Wall clock time and date at job start Tue Mar 31 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00089 * 2 1 4 4 H 1.48498 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47511 * 300.00032 * 3 2 1 6 6 H 1.48500 * 109.46827 * 60.00168 * 3 2 1 7 7 C 1.37874 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46957 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.75485 * 125.29953 * 11 10 9 13 13 N 1.35308 * 106.17710 * 180.12500 * 12 11 10 14 14 C 1.46504 * 125.86654 * 179.90135 * 13 12 11 15 15 H 1.09002 * 109.48170 * 4.71467 * 14 13 12 16 16 O 1.42907 * 109.47907 * 244.69131 * 14 13 12 17 17 C 1.42904 * 114.09490 * 178.84639 * 16 14 13 18 18 H 1.09003 * 109.48303 * 301.17047 * 17 16 14 19 19 C 1.53001 * 109.48070 * 181.13956 * 17 16 14 20 20 O 1.42900 * 109.46675 * 65.00403 * 19 17 16 21 21 C 1.53097 * 109.41223 * 61.15899 * 17 16 14 22 22 H 1.08998 * 109.52290 * 182.41922 * 21 17 16 23 23 O 1.42902 * 109.52381 * 62.29648 * 21 17 16 24 24 C 1.53176 * 109.16419 * 302.39010 * 21 17 16 25 25 H 1.08997 * 109.54559 * 297.11109 * 24 21 17 26 26 O 1.42900 * 109.54393 * 176.93693 * 24 21 17 27 27 C 1.53092 * 109.48693 * 124.74271 * 14 13 12 28 28 H 1.08998 * 109.52216 * 57.69400 * 27 14 13 29 29 O 1.42893 * 109.52677 * 297.50334 * 27 14 13 30 30 N 1.28710 * 108.26471 * 359.63959 * 13 12 11 31 31 N 1.28629 * 110.17819 * 0.22674 * 30 13 12 32 32 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47154 * 60.00240 * 9 7 2 34 34 H 1.09001 * 109.46891 * 299.99783 * 9 7 2 35 35 H 1.09004 * 109.47531 * 60.00337 * 10 9 7 36 36 H 1.09000 * 109.47331 * 300.00065 * 10 9 7 37 37 H 1.08006 * 126.90899 * 0.02562 * 12 11 10 38 38 H 1.08996 * 109.47137 * 185.00329 * 19 17 16 39 39 H 1.08997 * 109.46836 * 305.00504 * 19 17 16 40 40 H 0.96702 * 113.99578 * 180.02562 * 20 19 17 41 41 H 0.96692 * 114.00042 * 179.97438 * 23 21 17 42 42 H 0.96697 * 114.00303 * 179.97438 * 26 24 21 43 43 H 0.96701 * 114.00541 * 180.02562 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 6 1.6291 -5.9822 -0.8847 13 7 0.7559 -6.9405 -0.4976 14 6 0.5482 -8.2308 -1.1599 15 1 1.2670 -8.3425 -1.9717 16 8 -0.7788 -8.2877 -1.6871 17 6 -1.0797 -9.5007 -2.3802 18 1 -0.3823 -9.6290 -3.2080 19 6 -2.5091 -9.4375 -2.9222 20 8 -2.5996 -8.4067 -3.9077 21 6 -0.9510 -10.6829 -1.4160 22 1 -1.1381 -11.6128 -1.9530 23 8 -1.9019 -10.5425 -0.3586 24 6 0.4649 -10.7036 -0.8319 25 1 1.1875 -10.8604 -1.6327 26 8 0.5726 -11.7612 0.1230 27 6 0.7423 -9.3619 -0.1468 28 1 0.0512 -9.2281 0.6854 29 8 2.0860 -9.3427 0.3390 30 7 0.1429 -6.5262 0.5556 31 7 0.5590 -5.3526 0.8782 32 1 -0.4850 0.8400 -0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6247 -2.5571 0.8897 35 1 2.8719 -3.6044 0.8895 36 1 2.8719 -3.6044 -0.8905 37 1 2.2997 -6.0190 -1.7306 38 1 -2.7693 -10.3952 -3.3730 39 1 -3.1980 -9.2211 -2.1057 40 1 -3.4803 -8.3094 -4.2952 41 1 -1.8766 -11.2586 0.2907 42 1 1.4452 -11.8331 0.5335 43 1 2.2803 -10.0344 0.9862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254113039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:12 Heat of formation + Delta-G solvation = -130.827240 kcal Electronic energy + Delta-G solvation = -29120.061614 eV Core-core repulsion = 24782.560301 eV Total energy + Delta-G solvation = -4337.501313 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.82877 -40.96883 -38.19382 -37.30065 -36.70842 -35.88734 -34.45941 -33.29190 -31.82838 -31.60670 -30.53557 -29.11610 -26.92344 -25.14883 -24.76963 -22.99601 -21.99101 -21.54117 -21.08868 -19.87794 -18.80073 -18.24153 -17.95535 -17.68068 -17.33838 -17.15784 -16.24546 -16.02141 -15.67624 -15.29469 -14.87955 -14.60160 -14.52654 -14.30534 -14.08880 -14.03058 -13.60892 -13.27219 -13.16019 -12.84299 -12.57922 -12.07243 -12.00262 -11.74731 -11.47180 -11.33386 -10.94468 -10.83431 -10.77228 -10.60850 -10.50170 -10.42468 -10.28460 -10.20201 -9.93835 -9.59241 -9.40295 -8.96431 -8.42327 -8.21016 -5.86202 -3.89110 1.77441 2.17339 2.95237 2.96667 3.19040 3.39916 3.46739 3.48114 3.50871 3.56300 3.74528 3.88781 4.01099 4.11335 4.21374 4.46053 4.56439 4.60760 4.68179 4.77321 4.83736 4.89194 5.00685 5.22508 5.35734 5.48977 5.49596 5.67751 5.92570 6.39557 6.60747 6.62743 6.65158 6.82286 6.89216 6.92811 7.09323 7.19149 7.27288 7.84678 8.01282 8.17533 8.53686 9.04570 9.18884 9.73805 11.25091 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002671 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.100068 B =10481.884567 C =11439.738570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.032 4.032 11 C 0.013 3.987 12 C -0.056 4.056 13 N -0.290 5.290 14 C 0.343 3.657 15 H 0.106 0.894 16 O -0.346 6.346 17 C 0.106 3.894 18 H 0.090 0.910 19 C 0.090 3.910 20 O -0.566 6.566 21 C 0.088 3.912 22 H 0.084 0.916 23 O -0.541 6.541 24 C 0.044 3.956 25 H 0.080 0.920 26 O -0.554 6.554 27 C 0.042 3.958 28 H 0.101 0.899 29 O -0.548 6.548 30 N -0.078 5.078 31 N -0.252 5.252 32 H 0.259 0.741 33 H 0.014 0.986 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.185 0.815 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.385 0.615 41 H 0.387 0.613 42 H 0.386 0.614 43 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 -31.527 -6.791 32.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.124 4.124 12 C -0.204 4.204 13 N -0.087 5.087 14 C 0.199 3.801 15 H 0.123 0.877 16 O -0.263 6.263 17 C 0.047 3.953 18 H 0.108 0.892 19 C 0.012 3.988 20 O -0.372 6.372 21 C 0.028 3.972 22 H 0.102 0.898 23 O -0.348 6.348 24 C -0.017 4.017 25 H 0.098 0.902 26 O -0.361 6.361 27 C -0.019 4.019 28 H 0.119 0.881 29 O -0.355 6.355 30 N -0.057 5.057 31 N -0.120 5.120 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.233 0.767 41 H 0.236 0.764 42 H 0.235 0.765 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.628 -30.583 -6.475 31.303 hybrid contribution 1.488 -0.198 -0.282 1.527 sum -0.140 -30.781 -6.757 31.514 Atomic orbital electron populations 1.70006 1.06044 1.26316 1.50799 1.25027 0.94806 0.99173 0.95491 0.86550 0.80071 0.83971 0.77464 1.19746 1.21150 1.21084 1.21281 0.93016 0.90990 1.50535 0.92515 1.19045 0.93721 0.90107 0.98029 1.20207 0.97580 0.87963 1.01419 1.22618 0.98275 0.98192 0.93268 1.23278 1.01497 0.90244 1.05359 1.46754 1.27512 1.14099 1.20311 1.21488 0.87042 0.79516 0.92029 0.87680 1.88170 1.28570 1.37369 1.72206 1.22282 0.98726 0.82172 0.92103 0.89248 1.21958 0.94239 0.90993 0.91638 1.86516 1.36658 1.56704 1.57275 1.22451 0.86283 0.98866 0.89633 0.89796 1.86594 1.57257 1.52264 1.38650 1.23278 0.99139 0.87015 0.92235 0.90209 1.86459 1.38759 1.52024 1.58875 1.23226 0.86217 0.93670 0.98741 0.88085 1.86580 1.27357 1.58153 1.63389 1.78267 1.18035 1.08364 1.01077 1.75127 1.10667 1.02795 1.23456 0.93135 0.96713 0.95447 0.91257 0.91502 0.79788 0.91574 0.91046 0.76692 0.76400 0.76491 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.28 13.29 55.43 0.74 -27.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.52 -15.32 9.11 -34.44 -0.31 -15.63 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.80 4.95 -27.88 -0.14 0.66 16 10 C -0.03 -0.73 5.73 -27.88 -0.16 -0.89 16 11 C 0.01 0.27 6.50 -82.77 -0.54 -0.27 16 12 C -0.06 -0.98 11.49 -17.05 -0.20 -1.18 16 13 N -0.29 -4.99 3.22 -59.29 -0.19 -5.18 16 14 C 0.34 4.28 3.22 -3.99 -0.01 4.27 16 15 H 0.11 1.02 8.07 -51.93 -0.42 0.60 16 16 O -0.35 -4.67 10.17 -51.65 -0.53 -5.20 16 17 C 0.11 0.92 2.71 -26.68 -0.07 0.85 16 18 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 19 C 0.09 0.73 6.47 37.16 0.24 0.97 16 20 O -0.57 -5.55 13.62 -40.07 -0.55 -6.10 16 21 C 0.09 0.58 3.03 -26.59 -0.08 0.50 16 22 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 23 O -0.54 -4.54 12.06 -55.73 -0.67 -5.21 16 24 C 0.04 0.26 3.03 -26.55 -0.08 0.18 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 26 O -0.55 -2.55 12.72 -55.05 -0.70 -3.25 16 27 C 0.04 0.41 2.67 -26.59 -0.07 0.34 16 28 H 0.10 1.24 7.76 -51.93 -0.40 0.84 16 29 O -0.55 -4.90 13.22 -41.40 -0.55 -5.45 16 30 N -0.08 -1.63 12.88 60.35 0.78 -0.85 16 31 N -0.25 -5.88 12.40 33.29 0.41 -5.46 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 37 H 0.19 2.43 8.06 -52.48 -0.42 2.00 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 40 H 0.39 1.98 9.12 45.56 0.42 2.40 16 41 H 0.39 2.14 8.54 45.56 0.39 2.52 16 42 H 0.39 0.33 7.85 45.56 0.36 0.69 16 43 H 0.38 1.51 7.85 45.56 0.36 1.87 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -42.11 365.00 -5.35 -47.46 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.05 Total: 2.55 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.52 Total: -8.61 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.74 Total: -39.04 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -2.99 Total: -25.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -42.11 -5.35 -47.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254113039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.366 kcal (2) G-P(sol) polarization free energy of solvation -42.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds