Wall clock time and date at job start Tue Mar 31 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 C 1.35347 * 126.75004 * 125.00577 * 11 10 9 13 13 N 1.35315 * 106.17474 * 180.02562 * 12 11 10 14 14 C 1.46503 * 125.87127 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.52114 * 205.12514 * 14 13 12 16 16 C 1.53175 * 109.52215 * 84.99192 * 14 13 12 17 17 H 1.08993 * 109.54764 * 302.98415 * 16 14 13 18 18 O 1.42895 * 109.54140 * 63.25404 * 16 14 13 19 19 C 1.53180 * 109.03474 * 183.11617 * 16 14 13 20 20 H 1.09002 * 109.52713 * 297.01385 * 19 16 14 21 21 O 1.42902 * 109.52170 * 176.88851 * 19 16 14 22 22 C 1.53090 * 109.16224 * 56.98471 * 19 16 14 23 23 H 1.08990 * 109.48328 * 62.37284 * 22 19 16 24 24 C 1.53004 * 109.47816 * 182.40065 * 22 19 16 25 25 O 1.42907 * 109.46819 * 184.99971 * 24 22 19 26 26 O 1.42911 * 109.41497 * 302.38889 * 22 19 16 27 27 C 1.42901 * 114.09681 * 61.15859 * 26 22 19 28 28 H 1.08997 * 109.48152 * 178.86025 * 27 26 22 29 29 O 1.42904 * 109.47750 * 58.82270 * 27 26 22 30 30 N 1.28720 * 108.26465 * 359.97438 * 13 12 11 31 31 N 1.28633 * 110.17522 * 359.72830 * 30 13 12 32 32 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 34 34 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 35 35 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 36 36 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 37 37 H 1.08000 * 126.91877 * 0.02897 * 12 11 10 38 38 H 0.96703 * 113.99960 * 179.97438 * 18 16 14 39 39 H 0.96702 * 113.99631 * 179.97438 * 21 19 16 40 40 H 1.09003 * 109.46911 * 304.99061 * 24 22 19 41 41 H 1.08991 * 109.47551 * 64.99678 * 24 22 19 42 42 H 0.96701 * 113.99846 * 179.97438 * 25 24 22 43 43 H 0.96703 * 113.99796 * 60.06162 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 6 1.6260 -5.9792 -0.8886 13 7 0.7558 -6.9398 -0.5000 14 6 0.5481 -8.2294 -1.1636 15 1 -0.4555 -8.5940 -0.9448 16 6 1.5818 -9.2389 -0.6553 17 1 2.5857 -8.8514 -0.8283 18 8 1.3871 -9.4596 0.7430 19 6 1.4048 -10.5590 -1.4119 20 1 0.4189 -10.9720 -1.1982 21 8 2.4107 -11.4856 -0.9974 22 6 1.5371 -10.2986 -2.9146 23 1 2.5374 -9.9244 -3.1320 24 6 1.3021 -11.6019 -3.6809 25 8 1.5397 -11.3853 -5.0733 26 8 0.5677 -9.3283 -3.3158 27 6 0.7134 -8.0589 -2.6760 28 1 -0.0475 -7.3738 -3.0499 29 8 2.0109 -7.5299 -2.9569 30 7 0.1426 -6.5264 0.5535 31 7 0.5631 -5.3556 0.8809 32 1 -0.4850 -0.8401 -0.0004 33 1 0.6241 -2.5566 0.8903 34 1 0.6247 -2.5571 -0.8897 35 1 2.8720 -3.6043 -0.8894 36 1 2.8720 -3.6043 0.8906 37 1 2.2934 -6.0135 -1.7371 38 1 2.0086 -10.0901 1.1320 39 1 2.3585 -12.3454 -1.4368 40 1 1.9831 -12.3686 -3.3112 41 1 0.2728 -11.9290 -3.5346 42 1 1.4097 -12.1712 -5.6215 43 1 2.1855 -7.3956 -3.8985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254113798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:20 Heat of formation + Delta-G solvation = -143.906698 kcal Electronic energy + Delta-G solvation = -29314.339981 eV Core-core repulsion = 24976.271501 eV Total energy + Delta-G solvation = -4338.068481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.94891 -41.03487 -38.16635 -37.68838 -36.51542 -35.88118 -34.86180 -33.82783 -31.94494 -31.40344 -30.43681 -28.98787 -27.16035 -24.84794 -24.38106 -23.22834 -22.03327 -21.94097 -20.83606 -20.26525 -18.85142 -18.71229 -18.11975 -17.84988 -17.10796 -16.81873 -16.59454 -16.06815 -15.92542 -15.50541 -15.15200 -14.71035 -14.66550 -14.28413 -14.05524 -13.78004 -13.61912 -13.42873 -13.05978 -12.98778 -12.52954 -12.13767 -12.06445 -11.77225 -11.57200 -11.42568 -11.26715 -10.99729 -10.80101 -10.76008 -10.53185 -10.48600 -10.32011 -10.20500 -10.01322 -9.66705 -9.62056 -8.60545 -8.33492 -8.19338 -6.23609 -3.91977 1.90371 2.12687 2.86363 3.03248 3.12115 3.22253 3.26023 3.51008 3.54220 3.54427 3.72533 3.82099 4.12483 4.17678 4.26404 4.41064 4.48062 4.56400 4.64009 4.65008 4.76839 4.90562 5.00350 5.02046 5.25213 5.54096 5.56036 5.71402 5.95434 5.96468 6.52013 6.54090 6.70216 6.72912 6.84011 6.92264 6.99151 7.05061 7.15638 7.58199 7.73916 8.33578 8.59711 9.00352 9.01138 9.80849 11.17348 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023460 B = 0.002578 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.221878 B =10857.221450 C =11471.734478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.602 4.602 8 H 0.049 0.951 9 C 0.017 3.983 10 C -0.024 4.024 11 C -0.002 4.002 12 C -0.056 4.056 13 N -0.291 5.291 14 C 0.146 3.854 15 H 0.136 0.864 16 C 0.108 3.892 17 H 0.084 0.916 18 O -0.543 6.543 19 C 0.054 3.946 20 H 0.081 0.919 21 O -0.552 6.552 22 C 0.056 3.944 23 H 0.091 0.909 24 C 0.082 3.918 25 O -0.561 6.561 26 O -0.366 6.366 27 C 0.259 3.741 28 H 0.127 0.873 29 O -0.566 6.566 30 N -0.084 5.084 31 N -0.257 5.257 32 H 0.270 0.730 33 H 0.018 0.982 34 H 0.004 0.996 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.201 0.799 38 H 0.389 0.611 39 H 0.384 0.616 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.384 0.616 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -31.221 -11.093 33.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.898 3.102 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.067 0.933 9 C -0.020 4.020 10 C -0.063 4.063 11 C -0.138 4.138 12 C -0.204 4.204 13 N -0.087 5.087 14 C 0.041 3.959 15 H 0.154 0.846 16 C 0.047 3.953 17 H 0.102 0.898 18 O -0.349 6.349 19 C -0.007 4.007 20 H 0.099 0.901 21 O -0.360 6.360 22 C -0.002 4.002 23 H 0.109 0.891 24 C 0.004 3.996 25 O -0.367 6.367 26 O -0.285 6.285 27 C 0.161 3.839 28 H 0.144 0.856 29 O -0.377 6.377 30 N -0.063 5.063 31 N -0.125 5.125 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.022 0.978 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.217 0.783 38 H 0.238 0.762 39 H 0.234 0.766 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.232 0.768 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.661 -28.455 -9.033 29.973 hybrid contribution 1.218 -3.105 -1.767 3.775 sum 3.879 -31.561 -10.800 33.582 Atomic orbital electron populations 1.70749 1.06906 1.30756 1.46644 1.25835 0.96588 1.02656 0.93962 0.83547 0.74842 0.75409 0.76410 1.20874 1.21460 1.21545 1.22057 0.94225 0.92034 1.55707 0.93262 1.19147 0.94358 0.91965 0.96553 1.20017 0.97228 0.87587 1.01508 1.22649 0.98922 0.98792 0.93448 1.23861 1.01186 0.89894 1.05435 1.46747 1.27928 1.13327 1.20676 1.21970 1.02541 0.80948 0.90445 0.84610 1.21976 0.99168 0.91131 0.82997 0.89806 1.86595 1.60773 1.67593 1.19920 1.23133 0.92995 0.91799 0.92732 0.90095 1.86496 1.54023 1.27020 1.68418 1.22866 0.94968 0.89632 0.92712 0.89098 1.22122 1.00390 0.94385 0.82693 1.86544 1.92863 1.40025 1.17239 1.88287 1.53501 1.21193 1.65542 1.23337 0.87728 0.83746 0.89113 0.85606 1.86593 1.34410 1.84281 1.32449 1.78347 1.19044 1.08251 1.00640 1.75094 1.11300 1.03058 1.23048 0.91960 0.96412 0.97798 0.91456 0.91298 0.78260 0.76183 0.76624 0.91886 0.92224 0.76831 0.75083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.45 13.65 55.43 0.76 -28.70 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 26.16 29.90 -169.99 -5.08 21.08 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.89 9.11 -34.44 -0.31 -18.20 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.02 0.48 4.26 -27.88 -0.12 0.36 16 10 C -0.02 -0.54 5.73 -27.89 -0.16 -0.70 16 11 C 0.00 -0.03 6.50 -82.78 -0.54 -0.57 16 12 C -0.06 -0.94 10.30 -17.05 -0.18 -1.11 16 13 N -0.29 -4.64 3.19 -54.62 -0.17 -4.81 16 14 C 0.15 1.63 2.87 -67.79 -0.19 1.43 16 15 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.11 1.09 2.73 -26.55 -0.07 1.02 16 17 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 18 O -0.54 -6.34 13.25 -41.49 -0.55 -6.89 16 19 C 0.05 0.36 2.82 -26.59 -0.07 0.28 16 20 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 21 O -0.55 -3.03 12.92 -41.49 -0.54 -3.57 16 22 C 0.06 0.36 2.48 -26.68 -0.07 0.30 16 23 H 0.09 0.69 7.56 -51.93 -0.39 0.29 16 24 C 0.08 0.34 6.57 37.16 0.24 0.58 16 25 O -0.56 -3.14 13.63 -39.99 -0.54 -3.69 16 26 O -0.37 -2.95 10.32 -62.37 -0.64 -3.60 16 27 C 0.26 2.25 3.95 37.21 0.15 2.40 16 28 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 29 O -0.57 -4.59 8.85 -59.04 -0.52 -5.12 16 30 N -0.08 -1.69 13.17 60.35 0.79 -0.89 16 31 N -0.26 -5.86 12.40 33.29 0.41 -5.45 16 32 H 0.27 8.78 7.22 -40.82 -0.29 8.49 16 33 H 0.02 0.53 8.01 -51.93 -0.42 0.11 16 34 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 35 H 0.07 1.38 8.12 -51.93 -0.42 0.95 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.20 2.77 5.72 -52.49 -0.30 2.47 16 38 H 0.39 3.24 8.73 45.56 0.40 3.64 16 39 H 0.38 0.46 7.38 45.56 0.34 0.80 16 40 H 0.06 0.08 6.62 -51.93 -0.34 -0.26 16 41 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.38 0.35 9.12 45.56 0.42 0.77 16 43 H 0.40 1.79 9.12 45.56 0.42 2.21 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -41.11 357.25 -4.87 -45.98 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -2.74 Total: 4.18 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.42 Total: -13.92 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.79 Total: -39.85 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -2.80 Total: -22.86 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -41.11 -4.87 -45.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254113798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.924 kcal (2) G-P(sol) polarization free energy of solvation -41.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds