Wall clock time and date at job start Tue Mar 31 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47371 * 2 1 4 4 C 1.42902 * 113.99951 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46996 * 179.97438 * 4 3 2 6 6 N 1.34264 * 126.12374 * 270.04008 * 5 4 3 7 7 C 1.30499 * 109.26992 * 179.84194 * 6 5 4 8 8 N 1.35305 * 108.88103 * 358.73046 * 7 6 5 9 9 C 1.34031 * 126.12727 * 89.99775 * 5 4 3 10 10 C 1.51036 * 127.81617 * 3.36523 * 9 5 4 11 11 N 1.46865 * 107.90695 * 223.10555 * 10 9 5 12 12 S 1.65600 * 120.52785 * 93.66867 * 11 10 9 13 13 O 1.42103 * 106.39991 * 156.17844 * 12 11 10 14 14 O 1.42095 * 106.40377 * 23.25629 * 12 11 10 15 15 C 1.76199 * 107.21522 * 269.71449 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.45379 * 118.94270 * 273.38929 * 11 10 9 24 24 C 1.53599 * 109.43652 * 32.77513 * 23 11 10 25 25 C 1.46695 * 125.24175 * 183.52651 * 8 7 6 26 26 H 1.08999 * 109.47199 * 60.00406 * 1 2 3 27 27 H 1.08999 * 109.47639 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 300.00585 * 1 2 3 29 29 H 1.09006 * 109.47107 * 239.99139 * 2 1 3 30 30 H 1.09005 * 109.46783 * 119.99595 * 2 1 3 31 31 H 1.09001 * 109.47192 * 59.99077 * 4 3 2 32 32 H 1.08999 * 109.46912 * 299.99805 * 4 3 2 33 33 H 1.08001 * 125.55695 * 178.70946 * 7 6 5 34 34 H 1.08998 * 109.76949 * 103.57208 * 10 9 5 35 35 H 1.08996 * 109.95160 * 342.74092 * 10 9 5 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.47485 * 152.76592 * 23 11 10 38 38 H 1.09008 * 109.47505 * 272.77784 * 23 11 10 39 39 H 1.08996 * 109.40982 * 181.53205 * 24 23 11 40 40 H 1.08995 * 109.40371 * 301.29660 * 24 23 11 41 41 H 1.08997 * 109.22069 * 87.19827 * 25 8 7 42 42 H 1.08995 * 109.22561 * 327.85200 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8195 2.9160 -0.0012 6 7 4.0225 3.6807 -1.0860 7 6 4.3417 4.8883 -0.7081 8 7 4.3258 4.9426 0.6438 9 6 4.0237 3.6799 1.0811 10 6 3.9846 3.2602 2.5315 11 7 3.2574 4.2929 3.2809 12 16 1.6307 4.1455 3.5541 13 8 1.3453 4.9251 4.7074 14 8 1.3319 2.7595 3.4594 15 6 0.8031 4.9260 2.2087 16 1 1.3750 5.3805 1.4132 17 6 -0.5750 4.9512 2.1681 18 7 -1.2715 4.3975 3.1366 19 14 -1.4524 5.7719 0.7379 20 1 -0.4490 6.3146 -0.2128 21 1 -2.3045 4.7745 0.0418 22 1 -2.3015 6.8787 1.2473 23 6 3.9894 5.4436 3.7843 24 6 5.1313 5.7866 2.8159 25 6 4.5587 6.1490 1.4452 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5140 -0.8900 30 1 1.8932 -0.5138 0.8901 31 1 3.8333 0.9764 -0.8907 32 1 3.8340 0.9763 0.8892 33 1 4.5800 5.7102 -1.3670 34 1 5.0001 3.1723 2.9174 35 1 3.4697 2.3044 2.6284 36 1 -2.2409 4.4155 3.1082 37 1 3.3148 6.2957 3.8671 38 1 4.4026 5.2106 4.7657 39 1 5.6966 6.6323 3.2074 40 1 5.7923 4.9257 2.7161 41 1 3.6155 6.6786 1.5790 42 1 5.2622 6.7970 0.9224 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192951225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:31 Heat of formation + Delta-G solvation = -67.193178 kcal Electronic energy + Delta-G solvation = -28468.491667 eV Core-core repulsion = 24576.502605 eV Total energy + Delta-G solvation = -3891.989062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91583 -37.48807 -37.13178 -35.30522 -34.04450 -33.91177 -32.99051 -31.30832 -31.26323 -29.58446 -26.44303 -26.14743 -26.04214 -23.98361 -22.30129 -21.07408 -20.69336 -19.43698 -18.54319 -17.39687 -16.85353 -16.28999 -16.20488 -15.82476 -15.58626 -15.01680 -14.72100 -14.41076 -14.16136 -13.94753 -13.79024 -13.46555 -13.22467 -12.87976 -12.65608 -12.32933 -12.10434 -11.98196 -11.80648 -11.62641 -11.36555 -11.21297 -11.17416 -11.09007 -10.91032 -10.66133 -10.54043 -10.33591 -10.27736 -10.13722 -9.70259 -9.18445 -9.14445 -9.08636 -8.91184 -8.35233 -7.93292 -6.63947 -5.22791 2.13516 2.38914 3.06350 3.10197 3.18931 3.26516 3.28508 4.10682 4.39178 4.50205 4.62669 4.71211 4.79491 4.90589 4.98057 5.10146 5.28690 5.44308 5.45586 5.49819 5.54199 5.61038 5.65620 5.72739 5.73504 5.78105 5.84156 5.87197 6.00987 6.10484 6.13411 6.23556 6.36697 6.38104 6.55094 6.68368 6.80810 7.02216 7.38797 7.47307 7.52685 7.76493 8.04669 8.41611 8.97353 10.30105 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.008220 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.956153 B = 3405.612130 C = 4649.486989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.152 3.848 5 C 0.003 3.997 6 N -0.480 5.480 7 C 0.173 3.827 8 N -0.447 5.447 9 C 0.007 3.993 10 C 0.193 3.807 11 N -1.012 6.012 12 S 2.711 3.289 13 O -1.005 7.005 14 O -0.993 6.993 15 C -1.002 5.002 16 H 0.096 0.904 17 C 0.139 3.861 18 N -0.848 5.848 19 Si 0.916 3.084 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.124 3.876 24 C -0.144 4.144 25 C 0.107 3.893 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.200 0.800 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.289 0.711 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.879 -0.399 -4.030 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.285 6.285 4 C 0.074 3.926 5 C -0.125 4.125 6 N -0.199 5.199 7 C -0.110 4.110 8 N -0.130 5.130 9 C -0.111 4.111 10 C 0.066 3.934 11 N -0.845 5.845 12 S 2.812 3.188 13 O -0.995 6.995 14 O -0.983 6.983 15 C -1.136 5.136 16 H 0.115 0.885 17 C -0.079 4.079 18 N -0.478 5.478 19 Si 0.741 3.259 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.002 4.002 24 C -0.183 4.183 25 C -0.015 4.015 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.190 -0.864 -3.847 12.812 hybrid contribution -0.333 1.081 -0.672 1.316 sum 11.857 0.217 -4.520 12.691 Atomic orbital electron populations 1.21729 0.93973 1.01423 1.03911 1.22364 0.95785 0.84181 0.99104 1.88153 1.19698 1.25548 1.95129 1.20332 0.82480 0.89825 0.99941 1.19661 1.08495 0.96258 0.88133 1.70095 1.17542 1.01879 1.30352 1.24788 1.06558 0.97572 0.82053 1.45468 1.51784 1.08285 1.07497 1.21461 1.07277 0.84828 0.97548 1.19823 0.98068 0.92422 0.83103 1.58147 1.28450 1.28957 1.68968 1.00697 0.69010 0.73862 0.75193 1.93362 1.82103 1.72473 1.51592 1.93358 1.81392 1.35058 1.88517 1.30426 1.01881 1.53604 1.27705 0.88550 1.24652 0.96382 0.90965 0.95894 1.69898 1.09381 1.37537 1.30966 0.86192 0.79298 0.79268 0.81171 1.18817 1.19508 1.19852 1.21123 0.94038 0.89291 0.95762 1.22296 0.98872 1.03141 0.94018 1.21894 1.02669 0.84866 0.92071 0.92284 0.91772 0.90745 0.94273 0.93532 0.92653 0.92473 0.78309 0.89885 0.86936 0.90107 0.89718 0.91953 0.88926 0.90369 0.89164 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 37.15 0.38 -2.14 16 2 C 0.06 1.03 6.66 37.15 0.25 1.27 16 3 O -0.37 -7.60 10.33 -35.23 -0.36 -7.96 16 4 C 0.15 2.66 6.16 36.01 0.22 2.88 16 5 C 0.00 0.07 6.72 -83.01 -0.56 -0.49 16 6 N -0.48 -9.03 11.26 -10.92 -0.12 -9.15 16 7 C 0.17 2.71 12.49 -90.14 -1.13 1.58 16 8 N -0.45 -7.03 3.11 -113.83 -0.35 -7.38 16 9 C 0.01 0.12 6.34 -81.59 -0.52 -0.40 16 10 C 0.19 3.35 5.54 -4.83 -0.03 3.33 16 11 N -1.01 -19.85 2.88 -115.68 -0.33 -20.19 16 12 S 2.71 72.04 4.95 -107.50 -0.53 71.51 16 13 O -1.00 -29.04 17.08 -57.17 -0.98 -30.02 16 14 O -0.99 -28.87 16.64 -57.17 -0.95 -29.82 16 15 C -1.00 -28.15 9.75 30.60 0.30 -27.86 16 16 H 0.10 2.60 7.81 -52.49 -0.41 2.19 16 17 C 0.14 3.97 5.46 -17.82 -0.10 3.87 16 18 N -0.85 -25.28 13.19 55.43 0.73 -24.55 16 19 Si 0.92 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 C 0.12 1.90 5.79 -4.33 -0.03 1.88 16 24 C -0.14 -1.59 5.57 -26.47 -0.15 -1.73 16 25 C 0.11 1.30 6.44 -3.98 -0.03 1.28 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.86 7.50 -51.93 -0.39 0.47 16 33 H 0.20 2.24 8.06 -52.49 -0.42 1.81 16 34 H 0.08 1.11 6.93 -51.93 -0.36 0.75 16 35 H 0.11 2.11 6.21 -51.93 -0.32 1.79 16 36 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 38 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.84 6.39 -51.93 -0.33 0.51 16 41 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -38.87 357.57 -9.90 -48.76 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.98 Total: 3.17 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -1.37 Total: -16.54 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.08 Total: -61.27 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: -2.29 Total: -67.80 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 72.04 SS G_CDS: -0.53 Total: 71.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.87 -9.90 -48.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192951225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.430 kcal (2) G-P(sol) polarization free energy of solvation -38.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds