Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47062 * 2 1 4 4 C 1.52995 * 109.47807 * 239.99577 * 2 1 3 5 5 O 1.45201 * 109.47156 * 119.99807 * 2 1 3 6 6 C 1.34641 * 117.00117 * 59.99856 * 5 2 1 7 7 O 1.21514 * 119.99469 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00244 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99984 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46945 * 325.00219 * 9 8 6 11 11 C 1.50701 * 109.46908 * 84.99813 * 9 8 6 12 12 H 1.08002 * 119.99761 * 239.99532 * 11 9 8 13 13 C 1.37871 * 119.99694 * 60.28095 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 C 1.50694 * 109.46918 * 205.00341 * 9 8 6 20 20 O 1.21282 * 120.00369 * 359.97438 * 19 9 8 21 21 N 1.34782 * 120.00051 * 180.02562 * 19 9 8 22 22 C 1.46498 * 120.00366 * 179.97438 * 21 19 9 23 23 H 1.09004 * 110.64847 * 323.27177 * 22 21 19 24 24 C 1.54598 * 110.73466 * 199.89553 * 22 21 19 25 25 O 1.44043 * 102.54953 * 266.80791 * 24 22 21 26 26 N 1.41459 * 107.84464 * 333.10657 * 25 24 22 27 27 C 1.34777 * 111.67591 * 18.75062 * 26 25 24 28 28 O 1.21277 * 126.24214 * 178.81623 * 27 26 25 29 29 H 1.08999 * 109.47673 * 300.00469 * 1 2 3 30 30 H 1.09002 * 109.46918 * 60.00487 * 1 2 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46754 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47308 * 299.99704 * 3 2 1 34 34 H 1.08996 * 109.46904 * 59.99944 * 3 2 1 35 35 H 1.08999 * 109.47573 * 300.00932 * 4 2 1 36 36 H 1.09002 * 109.46934 * 59.99945 * 4 2 1 37 37 H 1.08997 * 109.47647 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99591 * 0.02562 * 8 6 5 39 39 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99471 * 359.97438 * 21 19 9 41 41 H 1.09000 * 110.79297 * 25.06855 * 24 22 21 42 42 H 1.08996 * 110.79552 * 148.54068 * 24 22 21 43 43 H 0.97003 * 124.16548 * 198.75394 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6654 2.4173 9 6 1.6739 -4.0668 2.5833 10 1 0.6651 -4.2095 2.1958 11 6 2.6321 -4.9504 1.8268 12 1 2.2676 -5.5907 1.0372 13 6 3.9732 -4.9455 2.1468 14 7 4.4171 -4.1657 3.1083 15 14 5.1598 -6.0464 1.2143 16 1 5.6925 -5.3150 0.0368 17 1 6.2824 -6.4322 2.1066 18 1 4.4480 -7.2672 0.7582 19 6 1.7058 -4.4276 4.0460 20 8 2.0260 -3.5961 4.8689 21 7 1.3795 -5.6746 4.4399 22 6 1.4111 -6.0255 5.8619 23 1 2.2413 -5.5272 6.3625 24 6 1.4964 -7.5582 6.0456 25 8 0.1122 -7.9357 6.1728 26 7 -0.5941 -6.8254 6.6919 27 6 0.0942 -5.6779 6.5303 28 8 -0.2724 -4.5696 6.8592 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2493 38 1 2.6261 -2.2362 3.0838 39 1 5.3605 -4.1626 3.3336 40 1 1.1238 -6.3397 3.7817 41 1 1.9469 -8.0282 5.1714 42 1 2.0506 -7.8092 6.9500 43 1 -1.4663 -6.8828 7.1124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180782113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -135.040272 kcal Electronic energy + Delta-G solvation = -29755.345958 eV Core-core repulsion = 25417.661954 eV Total energy + Delta-G solvation = -4337.684004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65798 -39.81936 -38.42774 -37.40056 -36.36158 -34.10531 -33.78771 -33.42182 -31.87271 -31.58695 -29.73821 -27.50938 -27.07846 -26.97653 -24.09182 -23.42779 -21.76283 -20.95226 -19.79495 -19.19823 -18.36313 -17.59796 -16.92968 -16.76147 -15.94267 -15.73148 -15.38235 -15.29538 -15.22537 -14.87581 -14.73763 -14.07690 -13.92839 -13.77397 -13.76952 -13.48219 -13.26827 -12.86289 -12.44131 -12.18789 -12.02395 -11.83856 -11.76630 -11.48694 -11.41681 -11.33909 -11.14682 -11.09108 -10.81646 -10.75171 -10.30194 -10.24319 -10.03973 -9.68142 -9.25826 -9.12620 -8.97885 -8.57414 -8.41935 -7.72867 -6.31569 -4.47529 2.07965 2.38169 3.07807 3.17478 3.23301 3.24668 3.68743 3.89688 4.02316 4.15401 4.22855 4.39217 4.55347 4.93546 5.08778 5.12608 5.15184 5.28624 5.38355 5.40252 5.69578 5.73482 5.83993 5.97613 6.04754 6.14631 6.23971 6.24923 6.27794 6.57713 6.62022 6.69476 6.79587 6.89425 7.03425 7.30345 7.59225 7.63837 7.81937 8.05889 8.23804 8.57073 8.82851 9.21717 9.29788 9.60561 10.70929 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004246 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.959815 B = 6593.512567 C = 8137.538088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.373 6.373 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.661 5.661 9 C 0.271 3.729 10 H 0.070 0.930 11 C -0.539 4.539 12 H 0.074 0.926 13 C 0.078 3.922 14 N -0.857 5.857 15 Si 0.900 3.100 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.544 3.456 20 O -0.532 6.532 21 N -0.713 5.713 22 C 0.099 3.901 23 H 0.130 0.870 24 C 0.023 3.977 25 O -0.144 6.144 26 N -0.594 5.594 27 C 0.502 3.498 28 O -0.488 6.488 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.269 0.731 40 H 0.407 0.593 41 H 0.128 0.872 42 H 0.093 0.907 43 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -2.337 1.231 5.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.289 6.289 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.318 5.318 9 C 0.167 3.833 10 H 0.088 0.912 11 C -0.578 4.578 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.491 5.491 15 Si 0.727 3.273 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.195 1.195 19 C 0.333 3.667 20 O -0.407 6.407 21 N -0.370 5.370 22 C -0.012 4.012 23 H 0.148 0.852 24 C -0.054 4.054 25 O -0.152 6.152 26 N -0.302 5.302 27 C 0.285 3.715 28 O -0.359 6.359 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.243 0.757 41 H 0.146 0.854 42 H 0.111 0.889 43 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -4.751 -1.428 1.599 5.212 hybrid contribution 0.859 -0.830 -0.373 1.251 sum -3.891 -2.258 1.226 4.663 Atomic orbital electron populations 1.22496 0.94698 1.05105 1.01479 1.21808 0.93883 0.91195 0.83209 1.21826 1.02070 0.93364 1.02347 1.22488 1.01383 1.03911 0.96017 1.86306 1.72168 1.25144 1.45268 1.18024 0.79406 0.79532 0.83138 1.90758 1.43313 1.70362 1.43771 1.45052 1.52588 1.12072 1.22136 1.18217 0.97444 0.79133 0.88552 0.91177 1.21200 0.92077 1.24535 1.19969 0.90823 1.25125 0.98546 0.95029 0.94313 1.69933 1.15648 1.36101 1.27418 0.86462 0.80301 0.80745 0.79779 1.20431 1.21120 1.19477 1.21263 0.73146 0.80442 0.91882 1.90582 1.46136 1.48944 1.54994 1.45513 1.72814 1.14724 1.03948 1.21984 0.97295 0.95071 0.86808 0.85197 1.24265 0.82385 0.93993 1.04759 1.90900 1.19785 1.20128 1.84338 1.47840 1.20055 1.00177 1.62161 1.21691 0.88010 0.83494 0.78276 1.90839 1.73557 1.21143 1.50360 0.92639 0.92029 0.89109 0.91748 0.90867 0.91825 0.88878 0.92171 0.92520 0.75681 0.92112 0.75709 0.85432 0.88864 0.71641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 8.37 37.15 0.31 -2.54 16 2 C 0.14 2.31 1.13 -90.62 -0.10 2.20 16 3 C -0.14 -1.83 8.85 37.16 0.33 -1.50 16 4 C -0.18 -3.00 8.37 37.16 0.31 -2.69 16 5 O -0.37 -7.87 9.94 -40.33 -0.40 -8.27 16 6 C 0.65 15.18 8.01 54.05 0.43 15.61 16 7 O -0.59 -14.25 11.54 -19.28 -0.22 -14.48 16 8 N -0.66 -16.13 4.36 -61.01 -0.27 -16.39 16 9 C 0.27 6.43 2.57 -70.24 -0.18 6.24 16 10 H 0.07 1.65 7.58 -51.93 -0.39 1.26 16 11 C -0.54 -13.16 8.66 -34.44 -0.30 -13.46 16 12 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 13 C 0.08 1.92 5.23 -17.82 -0.09 1.82 16 14 N -0.86 -21.99 11.58 55.43 0.64 -21.35 16 15 Si 0.90 19.42 29.54 -169.99 -5.02 14.40 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C 0.54 12.34 5.98 -10.99 -0.07 12.27 16 20 O -0.53 -13.61 15.51 5.56 0.09 -13.53 16 21 N -0.71 -12.84 5.05 -53.62 -0.27 -13.11 16 22 C 0.10 1.54 3.37 -67.74 -0.23 1.31 16 23 H 0.13 2.20 7.70 -51.93 -0.40 1.80 16 24 C 0.02 0.25 7.74 38.00 0.29 0.54 16 25 O -0.14 -1.65 12.49 -11.40 -0.14 -1.79 16 26 N -0.59 -7.29 7.31 31.49 0.23 -7.06 16 27 C 0.50 8.19 8.32 -10.48 -0.09 8.10 16 28 O -0.49 -10.03 18.03 5.56 0.10 -9.93 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.68 5.88 -51.93 -0.31 1.37 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.82 5.88 -51.93 -0.31 1.52 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 10.37 7.59 -40.82 -0.31 10.06 16 39 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.41 6.50 8.46 -40.82 -0.35 6.16 16 41 H 0.13 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.44 4.19 8.96 -40.82 -0.37 3.82 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -32.27 364.63 -4.92 -37.18 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -5.77 Total: 20.90 kcal Atomic # 6 Polarization: 27.30 SS G_CDS: 0.62 Total: 27.92 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.34 Total: -57.92 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -0.58 Total: -47.99 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.27 -4.92 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.858 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds