Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00174 * 2 1 4 4 H 1.48495 * 109.47074 * 270.00289 * 3 2 1 5 5 H 1.48501 * 109.46970 * 29.99729 * 3 2 1 6 6 H 1.48494 * 109.47449 * 150.00043 * 3 2 1 7 7 C 1.38954 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99925 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99712 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99972 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99971 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.46920 * 180.02562 * 12 10 9 14 14 C 1.48721 * 111.01153 * 174.61753 * 13 12 10 15 15 C 1.54382 * 104.51583 * 158.97199 * 14 13 12 16 16 H 1.08997 * 110.32774 * 95.21332 * 15 14 13 17 17 N 1.46508 * 110.32183 * 217.32384 * 15 14 13 18 18 C 1.34774 * 119.99581 * 272.17041 * 17 15 14 19 19 O 1.21279 * 120.00015 * 355.07632 * 18 17 15 20 20 C 1.50704 * 119.99642 * 175.08113 * 18 17 15 21 21 C 1.52995 * 115.54972 * 304.44686 * 20 18 17 22 22 F 1.39898 * 109.47064 * 294.91351 * 21 20 18 23 23 C 1.53001 * 117.49682 * 158.77390 * 20 18 17 24 24 C 1.52998 * 117.49665 * 90.11819 * 20 18 17 25 25 C 1.54264 * 105.14722 * 336.26496 * 15 14 13 26 26 H 1.08997 * 110.32086 * 118.84711 * 25 15 14 27 27 O 1.42900 * 110.32455 * 241.05310 * 25 15 14 28 28 C 1.48552 * 111.00336 * 290.12763 * 13 12 10 29 29 H 0.96997 * 120.00183 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00336 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46666 * 60.00241 * 12 10 9 32 32 H 1.08996 * 109.46776 * 300.00608 * 12 10 9 33 33 H 1.08997 * 110.39119 * 40.24599 * 14 13 12 34 34 H 1.09003 * 110.50886 * 277.75215 * 14 13 12 35 35 H 0.97002 * 119.99780 * 92.16999 * 17 15 14 36 36 H 1.09000 * 109.46908 * 54.91837 * 21 20 18 37 37 H 1.09004 * 109.46889 * 174.91436 * 21 20 18 38 38 H 1.09004 * 117.49752 * 0.02562 * 23 20 18 39 39 H 1.09001 * 117.49703 * 145.01832 * 23 20 18 40 40 H 1.09006 * 117.50075 * 214.97602 * 24 20 18 41 41 H 1.09004 * 117.50418 * 359.97438 * 24 20 18 42 42 H 0.96704 * 113.99953 * 180.02562 * 27 25 15 43 43 H 1.09006 * 110.41667 * 82.18253 * 28 13 12 44 44 H 1.08999 * 110.41305 * 319.74042 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 7 2.1982 -5.9795 -0.0017 14 6 1.4943 -7.2831 0.1290 15 6 2.4972 -8.3211 -0.4187 16 1 3.0713 -8.7601 0.3972 17 7 1.7914 -9.3668 -1.1634 18 6 1.3181 -10.4511 -0.5178 19 8 1.5533 -10.6051 0.6619 20 6 0.4967 -11.4722 -1.2620 21 6 -0.7408 -10.9283 -1.9787 22 9 -1.6507 -10.4419 -1.0339 23 6 0.4063 -12.8777 -0.6643 24 6 1.2426 -12.6332 -1.9228 25 6 3.4257 -7.5267 -1.3603 26 1 4.4552 -7.5743 -1.0055 27 8 3.3347 -8.0356 -2.6925 28 6 2.9060 -6.0741 -1.3044 29 1 -0.4850 0.8400 0.0004 30 1 0.3533 -2.3906 -0.0005 31 1 0.6160 -4.9205 -0.8903 32 1 0.6180 -4.9208 0.8896 33 1 0.5823 -7.2838 -0.4679 34 1 1.2655 -7.4903 1.1744 35 1 1.6647 -9.2788 -2.1211 36 1 -0.4467 -10.1209 -2.6493 37 1 -1.2075 -11.7273 -2.5548 38 1 0.9406 -13.0637 0.2674 39 1 -0.5347 -13.4151 -0.7819 40 1 0.8514 -13.0099 -2.8680 41 1 2.3274 -12.6583 -1.8197 42 1 3.8978 -7.5742 -3.3291 43 1 3.7383 -5.3710 -1.3369 44 1 2.2157 -5.8855 -2.1266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220336330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -128.948855 kcal Electronic energy + Delta-G solvation = -28504.782377 eV Core-core repulsion = 24179.735307 eV Total energy + Delta-G solvation = -4325.047071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.158 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.91867 -40.54786 -39.29872 -37.95799 -36.85530 -35.83356 -34.40121 -33.81757 -31.30511 -30.38696 -28.43862 -27.87725 -26.52922 -24.44014 -23.57222 -22.91697 -21.52538 -20.65354 -20.02446 -19.20216 -17.92014 -17.87320 -17.48822 -16.33826 -16.20630 -16.17984 -15.93373 -15.74093 -15.21160 -14.94529 -14.78320 -14.68737 -14.32227 -14.14730 -13.84092 -13.61158 -13.34764 -13.01255 -12.89162 -12.25309 -12.12580 -12.11028 -11.93848 -11.79246 -11.55442 -11.48064 -11.35059 -11.12096 -10.96442 -10.90247 -10.68712 -10.40515 -10.23724 -10.13676 -10.00067 -9.51103 -9.21441 -8.58124 -8.09091 -7.97072 -6.43009 -3.83997 2.28498 2.76266 3.16400 3.17272 3.25368 3.31267 3.77573 3.88181 3.88728 4.09721 4.18818 4.27965 4.30986 4.46577 4.55301 4.57418 4.63283 4.82879 5.03952 5.10175 5.12482 5.15450 5.22780 5.25932 5.33996 5.42472 5.44648 5.63784 5.67921 5.75037 5.82068 5.91156 5.96268 6.18625 6.22498 6.28415 6.94624 7.07692 7.34903 7.40809 7.53729 8.04218 8.05521 8.59862 9.16393 9.52591 10.04064 10.74762 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.002380 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.542285 B =11762.103708 C =12327.325519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.036 3.964 13 N -0.478 5.478 14 C 0.019 3.981 15 C 0.151 3.849 16 H 0.106 0.894 17 N -0.704 5.704 18 C 0.552 3.448 19 O -0.533 6.533 20 C -0.206 4.206 21 C 0.106 3.894 22 F -0.207 7.207 23 C -0.135 4.135 24 C -0.143 4.143 25 C 0.094 3.906 26 H 0.080 0.920 27 O -0.568 6.568 28 C 0.006 3.994 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.410 0.590 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.387 0.613 43 H 0.106 0.894 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -23.796 -8.517 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.096 4.096 13 N -0.202 5.202 14 C -0.110 4.110 15 C 0.045 3.955 16 H 0.124 0.876 17 N -0.356 5.356 18 C 0.337 3.663 19 O -0.409 6.409 20 C -0.210 4.210 21 C 0.051 3.949 22 F -0.188 7.188 23 C -0.172 4.172 24 C -0.180 4.180 25 C 0.034 3.966 26 H 0.098 0.902 27 O -0.374 6.374 28 C -0.122 4.122 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.236 0.764 43 H 0.124 0.876 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.164 -23.994 -6.912 24.971 hybrid contribution -0.664 1.433 -1.313 2.054 sum -0.501 -22.562 -8.225 24.020 Atomic orbital electron populations 1.69612 1.05949 1.28189 1.50538 1.25271 0.95638 0.99742 0.97328 0.85853 0.79262 0.80807 0.78343 1.20446 1.20906 1.19394 1.19689 0.93336 0.82169 1.47634 0.87909 1.41858 1.09210 1.04572 1.64413 1.19649 0.88354 0.84428 0.84535 1.90494 1.13623 1.86971 1.55247 1.22078 0.94141 0.91475 1.01934 1.65130 1.23935 1.00486 1.30688 1.23646 0.95723 0.89360 1.02280 1.21774 0.92528 0.87084 0.94092 0.87558 1.45670 1.57361 1.20091 1.12522 1.19281 0.78906 0.81282 0.86794 1.90711 1.58149 1.76370 1.15641 1.22115 1.00213 0.91585 1.07054 1.21380 0.85421 0.99725 0.88347 1.92827 1.68446 1.89809 1.67731 1.23039 1.02408 0.93413 0.98318 1.23066 0.99706 0.97322 0.97916 1.22855 0.99054 0.92256 0.82388 0.90246 1.86226 1.70303 1.62061 1.18857 1.23919 1.00678 0.96506 0.91129 0.91848 0.77476 0.93116 0.88986 0.93212 0.89105 0.75348 0.89986 0.89644 0.87112 0.87551 0.87341 0.87669 0.76440 0.87586 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.45 10.45 7.58 -10.98 -0.08 10.37 16 11 O -0.58 -15.36 14.42 5.54 0.08 -15.29 16 12 C 0.04 0.64 5.30 -4.97 -0.03 0.62 16 13 N -0.48 -7.97 5.06 -231.27 -1.17 -9.14 16 14 C 0.02 0.27 6.22 -2.09 -0.01 0.26 16 15 C 0.15 1.90 3.42 -66.54 -0.23 1.68 16 16 H 0.11 1.46 7.54 -51.93 -0.39 1.07 16 17 N -0.70 -7.74 4.84 -52.46 -0.25 -7.99 16 18 C 0.55 6.72 7.13 -10.98 -0.08 6.64 16 19 O -0.53 -8.51 16.12 5.56 0.09 -8.42 16 20 C -0.21 -1.78 2.25 -155.66 -0.35 -2.13 16 21 C 0.11 0.79 7.34 37.16 0.27 1.06 16 22 F -0.21 -2.36 17.33 2.25 0.04 -2.32 16 23 C -0.13 -1.01 9.76 -26.70 -0.26 -1.27 16 24 C -0.14 -0.84 9.93 -26.70 -0.27 -1.10 16 25 C 0.09 1.09 4.42 -25.35 -0.11 0.98 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 O -0.57 -5.15 11.51 -35.23 -0.41 -5.56 16 28 C 0.01 0.09 5.54 -2.19 -0.01 0.08 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 31 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 32 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 33 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.41 3.86 6.97 -40.82 -0.28 3.58 16 36 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 37 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 38 H 0.11 1.00 7.83 -51.93 -0.41 0.59 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 2.17 9.12 45.56 0.42 2.59 16 43 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 44 H 0.05 0.72 7.76 -51.93 -0.40 0.32 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -34.46 372.68 -7.21 -41.67 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -5.45 Total: 14.40 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.40 Total: 9.23 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.76 Total: -55.29 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.24 Total: -29.27 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.46 -7.21 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220336330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.278 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds