Wall clock time and date at job start Tue Mar 31 2020 04:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47230 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.19814 * 55.65655 * 5 4 3 7 7 C 1.53507 * 109.20078 * 296.36279 * 5 4 3 8 8 N 1.47217 * 107.72338 * 157.22591 * 7 5 4 9 9 N 1.39638 * 127.44070 * 246.88329 * 8 7 5 10 10 C 1.31141 * 108.03357 * 178.11356 * 9 8 7 11 11 C 1.40199 * 108.25238 * 0.49640 * 10 9 8 12 12 C 1.34407 * 107.56273 * 0.17501 * 11 10 9 13 13 C 1.51790 * 128.23075 * 179.03297 * 12 11 10 14 14 N 1.47326 * 106.90899 * 117.86313 * 13 12 11 15 15 S 1.65604 * 119.67341 * 256.99270 * 14 13 12 16 16 O 1.42097 * 106.40254 * 23.55273 * 15 14 13 17 17 O 1.42096 * 106.40398 * 156.47936 * 15 14 13 18 18 C 1.76206 * 107.21307 * 270.02014 * 15 14 13 19 19 H 1.07997 * 119.99879 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99397 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00708 * 359.97438 * 20 18 15 22 22 Si 1.86802 * 119.99620 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.46993 * 59.99977 * 22 20 18 24 24 H 1.48497 * 109.47123 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47245 * 300.00313 * 22 20 18 26 26 C 1.45310 * 120.65427 * 77.00652 * 14 13 12 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 4 3 2 33 33 H 1.08999 * 109.46857 * 59.99535 * 4 3 2 34 34 H 1.08993 * 109.80861 * 276.75498 * 7 5 4 35 35 H 1.08994 * 109.81122 * 37.65592 * 7 5 4 36 36 H 1.08001 * 125.86982 * 180.49134 * 10 9 8 37 37 H 1.08005 * 126.21609 * 180.20275 * 11 10 9 38 38 H 1.09006 * 109.96153 * 358.52036 * 13 12 11 39 39 H 1.08998 * 109.97136 * 237.21844 * 13 12 11 40 40 H 0.96997 * 120.00585 * 179.97438 * 21 20 18 41 41 H 1.08997 * 108.49712 * 171.13936 * 26 14 13 42 42 H 1.09000 * 108.37699 * 53.58951 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3571 3.4346 0.8488 7 6 3.3332 3.5917 -1.3001 8 7 3.2171 5.0391 -1.0576 9 7 2.0489 5.8035 -1.0258 10 6 2.3803 7.0396 -0.7395 11 6 3.7733 7.0979 -0.5922 12 6 4.2556 5.8613 -0.8035 13 6 5.7016 5.4003 -0.7801 14 7 5.8180 4.4097 0.3042 15 16 6.5098 4.8474 1.7438 16 8 6.3728 6.2584 1.8422 17 8 6.0059 3.9475 2.7212 18 6 8.2368 4.5233 1.6123 19 1 8.6409 4.1115 0.6994 20 6 9.0719 4.7945 2.6753 21 7 8.5797 5.2955 3.7872 22 14 10.9026 4.4502 2.5363 23 1 11.4726 5.2466 1.4199 24 1 11.5749 4.8265 3.8057 25 1 11.1158 3.0045 2.2722 26 6 5.3321 3.0523 0.1230 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9764 0.8892 33 1 3.8333 0.9766 -0.8908 34 1 4.0497 3.4080 -2.1006 35 1 2.3601 3.1835 -1.5732 36 1 1.6975 7.8699 -0.6353 37 1 4.3534 7.9767 -0.3520 38 1 6.3590 6.2471 -0.5827 39 1 5.9613 4.9406 -1.7336 40 1 9.1672 5.4860 4.5351 41 1 5.6555 2.4527 0.9739 42 1 5.7856 2.6426 -0.7796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:17 Heat of formation + Delta-G solvation = -55.787987 kcal Electronic energy + Delta-G solvation = -27389.454397 eV Core-core repulsion = 23497.959901 eV Total energy + Delta-G solvation = -3891.494496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09205 -38.54144 -36.80323 -35.40190 -34.04302 -33.91621 -33.11758 -31.90344 -31.05181 -29.61679 -26.37718 -26.19850 -25.80790 -24.07040 -22.89218 -20.98952 -20.56828 -19.32955 -18.86310 -17.66300 -17.13328 -16.47261 -16.34746 -16.04791 -15.28632 -15.10074 -14.75108 -14.53582 -14.26746 -14.14467 -13.80532 -13.49972 -13.22602 -13.08663 -12.79551 -12.58022 -12.40447 -12.09050 -11.93939 -11.73089 -11.52742 -11.43192 -11.26498 -11.25069 -11.05603 -10.93830 -10.67214 -10.42996 -10.35562 -10.29405 -10.11812 -9.70550 -9.30014 -9.06681 -8.93512 -8.49510 -8.19707 -6.76025 -5.40299 1.97631 2.31310 2.79299 3.03864 3.08863 3.13305 3.20816 3.50446 3.99836 4.39502 4.57733 4.62726 4.73581 4.85688 4.88554 4.90710 5.11910 5.19746 5.23464 5.26680 5.31941 5.38882 5.43040 5.51080 5.61188 5.66010 5.74447 5.77594 5.91059 5.94926 5.96887 6.02780 6.10875 6.18881 6.33938 6.41461 6.66248 7.01771 7.08997 7.25286 7.30533 7.41079 7.88443 8.07645 8.81736 10.17770 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013222 B = 0.004509 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.102662 B = 6208.616370 C = 7639.802823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.073 3.927 5 C -0.124 4.124 6 H 0.094 0.906 7 C 0.145 3.855 8 N -0.365 5.365 9 N -0.299 5.299 10 C 0.035 3.965 11 C -0.253 4.253 12 C 0.070 3.930 13 C 0.187 3.813 14 N -1.003 6.003 15 S 2.709 3.291 16 O -0.993 6.993 17 O -1.001 7.001 18 C -1.022 5.022 19 H 0.103 0.897 20 C 0.133 3.867 21 N -0.844 5.844 22 Si 0.921 3.079 23 H -0.263 1.263 24 H -0.276 1.276 25 H -0.264 1.264 26 C 0.127 3.873 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.180 0.820 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.292 0.708 41 H 0.098 0.902 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -7.233 -11.249 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.004 4.004 5 C -0.145 4.145 6 H 0.112 0.888 7 C 0.024 3.976 8 N -0.149 5.149 9 N -0.121 5.121 10 C -0.150 4.150 11 C -0.283 4.283 12 C -0.059 4.059 13 C 0.060 3.940 14 N -0.835 5.835 15 S 2.810 3.190 16 O -0.983 6.983 17 O -0.991 6.991 18 C -1.156 5.156 19 H 0.121 0.879 20 C -0.085 4.085 21 N -0.473 5.473 22 Si 0.745 3.255 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.188 1.188 26 C 0.000 4.000 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.197 0.803 37 H 0.169 0.831 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.575 -7.613 -10.635 16.210 hybrid contribution 2.197 -0.022 -0.052 2.198 sum -7.378 -7.636 -10.687 15.065 Atomic orbital electron populations 1.21738 0.93856 1.02028 1.03248 1.22446 0.95537 0.83842 1.00092 1.87910 1.20943 1.26337 1.95445 1.22341 0.81448 0.95427 1.01229 1.21839 0.98121 0.95279 0.99263 0.88787 1.22000 1.03661 0.74907 0.97049 1.48726 1.03749 1.07572 1.54864 1.77257 1.06671 1.03672 1.24468 1.23937 0.95620 0.95032 1.00449 1.21123 0.94548 0.97985 1.14614 1.21733 0.92236 0.91327 1.00586 1.20210 0.89298 0.92852 0.91668 1.58064 1.75468 1.16706 1.33252 1.00851 0.75658 0.72924 0.69593 1.93371 1.88551 1.32188 1.84227 1.93356 1.82508 1.66704 1.56534 1.30559 1.18007 1.58409 1.08600 0.87866 1.24756 1.01680 0.89343 0.92764 1.69884 1.38793 1.34758 1.03853 0.86193 0.80969 0.79794 0.78578 1.18744 1.20052 1.18838 1.20444 0.91461 0.84338 1.03771 0.91252 0.91785 0.91905 0.93460 0.93264 0.91787 0.92636 0.89612 0.87579 0.80347 0.83124 0.86384 0.89710 0.89707 0.88378 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.56 6.66 37.16 0.25 0.80 16 3 O -0.39 -4.99 9.57 -35.23 -0.34 -5.33 16 4 C 0.07 0.88 5.27 37.16 0.20 1.07 16 5 C -0.12 -1.84 2.42 -91.06 -0.22 -2.06 16 6 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 7 C 0.14 2.00 6.04 -3.39 -0.02 1.97 16 8 N -0.37 -6.20 3.66 -56.24 -0.21 -6.40 16 9 N -0.30 -5.30 12.63 30.74 0.39 -4.92 16 10 C 0.04 0.57 12.04 -17.11 -0.21 0.36 16 11 C -0.25 -4.36 10.78 -40.20 -0.43 -4.79 16 12 C 0.07 1.23 6.30 -82.07 -0.52 0.71 16 13 C 0.19 3.12 6.02 -4.20 -0.03 3.10 16 14 N -1.00 -19.40 2.99 -116.10 -0.35 -19.75 16 15 S 2.71 70.00 4.89 -107.50 -0.53 69.48 16 16 O -0.99 -28.16 16.81 -57.17 -0.96 -29.12 16 17 O -1.00 -28.62 16.62 -57.17 -0.95 -29.57 16 18 C -1.02 -27.04 9.75 30.60 0.30 -26.75 16 19 H 0.10 2.45 7.81 -52.49 -0.41 2.04 16 20 C 0.13 3.61 5.46 -17.82 -0.10 3.51 16 21 N -0.84 -24.33 13.19 55.43 0.73 -23.60 16 22 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 23 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 C 0.13 2.03 4.89 -5.39 -0.03 2.00 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.95 7.92 -51.93 -0.41 0.54 16 35 H 0.11 1.42 7.33 -51.93 -0.38 1.04 16 36 H 0.18 2.19 8.06 -52.49 -0.42 1.76 16 37 H 0.15 2.42 8.06 -52.48 -0.42 2.00 16 38 H 0.12 2.01 7.34 -51.93 -0.38 1.63 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.10 1.68 6.86 -51.93 -0.36 1.33 16 42 H 0.06 0.79 8.03 -51.93 -0.42 0.38 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -36.29 359.97 -8.36 -44.65 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.13 Total: 5.27 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -0.42 Total: -20.99 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.57 Total: -54.67 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -2.25 Total: -64.02 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 70.00 SS G_CDS: -0.53 Total: 69.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.29 -8.36 -44.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.141 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds