 6 C 1.50699 * 126.70590 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46956 * 89.95210 * 6 5 4 8 8 C 1.46905 * 110.99577 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46585 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46854 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47442 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00459 * 180.02562 * 11 10 9 13 13 O 1.21275 * 119.99913 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99847 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.47018 * 179.97438 * 14 12 11 16 16 C 1.76195 * 100.00129 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.38802 * 120.00208 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99927 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00175 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47343 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47181 * 120.00658 * 20 18 16 23 23 H 1.48505 * 109.47376 * 240.00522 * 20 18 16 24 24 O 1.34082 * 106.57892 * 359.97438 * 5 4 3 25 25 N 1.20905 * 111.72206 * 359.97438 * 24 5 4 26 26 H 1.08999 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46855 * 299.99920 * 1 2 3 28 28 H 1.08992 * 109.47170 * 59.99843 * 1 2 3 29 29 H 1.07996 * 128.02642 * 0.23894 * 4 3 2 30 30 H 1.09004 * 109.47008 * 209.94949 * 6 5 4 31 31 H 1.09002 * 109.47598 * 329.95043 * 6 5 4 32 32 H 1.00898 * 110.99740 * 303.94920 * 7 6 5 33 33 H 1.08999 * 109.46842 * 299.99462 * 8 7 6 34 34 H 1.08995 * 109.47113 * 60.00266 * 8 7 6 35 35 H 1.08993 * 109.47376 * 300.00228 * 9 8 7 36 36 H 1.09000 * 109.46591 * 60.00081 * 9 8 7 37 37 H 1.09006 * 109.47172 * 300.00502 * 10 9 8 38 38 H 1.08997 * 109.47506 * 59.99884 * 10 9 8 39 39 H 0.97001 * 119.99663 * 0.02562 * 11 10 9 40 40 H 1.09004 * 109.47504 * 299.99278 * 14 12 11 41 41 H 1.09000 * 109.47672 * 59.99982 * 14 12 11 42 42 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4434 1.4525 0.0057 5 6 3.5397 2.8019 0.0091 6 6 4.8089 3.6144 0.0150 7 7 5.2264 3.8805 -1.3681 8 6 6.4630 4.6728 -1.4014 9 6 6.8657 4.9286 -2.8552 10 6 8.1532 5.7543 -2.8900 11 7 8.5385 5.9998 -4.2819 12 6 9.6494 6.7112 -4.5583 13 8 10.3297 7.1486 -3.6546 14 6 10.0453 6.9642 -5.9901 15 16 11.5686 7.9409 -6.0313 16 6 11.7938 8.0833 -7.7730 17 1 11.0844 7.6281 -8.4482 18 6 12.8824 8.7813 -8.2773 19 7 13.7468 9.3365 -7.4544 20 14 13.1207 8.9328 -10.1238 21 1 12.0188 8.2261 -10.8248 22 1 13.1116 10.3673 -10.5080 23 1 14.4210 8.3261 -10.5066 24 8 2.2851 3.2750 0.0049 25 7 1.4701 2.3819 -0.0009 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 4.2447 0.7285 0.0074 30 1 4.6331 4.5591 0.5297 31 1 5.5929 3.0599 0.5309 32 1 5.3333 3.0208 -1.8853 33 1 6.2983 5.6248 -0.8968 34 1 7.2586 4.1260 -0.8953 35 1 7.0304 3.9765 -3.3595 36 1 6.0701 5.4751 -3.3617 37 1 7.9880 6.7065 -2.3857 38 1 8.9489 5.2082 -2.3833 39 1 7.9941 5.6503 -5.0046 40 1 10.2099 6.0124 -6.4952 41 1 9.2496 7.5112 -6.4960 42 1 14.5077 9.8240 -7.8067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154814736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:59 Heat of formation + Delta-G solvation = -11.700968 kcal Electronic energy + Delta-G solvation = -23391.395545 eV Core-core repulsion = 19501.812806 eV Total energy + Delta-G solvation = -3889.582739 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.35163 -39.30811 -39.20503 -37.56359 -35.21025 -33.68052 -32.73526 -32.42635 -31.08646 -29.10691 -28.13782 -26.51612 -25.47821 -24.02787 -23.72555 -22.00857 -21.55070 -20.30297 -18.47646 -18.24757 -17.81288 -17.21994 -16.53805 -16.25321 -16.17837 -15.93180 -15.70802 -15.41760 -14.88248 -14.80138 -14.72906 -14.35201 -14.18601 -13.87417 -13.13538 -12.95562 -12.78242 -12.61894 -12.53460 -12.36515 -12.12006 -11.88863 -11.76714 -11.60727 -11.17561 -11.06699 -11.01789 -10.75511 -10.17089 -9.80504 -9.71773 -9.41244 -9.09944 -9.07630 -8.88818 -8.23045 -6.49863 -6.21775 -3.92185 0.88048 1.77788 2.26561 2.58853 3.02215 3.10152 3.21702 3.28037 3.32409 3.56276 3.72150 3.82721 4.20500 4.26375 4.41674 4.50716 4.60131 4.63148 4.65291 4.73860 4.82223 4.83804 4.97251 5.10133 5.13573 5.18111 5.20530 5.28337 5.33973 5.47203 5.64080 5.83300 5.91573 5.94397 6.14512 6.27412 6.47490 6.61668 6.69396 7.60063 7.70577 7.77315 8.35573 8.61360 9.23806 10.85763 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.036464 B = 0.001317 C = 0.001286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.687130 B =21258.428544 C =21761.032005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.230 4.230 5 C 0.004 3.996 6 C 0.136 3.864 7 N -0.686 5.686 8 C 0.063 3.937 9 C -0.129 4.129 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.154 4.154 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 O 0.111 5.889 25 N -0.407 5.407 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.178 0.822 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.347 0.653 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.399 0.601 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.306 -18.120 15.974 34.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.192 6.192 3 C 0.009 3.991 4 C -0.252 4.252 5 C -0.060 4.060 6 C 0.006 3.994 7 N -0.319 5.319 8 C -0.066 4.066 9 C -0.168 4.168 10 C -0.002 4.002 11 N -0.394 5.394 12 C 0.317 3.683 13 O -0.392 6.392 14 C -0.304 4.304 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 O 0.050 5.950 25 N -0.133 5.133 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.195 0.805 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.165 0.835 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.580 -16.616 17.452 34.422 hybrid contribution 0.097 -1.783 -2.341 2.944 sum -24.483 -18.399 15.111 34.151 Atomic orbital electron populations 1.23080 0.76679 1.04178 1.02424 1.86190 1.22710 1.20899 1.89365 1.22005 0.90896 0.85760 1.00433 1.21826 0.94473 0.95677 1.13272 1.24147 0.88440 0.92751 1.00708 1.20374 0.87998 0.99384 0.91644 1.60412 1.34752 1.24953 1.11756 1.21892 0.89189 0.98521 0.97030 1.21741 0.97466 1.00899 0.96664 1.21169 0.95553 0.99783 0.83713 1.45977 1.27963 1.57481 1.08003 1.20308 0.79691 0.76997 0.91272 1.90700 1.51655 1.49132 1.47756 1.23534 1.06456 1.05545 0.94906 1.85394 1.22350 1.66163 1.09554 1.22914 1.13687 1.40261 0.91474 0.90867 1.24991 0.94848 0.94649 0.99074 1.70028 1.12756 1.32899 1.34629 0.86117 0.78229 0.78048 0.83103 1.19613 1.20564 1.20572 1.84830 1.12126 1.29820 1.68265 1.74171 1.15718 0.96729 1.26657 0.87582 0.92230 0.92150 0.80487 0.87855 0.90989 0.83451 0.89871 0.94141 0.91256 0.90103 0.91465 0.91717 0.76775 0.89228 0.89183 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.73 101.05 1.08 1.26 16 2 O -0.29 -2.42 10.57 -18.82 -0.20 -2.62 16 3 C 0.21 1.88 8.01 -16.66 -0.13 1.74 16 4 C -0.23 -1.55 11.11 -39.23 -0.44 -1.99 16 5 C 0.00 0.03 6.99 -35.36 -0.25 -0.22 16 6 C 0.14 0.58 6.25 -4.97 -0.03 0.55 16 7 N -0.69 -3.62 6.49 -115.05 -0.75 -4.37 16 8 C 0.06 0.34 5.69 -3.82 -0.02 0.32 16 9 C -0.13 -0.86 5.59 -26.73 -0.15 -1.00 16 10 C 0.12 1.26 5.67 -4.05 -0.02 1.23 16 11 N -0.74 -9.33 5.56 -60.30 -0.33 -9.67 16 12 C 0.53 9.73 7.85 -10.99 -0.09 9.64 16 13 O -0.52 -11.63 15.86 5.56 0.09 -11.55 16 14 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 O 0.11 1.01 11.19 17.07 0.19 1.20 16 25 N -0.41 -4.09 11.54 30.38 0.35 -3.74 16 26 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.35 1.60 8.72 -39.29 -0.34 1.26 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 40 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 382.11 15.07 5.76 5.76 Total: -1.00 -36.45 382.11 -7.17 -43.62 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.15 Total: -1.48 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 0.38 Total: -4.23 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.00 Total: -43.15 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.08 Total: -12.97 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.45 -7.17 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154814736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds