Wall clock time and date at job start Tue Mar 31 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37807 * 119.41517 * 2 1 4 4 C 1.48260 * 120.29822 * 359.97438 * 3 2 1 5 5 O 1.21502 * 120.00126 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00289 * 180.02562 * 4 3 2 7 7 C 1.39787 * 120.00515 * 174.89183 * 6 4 3 8 8 C 1.39334 * 119.94663 * 325.53859 * 7 6 4 9 9 C 1.38470 * 120.42057 * 179.72120 * 8 7 6 10 10 C 1.37695 * 120.33110 * 0.55118 * 9 8 7 11 11 C 1.40742 * 119.88860 * 359.72687 * 10 9 8 12 12 C 1.41408 * 120.20673 * 180.02562 * 11 10 9 13 13 H 1.08006 * 120.00254 * 25.13723 * 12 11 10 14 14 C 1.39939 * 120.00279 * 205.13521 * 12 11 10 15 15 N 1.30833 * 119.99395 * 16.78797 * 14 12 11 16 16 Si 1.86800 * 120.00371 * 196.78588 * 14 12 11 17 17 H 1.48505 * 109.46780 * 60.00052 * 16 14 12 18 18 H 1.48493 * 109.46962 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47073 * 300.00293 * 16 14 12 20 20 C 1.38279 * 119.95615 * 145.81102 * 7 6 4 21 21 C 1.35890 * 119.40588 * 179.97438 * 3 2 1 22 22 C 1.46742 * 118.39605 * 0.02562 * 21 3 2 23 23 O 1.21684 * 120.57731 * 180.02562 * 22 21 3 24 24 N 1.34918 * 118.84130 * 359.97438 * 22 21 3 25 25 C 1.46502 * 119.78417 * 180.02562 * 24 22 21 26 26 C 1.34332 * 119.40997 * 180.02562 * 2 1 3 27 27 O 1.21587 * 119.12306 * 0.27699 * 26 2 1 28 28 H 1.08991 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46962 * 299.99973 * 1 2 3 30 30 H 1.09000 * 109.46789 * 59.99560 * 1 2 3 31 31 H 0.97007 * 119.99921 * 354.88729 * 6 4 3 32 32 H 1.08001 * 119.78684 * 359.97438 * 8 7 6 33 33 H 1.08007 * 119.83561 * 180.25278 * 9 8 7 34 34 H 1.07994 * 120.05728 * 179.74399 * 10 9 8 35 35 H 0.97003 * 119.99220 * 180.02562 * 15 14 12 36 36 H 1.08009 * 120.16591 * 359.97438 * 20 7 6 37 37 H 1.07997 * 120.80404 * 179.97438 * 21 3 2 38 38 H 1.08999 * 109.47242 * 269.97558 * 25 24 22 39 39 H 1.08999 * 109.46937 * 29.98122 * 25 24 22 40 40 H 1.08995 * 109.47115 * 149.97894 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1418 1.2004 0.0000 4 6 1.3941 2.4807 -0.0006 5 8 0.1791 2.4746 -0.0006 6 7 2.0621 3.6512 -0.0011 7 6 1.3613 4.8559 -0.1094 8 6 0.2076 4.9219 -0.8878 9 6 -0.4974 6.1086 -0.9974 10 6 -0.0592 7.2403 -0.3467 11 6 1.1077 7.1904 0.4385 12 6 1.5635 8.3484 1.1100 13 1 0.8662 9.1307 1.3714 14 6 2.9179 8.4807 1.4361 15 7 3.8086 7.7214 0.8515 16 14 3.4541 9.7416 2.7058 17 1 2.7997 9.4445 4.0053 18 1 4.9288 9.6825 2.8698 19 1 3.0600 11.0995 2.2520 20 6 1.8172 5.9817 0.5515 21 6 3.5007 1.2002 0.0005 22 6 4.1984 -0.0908 0.0005 23 8 5.4143 -0.1373 0.0014 24 7 3.4681 -1.2252 0.0005 25 6 4.1433 -2.5254 0.0010 26 6 2.1247 -1.1702 -0.0005 27 8 1.4900 -2.2073 -0.0061 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.0292 3.6578 0.0738 32 1 -0.1413 4.0407 -1.4058 33 1 -1.3928 6.1481 -1.6001 34 1 -0.6102 8.1646 -0.4386 35 1 4.7474 7.8129 1.0778 36 1 2.7136 5.9328 1.1520 37 1 4.0540 2.1277 0.0001 38 1 4.3107 -2.8483 -1.0265 39 1 5.1005 -2.4374 0.5149 40 1 3.5209 -3.2577 0.5151 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189429579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:25 Heat of formation + Delta-G solvation = -32.522864 kcal Electronic energy + Delta-G solvation = -27394.653208 eV Core-core repulsion = 23368.723613 eV Total energy + Delta-G solvation = -4025.929596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.53530 -40.23017 -39.22844 -37.77767 -36.73665 -35.55190 -34.80422 -33.58480 -32.05450 -29.72928 -29.23369 -28.11051 -27.02527 -25.41346 -24.88488 -23.60771 -22.08299 -21.36195 -20.04831 -19.33493 -18.25229 -17.84305 -17.52818 -17.44468 -16.58579 -15.92810 -15.67025 -15.46813 -15.18738 -14.85438 -14.64806 -14.58645 -14.28067 -13.91536 -13.70092 -13.25229 -13.07577 -12.92153 -12.68793 -12.60869 -12.45588 -11.80389 -11.56021 -11.47222 -11.26464 -11.20409 -10.89008 -10.81987 -10.65080 -10.20886 -10.10847 -9.92268 -9.75745 -9.39672 -9.18138 -8.85202 -7.53949 -7.23666 -6.84149 -4.49767 0.24249 1.57636 1.63838 2.34313 2.51710 2.73762 2.91618 3.00992 3.01699 3.03462 3.14432 3.31362 3.85078 3.97508 4.43609 4.52187 4.72633 4.88576 5.03749 5.05051 5.15895 5.28186 5.35173 5.38908 5.51230 5.63527 5.74435 6.06902 6.10962 6.37491 6.44076 6.63919 6.80065 6.88524 6.91506 7.10137 7.14919 7.36624 7.41659 7.57005 7.73075 7.83544 7.89769 8.07138 8.20690 8.48879 8.75174 8.79235 10.06946 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.003106 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.192718 B = 9011.289624 C =10344.851503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.516 5.516 3 C 0.165 3.835 4 C 0.547 3.453 5 O -0.498 6.498 6 N -0.635 5.635 7 C 0.137 3.863 8 C -0.226 4.226 9 C -0.084 4.084 10 C -0.223 4.223 11 C 0.121 3.879 12 C -0.461 4.461 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.796 5.796 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.174 4.174 21 C -0.244 4.244 22 C 0.548 3.452 23 O -0.500 6.500 24 N -0.556 5.556 25 C 0.080 3.920 26 C 0.698 3.302 27 O -0.539 6.539 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.408 0.592 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.282 0.718 36 H 0.125 0.875 37 H 0.178 0.822 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -13.341 -0.739 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.237 5.237 3 C 0.057 3.943 4 C 0.331 3.669 5 O -0.374 6.374 6 N -0.280 5.280 7 C 0.046 3.954 8 C -0.247 4.247 9 C -0.102 4.102 10 C -0.243 4.243 11 C 0.117 3.883 12 C -0.491 4.491 13 H 0.098 0.902 14 C -0.141 4.141 15 N -0.422 5.422 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.190 1.190 20 C -0.196 4.196 21 C -0.274 4.274 22 C 0.342 3.658 23 O -0.374 6.374 24 N -0.300 5.300 25 C -0.061 4.061 26 C 0.401 3.599 27 O -0.412 6.412 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.244 0.756 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.143 0.857 37 H 0.195 0.805 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.410 -14.125 -0.773 14.152 hybrid contribution 0.951 0.652 0.527 1.268 sum 1.361 -13.473 -0.245 13.544 Atomic orbital electron populations 1.22342 0.73315 1.04637 1.05582 1.44522 1.10222 1.02510 1.66426 1.20670 0.91988 0.87476 0.94141 1.17655 0.87245 0.82657 0.79379 1.90846 1.12370 1.86391 1.47757 1.43239 1.10731 1.04308 1.69689 1.17535 0.94825 0.83293 0.99734 1.20244 0.99129 0.98093 1.07266 1.20417 0.97895 0.92911 0.99024 1.21090 1.01792 0.97083 1.04350 1.17354 0.90097 0.91938 0.88867 1.19534 0.93262 1.03440 1.32826 0.90231 1.25892 0.96596 0.96467 0.95117 1.69779 1.02878 1.35282 1.34244 0.86348 0.77821 0.81057 0.81436 1.18818 1.20299 1.18972 1.21092 1.03987 0.90905 1.03577 1.23323 0.91719 0.98792 1.13521 1.18528 0.87526 0.83674 0.76075 1.90872 1.12415 1.86813 1.47254 1.46302 1.05978 1.10735 1.67012 1.21939 0.98581 0.81519 1.04074 1.15631 0.81666 0.83919 0.78709 1.90999 1.65198 1.30389 1.54634 0.88697 0.89132 0.89168 0.75557 0.88049 0.88809 0.88656 0.90739 0.85721 0.80457 0.90683 0.88768 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.93 8.93 59.85 0.53 1.46 16 2 N -0.52 -6.44 3.03 -124.85 -0.38 -6.82 16 3 C 0.17 2.09 6.66 -81.90 -0.55 1.54 16 4 C 0.55 8.32 7.47 -12.14 -0.09 8.23 16 5 O -0.50 -8.63 11.02 5.36 0.06 -8.57 16 6 N -0.64 -10.36 5.27 -10.66 -0.06 -10.41 16 7 C 0.14 2.86 6.24 -83.81 -0.52 2.33 16 8 C -0.23 -4.80 8.66 -39.09 -0.34 -5.13 16 9 C -0.08 -1.78 10.01 -39.69 -0.40 -2.18 16 10 C -0.22 -5.14 9.79 -38.83 -0.38 -5.52 16 11 C 0.12 2.98 5.57 -106.85 -0.59 2.38 16 12 C -0.46 -11.41 9.06 -37.74 -0.34 -11.75 16 13 H 0.08 1.90 7.90 -52.48 -0.41 1.49 16 14 C 0.08 1.79 5.16 -17.34 -0.09 1.71 16 15 N -0.80 -18.81 10.94 55.55 0.61 -18.20 16 16 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.17 -4.05 8.60 -38.67 -0.33 -4.39 16 21 C -0.24 -2.85 9.76 -36.99 -0.36 -3.21 16 22 C 0.55 7.01 7.63 -12.76 -0.10 6.92 16 23 O -0.50 -7.44 16.75 5.20 0.09 -7.36 16 24 N -0.56 -6.60 2.96 -129.77 -0.38 -6.98 16 25 C 0.08 0.72 10.12 59.85 0.61 1.33 16 26 C 0.70 8.96 8.11 -87.61 -0.71 8.25 16 27 O -0.54 -7.67 14.97 5.29 0.08 -7.59 16 28 H 0.09 1.00 6.79 -51.93 -0.35 0.65 16 29 H 0.09 1.05 7.25 -51.93 -0.38 0.68 16 30 H 0.09 1.04 7.25 -51.93 -0.38 0.66 16 31 H 0.41 5.55 6.90 -40.82 -0.28 5.27 16 32 H 0.10 2.06 6.47 -52.49 -0.34 1.72 16 33 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 35 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 36 H 0.13 2.94 6.17 -52.48 -0.32 2.62 16 37 H 0.18 1.75 6.42 -52.49 -0.34 1.42 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.79 7.43 -51.93 -0.39 0.40 16 40 H 0.09 0.78 7.37 -51.93 -0.38 0.39 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -28.85 340.12 -7.53 -36.37 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.97 Total: 9.91 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.66 Total: 1.97 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.21 Total: -42.41 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.23 Total: -23.51 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.85 -7.53 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189429579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.851 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds