Wall clock time and date at job start Tue Mar 31 2020 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86809 * 119.99580 * 2 1 4 4 H 1.48499 * 109.47137 * 274.98630 * 3 2 1 5 5 H 1.48504 * 109.47105 * 34.98825 * 3 2 1 6 6 H 1.48499 * 109.46639 * 154.98500 * 3 2 1 7 7 C 1.40132 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00043 * 186.15048 * 7 2 1 9 9 C 1.46141 * 119.99970 * 6.14815 * 7 2 1 10 10 O 1.21731 * 119.99981 * 353.93628 * 9 7 2 11 11 N 1.34779 * 120.00444 * 173.93668 * 9 7 2 12 12 C 1.38729 * 120.00214 * 180.02562 * 11 9 7 13 13 N 1.31742 * 119.79811 * 359.97438 * 12 11 9 14 14 C 1.33973 * 119.80141 * 180.02562 * 13 12 11 15 15 C 1.40509 * 120.86987 * 179.97438 * 14 13 12 16 16 C 1.36167 * 119.75024 * 180.02562 * 15 14 13 17 17 C 1.39292 * 120.91705 * 0.02716 * 16 15 14 18 18 C 1.36200 * 120.91811 * 359.97234 * 17 16 15 19 19 C 1.40416 * 119.76702 * 0.02562 * 18 17 16 20 20 N 1.34060 * 120.86518 * 179.97438 * 19 18 17 21 21 C 1.31740 * 119.78062 * 180.02562 * 20 19 18 22 22 N 1.38593 * 119.79984 * 180.02562 * 21 20 19 23 23 C 1.46500 * 120.00153 * 359.97438 * 22 21 20 24 24 C 1.53000 * 109.47005 * 179.97438 * 23 22 21 25 25 C 1.50701 * 109.47163 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99619 * 179.97438 * 25 24 23 27 27 O 1.21280 * 119.99669 * 359.97438 * 25 24 23 28 28 H 0.97001 * 120.00247 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99119 * 359.97438 * 11 9 7 30 30 H 1.07997 * 120.12050 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.53919 * 180.02562 * 16 15 14 32 32 H 1.08003 * 119.53495 * 179.69794 * 17 16 15 33 33 H 1.08002 * 120.11455 * 180.02562 * 18 17 16 34 34 H 0.97004 * 119.99747 * 179.97438 * 22 21 20 35 35 H 1.09000 * 109.47022 * 299.99109 * 23 22 21 36 36 H 1.08999 * 109.47454 * 59.99747 * 23 22 21 37 37 H 1.09005 * 109.46973 * 299.99608 * 24 23 22 38 38 H 1.09004 * 109.47623 * 59.99457 * 24 23 22 39 39 H 0.96990 * 120.00662 * 359.97438 * 26 25 24 40 40 H 0.97006 * 119.99339 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.3823 2.1074 -1.3948 5 1 1.4943 2.6201 0.8028 6 1 3.5865 1.4122 0.5920 7 6 2.0071 -1.2135 -0.0005 8 1 3.0824 -1.2162 0.0997 9 6 1.2828 -2.4755 -0.1367 10 8 0.0655 -2.4815 -0.1385 11 7 1.9625 -3.6328 -0.2601 12 6 1.2749 -4.8307 -0.3899 13 7 -0.0426 -4.8325 -0.3914 14 6 -0.7067 -5.9893 -0.5162 15 6 -2.1115 -6.0174 -0.5200 16 6 -2.7632 -7.2061 -0.6477 17 6 -2.0565 -8.3997 -0.7745 18 6 -0.6946 -8.4100 -0.7747 19 6 0.0117 -7.2034 -0.6451 20 7 1.3522 -7.1880 -0.6421 21 6 1.9932 -6.0437 -0.5187 22 7 3.3790 -6.0273 -0.5161 23 6 4.1267 -7.2800 -0.6497 24 6 5.6275 -6.9841 -0.6177 25 6 6.3966 -8.2728 -0.7545 26 7 7.7443 -8.2566 -0.7528 27 8 5.8028 -9.3244 -0.8660 28 1 -0.4850 0.8400 0.0004 29 1 2.9325 -3.6279 -0.2590 30 1 -2.6721 -5.0995 -0.4221 31 1 -3.8430 -7.2237 -0.6507 32 1 -2.5962 -9.3304 -0.8695 33 1 -0.1597 -9.3430 -0.8742 34 1 3.8539 -5.1863 -0.4258 35 1 3.8698 -7.9461 0.1740 36 1 3.8708 -7.7568 -1.5959 37 1 5.8841 -6.3182 -1.4417 38 1 5.8838 -6.5071 0.3283 39 1 8.2191 -7.4156 -0.6640 40 1 8.2393 -9.0861 -0.8413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168952954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:34 Heat of formation + Delta-G solvation = 8.944114 kcal Electronic energy + Delta-G solvation = -26891.264863 eV Core-core repulsion = 22899.426161 eV Total energy + Delta-G solvation = -3991.838702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.88006 -39.80301 -38.24423 -37.11108 -35.57315 -34.07752 -33.99751 -33.04880 -32.48757 -31.11992 -29.54214 -28.55098 -26.60329 -25.06590 -23.32772 -22.69553 -21.70829 -20.74345 -20.37830 -18.63753 -18.45574 -17.54093 -17.21329 -16.71816 -16.54109 -16.09590 -15.49245 -15.24653 -15.07477 -14.98844 -14.42962 -14.05171 -13.89794 -13.87824 -13.61077 -13.38139 -12.95435 -12.59647 -12.27990 -12.08883 -11.54035 -11.43344 -11.39782 -11.25280 -11.20665 -10.90419 -10.74738 -10.63248 -10.34129 -10.32955 -10.05422 -9.62058 -9.21546 -8.86609 -8.67758 -7.75917 -7.52803 -6.96707 -6.36639 -4.85522 0.93114 1.27840 2.31738 2.59921 2.84930 3.03691 3.10363 3.14264 3.35150 3.45582 3.76655 4.09423 4.40887 4.42114 4.56507 4.71128 4.73772 4.79494 4.90306 5.12755 5.16603 5.28839 5.39837 5.63754 5.65501 5.77984 5.84595 5.91306 6.00212 6.40696 6.41454 6.52124 6.70710 6.80816 6.91463 6.94859 7.05746 7.23866 7.26796 7.44815 7.76048 7.91730 7.99799 8.16955 8.52051 8.80549 9.13868 10.37208 10.54220 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.007474 B = 0.004236 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3745.336459 B = 6608.545757 C =10329.690927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.087 3.913 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.529 3.471 10 O -0.504 6.504 11 N -0.661 5.661 12 C 0.340 3.660 13 N -0.411 5.411 14 C 0.076 3.924 15 C -0.073 4.073 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.090 4.090 19 C 0.076 3.924 20 N -0.491 5.491 21 C 0.356 3.644 22 N -0.719 5.719 23 C 0.151 3.849 24 C -0.160 4.160 25 C 0.523 3.477 26 N -0.858 5.858 27 O -0.537 6.537 28 H 0.273 0.727 29 H 0.393 0.607 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -12.181 -1.297 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.090 0.910 9 C 0.333 3.667 10 O -0.378 6.378 11 N -0.309 5.309 12 C 0.083 3.917 13 N -0.134 5.134 14 C -0.048 4.048 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.139 4.139 18 C -0.110 4.110 19 C -0.047 4.047 20 N -0.216 5.216 21 C 0.098 3.902 22 N -0.358 5.358 23 C 0.026 3.974 24 C -0.200 4.200 25 C 0.307 3.693 26 N -0.422 5.422 27 O -0.412 6.412 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.231 0.769 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 9.586 -12.788 -1.364 16.040 hybrid contribution 1.831 1.271 0.035 2.229 sum 11.416 -11.516 -1.329 16.270 Atomic orbital electron populations 1.69981 1.07150 1.27904 1.33398 1.25714 0.94688 1.00444 0.92648 0.86262 0.80110 0.81053 0.78816 1.19664 1.20280 1.18786 1.20777 0.94179 0.88891 1.53763 0.90985 1.18608 0.87982 0.81475 0.78604 1.90764 1.12886 1.83973 1.50221 1.44608 1.09092 1.04542 1.72639 1.19664 0.89717 0.86269 0.96074 1.69126 1.04580 1.25024 1.14648 1.19501 0.95335 0.88560 1.01366 1.20757 0.91675 0.98732 0.98107 1.20742 0.99851 0.92155 1.01788 1.20719 0.93794 0.98050 1.01354 1.20514 0.93653 0.96069 1.00785 1.19105 0.88616 0.94353 1.02614 1.68106 1.08270 1.24673 1.20538 1.19182 0.85825 0.89690 0.95552 1.44197 1.01370 1.09465 1.80808 1.20884 0.87063 0.85762 1.03656 1.21862 0.96265 0.96500 1.05368 1.20403 0.82661 0.91007 0.75204 1.43877 1.07220 1.13328 1.77765 1.90804 1.68843 1.33093 1.48505 0.91622 0.77275 0.84830 0.85867 0.85989 0.85571 0.75790 0.90825 0.90832 0.87869 0.87877 0.76947 0.76777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.62 11.85 55.55 0.66 -20.97 16 2 C 0.09 2.27 5.50 -17.35 -0.10 2.17 16 3 Si 0.91 18.81 29.56 -169.99 -5.03 13.78 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.54 -14.09 9.53 -35.70 -0.34 -14.43 16 8 H 0.07 1.65 7.86 -52.49 -0.41 1.24 16 9 C 0.53 14.36 7.69 -13.09 -0.10 14.26 16 10 O -0.50 -15.83 13.28 5.16 0.07 -15.76 16 11 N -0.66 -14.18 5.35 -12.41 -0.07 -14.25 16 12 C 0.34 7.38 7.46 -154.91 -1.16 6.23 16 13 N -0.41 -10.03 7.94 -9.81 -0.08 -10.11 16 14 C 0.08 1.63 6.59 -84.77 -0.56 1.07 16 15 C -0.07 -1.35 9.98 -39.47 -0.39 -1.74 16 16 C -0.13 -1.84 9.95 -39.93 -0.40 -2.23 16 17 C -0.12 -1.64 9.95 -39.92 -0.40 -2.03 16 18 C -0.09 -1.43 9.97 -39.50 -0.39 -1.82 16 19 C 0.08 1.46 6.59 -84.77 -0.56 0.91 16 20 N -0.49 -9.27 9.65 -9.85 -0.10 -9.37 16 21 C 0.36 6.48 7.52 -155.04 -1.17 5.31 16 22 N -0.72 -9.52 5.68 -60.00 -0.34 -9.86 16 23 C 0.15 1.77 4.97 -4.04 -0.02 1.75 16 24 C -0.16 -1.16 5.81 -27.88 -0.16 -1.32 16 25 C 0.52 4.68 8.10 -10.98 -0.09 4.59 16 26 N -0.86 -4.17 8.87 31.22 0.28 -3.90 16 27 O -0.54 -7.45 16.82 5.56 0.09 -7.35 16 28 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 29 H 0.39 6.56 6.81 -40.82 -0.28 6.28 16 30 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 31 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 32 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.41 4.36 6.61 -40.82 -0.27 4.09 16 35 H 0.07 1.00 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.40 0.73 8.83 -40.82 -0.36 0.37 16 40 H 0.40 1.72 8.93 -40.82 -0.36 1.35 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -38.97 351.98 -9.23 -48.20 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.20 Total: 11.58 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: -5.83 Total: 12.70 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: 0.36 Total: -68.46 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.16 Total: -23.11 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.97 -9.23 -48.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168952954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.144 kcal (2) G-P(sol) polarization free energy of solvation -38.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds