Wall clock time and date at job start Tue Mar 31 2020 05:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47258 * 326.96534 * 3 2 1 5 5 C 1.37098 * 120.00131 * 263.92732 * 4 3 2 6 6 H 1.08003 * 119.99651 * 199.75612 * 5 4 3 7 7 C 1.38948 * 120.00157 * 19.75619 * 5 4 3 8 8 N 1.31415 * 119.99549 * 21.74879 * 7 5 4 9 9 Si 1.86798 * 120.00345 * 201.74530 * 7 5 4 10 10 H 1.48501 * 109.46877 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47015 * 119.99917 * 9 7 5 12 12 H 1.48491 * 109.47292 * 240.00477 * 9 7 5 13 13 C 1.34781 * 119.99584 * 83.92833 * 4 3 2 14 14 O 1.21299 * 119.99574 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00503 * 359.97438 * 13 4 3 16 16 C 1.52994 * 109.47719 * 179.97438 * 15 13 4 17 17 C 1.50697 * 109.47556 * 179.97438 * 16 15 13 18 18 N 1.31501 * 118.68459 * 90.00163 * 17 16 15 19 19 C 1.33134 * 120.63117 * 180.02562 * 18 17 16 20 20 C 1.40943 * 118.81624 * 0.02562 * 19 18 17 21 21 C 1.41241 * 107.00115 * 180.02562 * 20 19 18 22 22 N 1.30229 * 108.46570 * 0.02562 * 21 20 19 23 23 N 1.36325 * 134.63767 * 180.02562 * 19 18 17 24 24 C 1.46500 * 125.86961 * 359.97438 * 23 19 18 25 25 C 1.40580 * 118.29108 * 359.97438 * 20 19 18 26 26 O 1.35367 * 120.79194 * 180.02562 * 25 20 19 27 27 N 1.32154 * 118.69265 * 270.29945 * 17 16 15 28 28 H 4.40644 * 5.51394 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46972 * 206.96692 * 3 2 1 30 30 H 1.08996 * 109.47264 * 86.97038 * 3 2 1 31 31 H 0.96996 * 119.99736 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47027 * 59.99281 * 15 13 4 33 33 H 1.09003 * 109.47166 * 300.00229 * 15 13 4 34 34 H 1.09008 * 109.46819 * 59.99702 * 16 15 13 35 35 H 1.09003 * 109.47032 * 300.00364 * 16 15 13 36 36 H 1.07990 * 125.76596 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46918 * 269.97271 * 24 23 19 38 38 H 1.08996 * 109.47527 * 29.97136 * 24 23 19 39 39 H 1.08997 * 109.47163 * 149.97841 * 24 23 19 40 40 H 0.96701 * 114.00649 * 90.00201 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1570 0.7529 5 6 3.4817 -1.0200 2.0722 6 1 4.1253 -1.7503 2.5400 7 6 3.0053 0.0585 2.8075 8 7 1.9239 0.6942 2.4158 9 14 3.9017 0.6046 4.3526 10 1 5.0819 -0.2689 4.5749 11 1 4.3504 2.0111 4.1936 12 1 2.9859 0.5057 5.5173 13 6 3.2436 -2.3568 0.1486 14 8 3.6479 -3.3155 0.7722 15 6 2.8618 -2.5076 -1.3013 16 6 3.0786 -3.9579 -1.7378 17 6 2.6962 -4.1088 -3.1876 18 7 3.6170 -3.9167 -4.1065 19 6 3.3216 -4.0394 -5.3988 20 6 2.0036 -4.3786 -5.7652 21 6 1.9703 -4.4419 -7.1758 22 7 3.1598 -4.1670 -7.6292 23 7 4.0260 -3.9105 -6.5589 24 6 5.4453 -3.5641 -6.6673 25 6 1.0573 -4.5732 -4.7440 26 8 -0.2227 -4.9008 -5.0385 27 7 1.4475 -4.4231 -3.4850 28 1 -1.0499 -0.0002 0.0003 29 1 3.0089 0.9168 0.4660 30 1 3.0093 -0.0535 -1.0262 31 1 1.5911 1.4469 2.9292 32 1 3.4808 -1.8489 -1.9104 33 1 1.8125 -2.2420 -1.4303 34 1 2.4598 -4.6170 -1.1286 35 1 4.1280 -4.2231 -1.6088 36 1 1.1048 -4.6783 -7.7768 37 1 5.5510 -2.4813 -6.7334 38 1 5.9764 -3.9279 -5.7877 39 1 5.8646 -4.0252 -7.5615 40 1 -0.3830 -5.8530 -5.0911 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256533080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:17 Heat of formation + Delta-G solvation = 117.795326 kcal Electronic energy + Delta-G solvation = -27050.358758 eV Core-core repulsion = 23063.240200 eV Total energy + Delta-G solvation = -3987.118559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.33656 -39.59605 -38.67501 -37.87372 -35.23204 -33.96236 -33.17166 -32.61332 -31.99824 -31.17272 -29.78769 -27.38078 -26.59307 -25.88153 -24.28741 -23.73225 -22.03777 -21.28577 -18.97037 -18.83143 -18.69488 -17.82387 -17.45250 -16.61010 -16.53616 -16.16173 -15.79123 -14.99193 -14.80572 -14.62676 -14.55718 -14.23388 -13.81511 -13.45588 -13.31630 -13.00539 -12.98593 -12.40814 -12.37061 -12.17404 -11.99059 -11.72687 -11.50090 -11.38842 -11.14504 -10.99349 -10.79166 -10.65754 -10.44448 -10.27702 -9.48575 -9.34574 -9.32068 -9.22037 -8.96804 -8.87171 -8.39356 -7.82464 -6.30048 -3.84028 0.23035 0.99982 1.75153 2.06351 3.05031 3.15494 3.27659 3.34027 3.47505 3.68302 3.73426 3.81630 3.96185 4.09354 4.21781 4.33911 4.48113 4.66535 4.89428 4.93723 5.01409 5.06031 5.15092 5.20805 5.48504 5.50859 5.57142 5.69317 5.85759 6.00492 6.06063 6.22415 6.36056 6.43348 6.49774 6.73339 6.83738 6.98547 7.06160 7.14818 7.59404 7.99977 8.08492 8.44583 8.85966 9.15797 9.38140 9.93043 10.70610 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018947 B = 0.002834 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.418383 B = 9878.598657 C =10385.567112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.116 4.116 3 C 0.233 3.767 4 N -0.439 5.439 5 C -0.316 4.316 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.860 5.860 9 Si 0.919 3.081 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.456 3.544 14 O -0.582 6.582 15 C -0.123 4.123 16 C -0.033 4.033 17 C 0.406 3.594 18 N -0.536 5.536 19 C 0.358 3.642 20 C -0.311 4.311 21 C 0.110 3.890 22 N -0.246 5.246 23 N -0.383 5.383 24 C 0.109 3.891 25 C 0.453 3.547 26 O -0.470 6.470 27 N -0.553 5.553 28 H 0.199 0.801 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.267 0.733 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.202 0.798 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -7.368 -19.479 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.118 4.118 3 C 0.110 3.890 4 N -0.158 5.158 5 C -0.443 4.443 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.497 5.497 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.466 6.466 15 C -0.164 4.164 16 C -0.072 4.072 17 C 0.136 3.864 18 N -0.259 5.259 19 C 0.110 3.890 20 C -0.326 4.326 21 C -0.088 4.088 22 N -0.060 5.060 23 N -0.173 5.173 24 C -0.031 4.031 25 C 0.255 3.745 26 O -0.278 6.278 27 N -0.280 5.280 28 H 0.216 0.784 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.219 0.781 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 1.466 -6.787 -19.324 20.534 hybrid contribution -0.868 -0.014 0.552 1.028 sum 0.599 -6.802 -18.772 19.976 Atomic orbital electron populations 1.24259 0.95367 1.02414 1.05480 1.23125 0.94335 0.98393 0.95920 1.18200 0.84360 0.92441 0.94039 1.43671 1.55968 1.05679 1.10463 1.19681 1.28283 1.10640 0.85719 0.87788 1.25302 0.95002 0.97848 0.99125 1.70107 1.17884 1.21548 1.40179 0.85989 0.79784 0.78479 0.81209 1.19190 1.20688 1.20937 1.19866 0.84186 0.83137 0.88310 1.90526 1.51182 1.37982 1.66959 1.21478 1.03158 0.95457 0.96338 1.20258 1.04307 0.98486 0.84188 1.23219 0.81950 0.84928 0.96259 1.67474 1.38182 1.22744 0.97489 1.19093 0.88609 0.93084 0.88210 1.20339 0.96255 1.19751 0.96219 1.23771 0.96034 0.97217 0.91759 1.76967 1.00902 1.18218 1.09891 1.48308 1.09951 1.59074 0.99972 1.21923 0.74479 1.01995 1.04741 1.18976 0.82934 0.86559 0.86075 1.84634 1.22105 1.30335 1.90746 1.68002 1.19288 1.20615 1.20128 0.78422 0.87638 0.92042 0.92249 0.90204 0.89625 0.87842 0.88024 0.78127 0.90573 0.88697 0.89100 0.72739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.45 19.25 29.55 0.57 -4.88 16 2 C -0.12 -2.64 10.75 -37.12 -0.40 -3.04 16 3 C 0.23 5.17 4.91 -6.83 -0.03 5.14 16 4 N -0.44 -11.03 2.60 -117.94 -0.31 -11.34 16 5 C -0.32 -8.64 9.28 -14.93 -0.14 -8.77 16 6 H 0.10 2.98 7.42 -52.48 -0.39 2.59 16 7 C 0.03 0.83 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.64 9.59 55.50 0.53 -22.11 16 9 Si 0.92 20.39 29.61 -169.99 -5.03 15.36 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.46 10.89 7.56 -10.99 -0.08 10.81 16 14 O -0.58 -15.57 15.65 5.54 0.09 -15.48 16 15 C -0.12 -2.30 4.29 -27.89 -0.12 -2.42 16 16 C -0.03 -0.55 4.91 -27.89 -0.14 -0.69 16 17 C 0.41 6.38 6.88 -157.14 -1.08 5.30 16 18 N -0.54 -8.13 10.35 -10.10 -0.10 -8.23 16 19 C 0.36 4.92 8.04 -156.25 -1.26 3.66 16 20 C -0.31 -3.79 6.19 -106.85 -0.66 -4.45 16 21 C 0.11 1.05 12.05 -17.09 -0.21 0.84 16 22 N -0.25 -2.73 12.45 30.81 0.38 -2.35 16 23 N -0.38 -4.50 4.05 -67.24 -0.27 -4.77 16 24 C 0.11 0.88 11.47 59.85 0.69 1.56 16 25 C 0.45 5.69 7.90 -16.31 -0.13 5.56 16 26 O -0.47 -4.39 13.58 -17.79 -0.24 -4.63 16 27 N -0.55 -8.44 10.32 -10.53 -0.11 -8.55 16 28 H 0.20 3.47 7.80 -54.10 -0.42 3.05 16 29 H 0.11 2.45 6.60 -51.93 -0.34 2.11 16 30 H 0.06 1.15 6.70 -51.93 -0.35 0.80 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 33 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 34 H 0.10 1.80 8.10 -51.92 -0.42 1.38 16 35 H 0.10 1.70 8.10 -51.93 -0.42 1.27 16 36 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.41 1.49 9.06 45.56 0.41 1.90 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -35.34 357.32 -6.28 -41.63 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.53 Total: 5.74 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -3.08 Total: 9.35 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.12 Total: -57.35 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.15 Total: -20.11 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.34 -6.28 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256533080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.421 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds