Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47062 * 2 1 4 4 C 1.52995 * 109.47807 * 239.99577 * 2 1 3 5 5 O 1.45201 * 109.47156 * 119.99807 * 2 1 3 6 6 C 1.34641 * 117.00117 * 59.99856 * 5 2 1 7 7 O 1.21514 * 119.99469 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00244 * 180.02562 * 6 5 2 9 9 C 1.46501 * 119.99984 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46945 * 325.00219 * 9 8 6 11 11 C 1.50701 * 109.46908 * 84.99813 * 9 8 6 12 12 H 1.08002 * 119.99761 * 239.99532 * 11 9 8 13 13 C 1.37871 * 119.99694 * 60.28095 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 9 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 9 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 C 1.50694 * 109.46918 * 205.00341 * 9 8 6 20 20 O 1.21282 * 120.00369 * 359.97438 * 19 9 8 21 21 N 1.34782 * 120.00051 * 180.02562 * 19 9 8 22 22 C 1.46498 * 120.00366 * 179.97438 * 21 19 9 23 23 H 1.09004 * 110.64847 * 323.27177 * 22 21 19 24 24 C 1.54598 * 110.73466 * 199.89553 * 22 21 19 25 25 O 1.44043 * 102.54953 * 266.80791 * 24 22 21 26 26 N 1.41459 * 107.84464 * 333.10657 * 25 24 22 27 27 C 1.34777 * 111.67591 * 18.75062 * 26 25 24 28 28 O 1.21277 * 126.24214 * 178.81623 * 27 26 25 29 29 H 1.08999 * 109.47673 * 300.00469 * 1 2 3 30 30 H 1.09002 * 109.46918 * 60.00487 * 1 2 3 31 31 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46754 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47308 * 299.99704 * 3 2 1 34 34 H 1.08996 * 109.46904 * 59.99944 * 3 2 1 35 35 H 1.08999 * 109.47573 * 300.00932 * 4 2 1 36 36 H 1.09002 * 109.46934 * 59.99945 * 4 2 1 37 37 H 1.08997 * 109.47647 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99591 * 0.02562 * 8 6 5 39 39 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 40 40 H 0.97003 * 119.99471 * 359.97438 * 21 19 9 41 41 H 1.09000 * 110.79297 * 25.06855 * 24 22 21 42 42 H 1.08996 * 110.79552 * 148.54068 * 24 22 21 43 43 H 0.97003 * 124.16548 * 198.75394 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9515 -2.5097 0.5036 8 7 2.0671 -2.6654 2.4173 9 6 1.6739 -4.0668 2.5833 10 1 0.6651 -4.2095 2.1958 11 6 2.6321 -4.9504 1.8268 12 1 2.2676 -5.5907 1.0372 13 6 3.9732 -4.9455 2.1468 14 7 4.4171 -4.1657 3.1083 15 14 5.1598 -6.0464 1.2143 16 1 5.6925 -5.3150 0.0368 17 1 6.2824 -6.4322 2.1066 18 1 4.4480 -7.2672 0.7582 19 6 1.7058 -4.4276 4.0460 20 8 2.0260 -3.5961 4.8689 21 7 1.3795 -5.6746 4.4399 22 6 1.4111 -6.0255 5.8619 23 1 2.2413 -5.5272 6.3625 24 6 1.4964 -7.5582 6.0456 25 8 0.1122 -7.9357 6.1728 26 7 -0.5941 -6.8254 6.6919 27 6 0.0942 -5.6779 6.5303 28 8 -0.2724 -4.5696 6.8592 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6768 -0.2075 -2.1392 37 1 3.1301 -0.7209 -1.2493 38 1 2.6261 -2.2362 3.0838 39 1 5.3605 -4.1626 3.3336 40 1 1.1238 -6.3397 3.7817 41 1 1.9469 -8.0282 5.1714 42 1 2.0506 -7.8092 6.9500 43 1 -1.4663 -6.8828 7.1124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180782113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -162.404940 kcal Electronic energy + Delta-G solvation = -29756.532579 eV Core-core repulsion = 25417.661954 eV Total energy + Delta-G solvation = -4338.870625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.92390 -41.48386 -40.09645 -38.67419 -38.00298 -35.84756 -35.43844 -34.92808 -33.71426 -32.70624 -31.16222 -29.21309 -28.27921 -28.22259 -25.83442 -24.62906 -23.28613 -22.30136 -21.46310 -20.84601 -19.62113 -19.19026 -18.68245 -18.17756 -17.47144 -17.10891 -17.00762 -16.80185 -16.63105 -16.46815 -16.24331 -15.53493 -15.33597 -15.23324 -15.14968 -14.94490 -14.69759 -14.32056 -14.14638 -13.80225 -13.24376 -13.13694 -13.04899 -12.86973 -12.77150 -12.76293 -12.69743 -12.45680 -12.37148 -12.20233 -12.13159 -11.78993 -11.64166 -11.22366 -11.04946 -10.78192 -10.46737 -10.21088 -9.94409 -9.60163 -8.19885 -6.42253 1.01108 1.08718 1.39801 1.47318 1.54098 1.55879 2.01691 2.14080 2.40737 2.56308 2.92204 3.08969 3.25606 3.43777 3.72676 3.87253 3.89817 4.04597 4.17846 4.32711 4.56874 4.58360 4.65592 4.67416 4.68806 4.81230 4.85909 4.91854 4.94151 5.14075 5.37924 5.42698 5.51045 5.57256 5.62521 5.66799 5.79715 5.84468 5.96465 6.57104 6.72493 6.87916 6.93745 7.32599 7.56135 7.76588 8.81319 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.004246 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.959815 B = 6593.512567 C = 8137.538088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.176 4.176 5 O -0.384 6.384 6 C 0.644 3.356 7 O -0.602 6.602 8 N -0.670 5.670 9 C 0.265 3.735 10 H 0.063 0.937 11 C -0.545 4.545 12 H 0.071 0.929 13 C 0.044 3.956 14 N -0.879 5.879 15 Si 0.958 3.042 16 H -0.292 1.292 17 H -0.281 1.281 18 H -0.256 1.256 19 C 0.544 3.456 20 O -0.568 6.568 21 N -0.701 5.701 22 C 0.090 3.910 23 H 0.114 0.886 24 C 0.036 3.964 25 O -0.136 6.136 26 N -0.572 5.572 27 C 0.498 3.502 28 O -0.539 6.539 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.399 0.601 39 H 0.267 0.733 40 H 0.417 0.583 41 H 0.149 0.851 42 H 0.127 0.873 43 H 0.450 0.550 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -3.390 0.461 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.081 3.919 3 C -0.189 4.189 4 C -0.233 4.233 5 O -0.299 6.299 6 C 0.396 3.604 7 O -0.495 6.495 8 N -0.326 5.326 9 C 0.161 3.839 10 H 0.081 0.919 11 C -0.584 4.584 12 H 0.089 0.911 13 C -0.162 4.162 14 N -0.514 5.514 15 Si 0.784 3.216 16 H -0.218 1.218 17 H -0.206 1.206 18 H -0.179 1.179 19 C 0.332 3.668 20 O -0.446 6.446 21 N -0.357 5.357 22 C -0.020 4.020 23 H 0.132 0.868 24 C -0.040 4.040 25 O -0.144 6.144 26 N -0.279 5.279 27 C 0.282 3.718 28 O -0.415 6.415 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.234 0.766 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.167 0.833 42 H 0.145 0.855 43 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -4.711 -2.567 0.821 5.427 hybrid contribution 0.772 -0.495 -0.187 0.936 sum -3.939 -3.062 0.634 5.029 Atomic orbital electron populations 1.22432 0.93884 1.03529 1.03358 1.22417 0.94857 0.92795 0.81803 1.21861 1.02037 0.90682 1.04308 1.22429 1.00979 1.02308 0.97585 1.86313 1.72312 1.23849 1.47467 1.18123 0.79191 0.80335 0.82721 1.90749 1.43747 1.70999 1.44000 1.45113 1.52720 1.12464 1.22285 1.18286 0.96911 0.79085 0.89628 0.91939 1.21287 0.92520 1.24609 1.19973 0.91078 1.25712 0.99672 0.96020 0.94832 1.70059 1.15614 1.37203 1.28508 0.85559 0.78505 0.79539 0.78031 1.21841 1.20628 1.17929 1.21057 0.73041 0.81564 0.91096 1.90556 1.48082 1.50342 1.55593 1.45307 1.71332 1.13376 1.05675 1.22183 0.96595 0.98558 0.84679 0.86832 1.24467 0.82267 0.89881 1.07392 1.90931 1.20240 1.19019 1.84199 1.47616 1.20146 0.99553 1.60550 1.21711 0.88506 0.83571 0.78052 1.90812 1.74697 1.23307 1.52689 0.92410 0.88465 0.92319 0.91870 0.87271 0.91456 0.92354 0.88456 0.93054 0.76633 0.92402 0.74486 0.83349 0.85471 0.69908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 8.37 71.98 0.60 -4.73 16 2 C 0.12 3.87 1.13 -10.80 -0.01 3.85 16 3 C -0.13 -3.16 8.85 71.98 0.64 -2.52 16 4 C -0.18 -5.68 8.37 71.98 0.60 -5.08 16 5 O -0.38 -16.49 9.94 -55.51 -0.55 -17.04 16 6 C 0.64 31.25 8.01 129.79 1.04 32.29 16 7 O -0.60 -30.08 11.54 19.80 0.23 -29.85 16 8 N -0.67 -33.98 4.36 -577.35 -2.52 -36.50 16 9 C 0.27 12.99 2.57 43.50 0.11 13.10 16 10 H 0.06 3.07 7.58 -2.38 -0.02 3.05 16 11 C -0.55 -26.92 8.66 25.60 0.22 -26.69 16 12 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 13 C 0.04 2.14 5.23 84.65 0.44 2.58 16 14 N -0.88 -45.76 11.58 21.45 0.25 -45.51 16 15 Si 0.96 39.49 29.54 68.60 2.03 41.52 16 16 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 19 C 0.54 25.37 5.98 87.65 0.52 25.90 16 20 O -0.57 -30.24 15.51 -3.04 -0.05 -30.29 16 21 N -0.70 -25.22 5.05 -441.94 -2.23 -27.46 16 22 C 0.09 2.73 3.37 45.12 0.15 2.88 16 23 H 0.11 3.88 7.70 -2.38 -0.02 3.86 16 24 C 0.04 0.67 7.74 72.53 0.56 1.23 16 25 O -0.14 -2.69 12.49 -38.47 -0.48 -3.18 16 26 N -0.57 -13.01 7.31 -172.68 -1.26 -14.27 16 27 C 0.50 16.13 8.32 87.98 0.73 16.86 16 28 O -0.54 -22.84 18.03 -3.02 -0.05 -22.89 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.19 5.88 -2.39 -0.01 2.17 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 2.31 5.88 -2.39 -0.01 2.29 16 36 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.40 21.31 7.59 -92.71 -0.70 20.61 16 39 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 40 H 0.42 13.02 8.46 -92.71 -0.78 12.24 16 41 H 0.15 2.22 8.04 -2.39 -0.02 2.20 16 42 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.45 7.83 8.96 -92.71 -0.83 7.00 16 Total: -1.00 -73.25 364.63 -0.26 -73.51 By element: Atomic # 1 Polarization: 53.53 SS G_CDS: -1.23 Total: 52.30 kcal Atomic # 6 Polarization: 54.05 SS G_CDS: 5.62 Total: 59.66 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.77 Total: -123.74 kcal Atomic # 8 Polarization: -102.35 SS G_CDS: -0.91 Total: -103.25 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -73.25 -0.26 -73.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180782113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.895 kcal (2) G-P(sol) polarization free energy of solvation -73.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds