Wall clock time and date at job start Tue Mar 31 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42906 * 109.46892 * 2 1 4 4 C 1.42906 * 113.99797 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.34841 * 126.63523 * 0.02562 * 5 4 3 7 7 N 1.34302 * 108.07444 * 180.09397 * 6 5 4 8 8 C 1.29982 * 109.16022 * 0.16182 * 7 6 5 9 9 N 1.35435 * 108.78469 * 359.64802 * 8 7 6 10 10 C 1.46430 * 125.21113 * 180.70909 * 9 8 7 11 11 C 1.53803 * 109.20493 * 341.22073 * 10 9 8 12 12 N 1.47082 * 108.86716 * 45.99933 * 11 10 9 13 13 S 1.65606 * 120.97144 * 116.37028 * 12 11 10 14 14 O 1.42105 * 106.40008 * 156.18120 * 13 12 11 15 15 O 1.42098 * 106.40370 * 23.26306 * 13 12 11 16 16 C 1.76193 * 107.21910 * 269.72276 * 13 12 11 17 17 H 1.08002 * 120.00351 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00314 * 180.02562 * 16 13 12 19 19 N 1.31523 * 119.99660 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00522 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46991 * 89.99398 * 20 18 16 22 22 H 1.48494 * 109.47334 * 210.00187 * 20 18 16 23 23 H 1.48506 * 109.46800 * 329.99864 * 20 18 16 24 24 C 1.47443 * 118.05230 * 296.10235 * 12 11 10 25 25 H 1.08995 * 109.94146 * 162.92249 * 24 12 11 26 26 C 1.53002 * 109.93863 * 284.06655 * 24 12 11 27 27 H 1.08998 * 109.46978 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47384 * 300.00215 * 1 2 3 29 29 H 1.09001 * 109.46484 * 60.00379 * 1 2 3 30 30 H 1.08993 * 109.47678 * 239.99516 * 2 1 3 31 31 H 1.08997 * 109.47046 * 119.99168 * 2 1 3 32 32 H 1.09000 * 109.46907 * 59.99700 * 4 3 2 33 33 H 1.08996 * 109.47180 * 300.00364 * 4 3 2 34 34 H 1.08001 * 125.95806 * 0.05783 * 6 5 4 35 35 H 1.08997 * 109.51503 * 101.27879 * 10 9 8 36 36 H 1.09003 * 109.50931 * 221.37963 * 10 9 8 37 37 H 1.09004 * 109.67040 * 286.18311 * 11 10 9 38 38 H 1.09003 * 109.66352 * 165.81733 * 11 10 9 39 39 H 0.96997 * 119.99726 * 180.02562 * 19 18 16 40 40 H 1.09004 * 109.46841 * 59.99686 * 26 24 12 41 41 H 1.09006 * 109.47246 * 179.97438 * 26 24 12 42 42 H 1.08995 * 109.47083 * 300.00271 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 6 2.9814 3.9726 -0.0006 7 7 3.7227 5.0925 -0.0032 8 6 4.9820 4.7706 -0.0078 9 7 5.0870 3.4203 -0.0004 10 6 6.3452 2.6714 0.0124 11 6 7.4866 3.5919 -0.4516 12 7 7.3679 4.8834 0.2421 13 16 8.5467 5.4036 1.2825 14 8 8.4412 6.8198 1.3327 15 8 9.7387 4.7258 0.9095 16 6 8.1218 4.8157 2.8882 17 1 7.2248 4.2309 3.0293 18 6 8.9343 5.1022 3.9647 19 7 10.0269 5.8139 3.7928 20 14 8.4835 4.4796 5.6671 21 1 9.0908 3.1415 5.8817 22 1 8.9946 5.4253 6.6915 23 1 7.0064 4.3768 5.7814 24 6 6.1715 5.7041 -0.0205 25 1 6.0609 6.4597 0.7573 26 6 6.2912 6.3782 -1.3888 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.8935 -0.5139 -0.8898 31 1 1.8934 -0.5137 0.8900 32 1 3.8341 0.9765 -0.8891 33 1 3.8333 0.9768 0.8907 34 1 1.9024 3.9261 0.0002 35 1 6.5480 2.3174 1.0231 36 1 6.2685 1.8194 -0.6632 37 1 7.4170 3.7488 -1.5280 38 1 8.4468 3.1357 -0.2104 39 1 10.5987 6.0151 4.5500 40 1 6.3808 5.6158 -2.1627 41 1 5.4032 6.9822 -1.5753 42 1 7.1747 7.0163 -1.4034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:55 Heat of formation + Delta-G solvation = -68.850416 kcal Electronic energy + Delta-G solvation = -27124.808123 eV Core-core repulsion = 23232.747198 eV Total energy + Delta-G solvation = -3892.060925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -42.13859 -38.25348 -36.95385 -35.50873 -34.14264 -34.03692 -33.16298 -32.07177 -30.69398 -29.70475 -27.85324 -26.22032 -25.71602 -23.50606 -23.20875 -22.66446 -20.49178 -19.32460 -18.29958 -17.38758 -16.94982 -16.68163 -16.65893 -16.40643 -15.80322 -15.18295 -15.07073 -14.47623 -14.24285 -14.00292 -13.75352 -13.60439 -13.38110 -13.24199 -12.94677 -12.72550 -12.34764 -12.10767 -12.05015 -11.84276 -11.77621 -11.62455 -11.44981 -11.28843 -11.25435 -11.09139 -10.66092 -10.45596 -10.40779 -10.26767 -9.99390 -9.73517 -9.37161 -9.32366 -9.11681 -8.57161 -7.98472 -6.78665 -5.41856 1.99956 2.16657 2.66400 3.01094 3.08677 3.15824 3.37269 3.55094 3.95845 4.23856 4.48416 4.56994 4.61545 4.70520 4.74116 4.92612 4.97922 5.05770 5.06464 5.14718 5.19760 5.34133 5.43486 5.46050 5.52761 5.61301 5.66768 5.72768 5.82353 5.86948 5.91926 5.93917 6.05664 6.23553 6.35792 6.46345 6.63859 6.91777 6.97389 7.23705 7.26627 7.35913 7.87510 8.34547 8.80608 10.15268 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.004070 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.371569 B = 6878.197058 C = 7952.975465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.377 6.377 4 C 0.152 3.848 5 C -0.045 4.045 6 C 0.000 4.000 7 N -0.487 5.487 8 C 0.222 3.778 9 N -0.439 5.439 10 C 0.082 3.918 11 C 0.113 3.887 12 N -1.013 6.013 13 S 2.713 3.287 14 O -0.993 6.993 15 O -0.998 6.998 16 C -1.019 5.019 17 H 0.100 0.900 18 C 0.135 3.865 19 N -0.844 5.844 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.263 1.263 24 C 0.242 3.758 25 H 0.124 0.876 26 C -0.151 4.151 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.171 0.829 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.119 0.881 39 H 0.292 0.708 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 -11.538 -8.347 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.296 6.296 4 C 0.074 3.926 5 C -0.160 4.160 6 C -0.148 4.148 7 N -0.205 5.205 8 C -0.042 4.042 9 N -0.123 5.123 10 C -0.042 4.042 11 C -0.014 4.014 12 N -0.846 5.846 13 S 2.814 3.186 14 O -0.984 6.984 15 O -0.988 6.988 16 C -1.153 5.153 17 H 0.118 0.882 18 C -0.083 4.083 19 N -0.473 5.473 20 Si 0.743 3.257 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.187 1.187 24 C 0.134 3.866 25 H 0.142 0.858 26 C -0.211 4.211 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.188 0.812 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.485 -10.070 -8.559 17.509 hybrid contribution -0.173 -1.926 1.426 2.403 sum -11.659 -11.996 -7.133 18.185 Atomic orbital electron populations 1.21737 0.93472 1.02235 1.03387 1.22476 0.95772 0.83336 1.00179 1.87849 1.19690 1.26605 1.95453 1.20196 0.82013 0.90095 1.00274 1.20426 0.84544 0.96038 1.14943 1.22054 0.99413 0.86611 1.06771 1.70057 1.00415 1.29555 1.20491 1.23506 0.94605 0.81830 1.04281 1.44908 1.05481 1.07354 1.54562 1.22583 0.82253 0.95275 1.04086 1.21632 0.98417 0.83884 0.97496 1.58770 1.36639 1.27510 1.61697 1.00709 0.70800 0.73143 0.73908 1.93380 1.85770 1.31347 1.87859 1.93361 1.44422 1.76183 1.84861 1.30541 1.19682 1.49689 1.15366 0.88172 1.24730 0.92107 0.90471 1.01041 1.69884 1.11310 1.31280 1.34870 0.86175 0.79927 0.79273 0.80332 1.19171 1.19772 1.18656 1.19339 0.77838 0.89355 1.00104 0.85822 1.22070 1.03364 1.00581 0.95044 0.91082 0.91653 0.91719 0.93307 0.93231 0.92449 0.92262 0.81157 0.88803 0.88945 0.90656 0.86322 0.89738 0.92691 0.90664 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.30 9.68 -35.23 -0.34 -4.64 16 4 C 0.15 1.71 6.29 36.00 0.23 1.94 16 5 C -0.05 -0.67 6.95 -81.76 -0.57 -1.24 16 6 C 0.00 0.00 11.23 -17.68 -0.20 -0.19 16 7 N -0.49 -9.01 11.24 -10.58 -0.12 -9.13 16 8 C 0.22 4.00 7.06 -155.23 -1.10 2.90 16 9 N -0.44 -6.96 3.13 -108.85 -0.34 -7.30 16 10 C 0.08 1.09 6.95 -3.66 -0.03 1.07 16 11 C 0.11 1.70 6.36 -3.31 -0.02 1.68 16 12 N -1.01 -19.62 2.94 -106.70 -0.31 -19.93 16 13 S 2.71 68.73 5.00 -107.50 -0.54 68.20 16 14 O -0.99 -27.81 16.96 -57.17 -0.97 -28.78 16 15 O -1.00 -27.17 16.65 -57.17 -0.95 -28.12 16 16 C -1.02 -27.28 9.75 30.60 0.30 -26.98 16 17 H 0.10 2.52 7.81 -52.49 -0.41 2.11 16 18 C 0.13 3.68 5.46 -17.81 -0.10 3.58 16 19 N -0.84 -24.21 13.19 55.43 0.73 -23.47 16 20 Si 0.92 20.36 29.54 -169.99 -5.02 15.34 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 24 C 0.24 4.45 3.15 -68.31 -0.22 4.24 16 25 H 0.12 2.46 7.49 -51.93 -0.39 2.07 16 26 C -0.15 -2.33 9.43 37.16 0.35 -1.98 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.17 2.49 7.87 -52.49 -0.41 2.08 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.96 7.50 -51.93 -0.39 0.58 16 38 H 0.12 1.79 6.97 -51.93 -0.36 1.43 16 39 H 0.29 7.53 8.31 -40.82 -0.34 7.20 16 40 H 0.05 0.76 7.51 -51.93 -0.39 0.37 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 362.26 15.07 5.46 5.46 Total: -1.00 -35.33 362.26 -9.26 -44.59 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.14 Total: 2.71 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.72 Total: -14.92 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.04 Total: -59.83 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -2.26 Total: -61.54 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 68.73 SS G_CDS: -0.54 Total: 68.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.33 -9.26 -44.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.258 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds