Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 O 1.21613 * 119.99624 * 173.00683 * 3 2 1 5 5 N 1.34776 * 120.00255 * 353.00170 * 3 2 1 6 6 C 1.47086 * 120.96358 * 180.02562 * 5 3 2 7 7 C 1.53335 * 109.18036 * 116.62634 * 6 5 3 8 8 N 1.46207 * 109.25924 * 45.33034 * 7 6 5 9 9 C 1.35001 * 125.39549 * 341.99526 * 8 7 6 10 10 N 1.30360 * 107.83098 * 180.28137 * 9 8 7 11 11 N 1.28893 * 109.74106 * 359.48317 * 10 9 8 12 12 C 1.31871 * 109.51890 * 0.05929 * 11 10 9 13 13 C 1.47448 * 126.62238 * 180.15042 * 12 11 10 14 14 O 1.21601 * 120.00113 * 180.02562 * 13 12 11 15 15 N 1.34776 * 119.99858 * 0.02704 * 13 12 11 16 16 C 1.47584 * 134.49098 * 179.97438 * 15 13 12 17 17 C 1.53947 * 86.11565 * 155.35611 * 16 15 13 18 18 C 1.50697 * 113.73728 * 137.95278 * 17 16 15 19 19 H 1.08000 * 120.00521 * 359.97438 * 18 17 16 20 20 C 1.37881 * 119.99910 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00457 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47090 * 59.99825 * 22 20 18 24 24 H 1.48500 * 109.47260 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47307 * 300.00349 * 22 20 18 26 26 C 1.47576 * 134.49404 * 359.97438 * 15 13 12 27 27 C 1.47508 * 120.95878 * 0.02562 * 5 3 2 28 28 H 4.39218 * 13.43039 * 359.97438 * 4 2 1 29 29 H 1.08996 * 109.52225 * 236.54245 * 6 5 3 30 30 H 1.09003 * 109.51839 * 356.71672 * 6 5 3 31 31 H 1.08997 * 109.51634 * 165.46284 * 7 6 5 32 32 H 1.08996 * 109.51884 * 285.58072 * 7 6 5 33 33 H 1.09001 * 113.76908 * 41.05531 * 16 15 13 34 34 H 1.08997 * 113.76763 * 269.65793 * 16 15 13 35 35 H 1.08999 * 113.74195 * 269.25717 * 17 16 15 36 36 H 0.97003 * 120.00094 * 180.02562 * 21 20 18 37 37 H 1.09003 * 113.77250 * 90.33955 * 26 15 13 38 38 H 1.08995 * 113.76824 * 318.94314 * 26 15 13 39 39 H 1.08999 * 109.94318 * 103.72237 * 27 5 3 40 40 H 1.08997 * 109.95358 * 342.46444 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2136 1.0463 -0.1282 5 7 3.2805 -1.1575 0.1422 6 6 4.7512 -1.1813 0.1458 7 6 5.2437 -1.6761 1.5110 8 7 4.4657 -2.8485 1.9084 9 6 3.2732 -3.2087 1.3880 10 7 2.8865 -4.2972 1.9920 11 7 3.7724 -4.6526 2.8583 12 6 4.7728 -3.7936 2.8431 13 6 5.9862 -3.8418 3.6795 14 8 6.8377 -2.9812 3.5657 15 7 6.1516 -4.8397 4.5701 16 6 7.2045 -5.1955 5.5412 17 6 6.0973 -5.9380 6.3111 18 6 6.5258 -7.2802 6.8457 19 1 7.5309 -7.6350 6.6718 20 6 5.6345 -8.0555 7.5569 21 7 4.4104 -7.6238 7.7682 22 14 6.1653 -9.7196 8.2190 23 1 7.3077 -9.5402 9.1507 24 1 5.0310 -10.3497 8.9412 25 1 6.5791 -10.5922 7.0908 26 6 5.3525 -6.0156 4.9661 27 6 2.5651 -2.4380 0.2988 28 1 -1.0500 -0.0011 -0.0003 29 1 5.1065 -1.8535 -0.6352 30 1 5.1321 -0.1764 -0.0365 31 1 6.2986 -1.9418 1.4430 32 1 5.1136 -0.8880 2.2526 33 1 7.6146 -4.3398 6.0776 34 1 7.9732 -5.8525 5.1345 35 1 5.5936 -5.3232 7.0570 36 1 3.7834 -8.1690 8.2689 37 1 5.5772 -6.9136 4.3905 38 1 4.2840 -5.8148 5.0434 39 1 2.5977 -2.9987 -0.6353 40 1 1.5302 -2.2530 0.5867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268857992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = 128.431483 kcal Electronic energy + Delta-G solvation = -27202.906669 eV Core-core repulsion = 23216.249329 eV Total energy + Delta-G solvation = -3986.657340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.40537 -40.47203 -39.38613 -37.35389 -37.09599 -34.77416 -33.56921 -32.72122 -31.85988 -30.64115 -29.24386 -27.19239 -25.48672 -25.39398 -25.12776 -23.57218 -22.91974 -20.70870 -20.49349 -19.02904 -18.58432 -17.60834 -17.22859 -17.02030 -16.83363 -16.44732 -16.24851 -15.85766 -15.43554 -14.88799 -14.74498 -14.55128 -14.39282 -13.88346 -13.39418 -13.36112 -12.99886 -12.67213 -12.45354 -12.20029 -11.74631 -11.58717 -11.57043 -11.43416 -11.30326 -10.96566 -10.92860 -10.88145 -10.61488 -10.38720 -10.36997 -9.98719 -9.69074 -9.35728 -9.32549 -9.10571 -8.58025 -8.02986 -6.15683 -4.22335 1.03814 1.14894 1.61310 2.02616 2.32664 2.40753 3.02349 3.26744 3.28428 3.33242 3.35375 3.43504 3.49086 3.65489 3.93660 4.33197 4.38406 4.47359 4.49360 4.71645 4.78427 4.97313 5.05715 5.11932 5.14419 5.19061 5.53346 5.55319 5.77531 6.01902 6.05105 6.19226 6.28478 6.40433 6.52164 6.62331 6.66172 6.67120 6.92474 7.34787 7.53504 7.80576 8.12028 8.15736 8.32770 8.54718 8.80367 9.44398 10.93806 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.002601 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.575953 B =10764.346547 C =11494.154808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.240 4.240 3 C 0.643 3.357 4 O -0.512 6.512 5 N -0.615 5.615 6 C 0.100 3.900 7 C 0.091 3.909 8 N -0.438 5.438 9 C 0.159 3.841 10 N -0.274 5.274 11 N -0.231 5.231 12 C 0.154 3.846 13 C 0.609 3.391 14 O -0.562 6.562 15 N -0.608 5.608 16 C 0.108 3.892 17 C 0.033 3.967 18 C -0.522 4.522 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.882 5.882 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.112 3.888 27 C 0.205 3.795 28 H 0.237 0.763 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.265 0.735 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 11.925 -17.058 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.243 4.243 3 C 0.432 3.568 4 O -0.388 6.388 5 N -0.350 5.350 6 C -0.022 4.022 7 C -0.032 4.032 8 N -0.129 5.129 9 C -0.109 4.109 10 N -0.119 5.119 11 N -0.076 5.076 12 C -0.113 4.113 13 C 0.394 3.606 14 O -0.441 6.441 15 N -0.339 5.339 16 C -0.012 4.012 17 C 0.013 3.987 18 C -0.560 4.560 19 H 0.082 0.918 20 C -0.135 4.135 21 N -0.518 5.518 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.010 4.010 27 C 0.080 3.920 28 H 0.254 0.746 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.747 11.900 -16.816 21.388 hybrid contribution 0.647 0.064 -0.008 0.650 sum -5.101 11.964 -16.824 21.265 Atomic orbital electron populations 1.25383 0.95915 0.96042 0.91766 1.21196 0.93156 1.03863 1.06078 1.14713 0.83207 0.82854 0.76028 1.90885 1.68833 1.30449 1.48594 1.48052 1.07178 1.06698 1.73028 1.22112 0.78525 1.05631 0.95939 1.22570 0.97643 0.85625 0.97409 1.45812 1.17013 1.21308 1.28757 1.24782 0.87274 0.97468 1.01353 1.74331 1.21796 1.09592 1.06142 1.75075 0.98189 1.20703 1.13664 1.24520 1.00146 0.89881 0.96766 1.16005 0.82553 0.83215 0.78869 1.90754 1.43801 1.40193 1.69400 1.50325 1.25569 1.23885 1.34165 1.23711 0.93173 0.97592 0.86771 1.20556 0.90321 0.96114 0.91687 1.20864 0.98556 1.01331 1.35279 0.91833 1.25025 0.94865 0.98347 0.95251 1.69943 1.04534 1.37826 1.39537 0.86593 0.78167 0.83691 0.79191 1.20104 1.21215 1.20054 1.23942 0.97305 0.83681 0.96047 1.20258 0.95822 0.81350 0.94526 0.74643 0.88890 0.85545 0.85792 0.88253 0.91496 0.90024 0.91525 0.92484 0.90235 0.90279 0.87027 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 19.25 29.55 0.57 0.19 16 2 C -0.24 -2.01 11.67 -38.83 -0.45 -2.46 16 3 C 0.64 6.62 7.56 -14.33 -0.11 6.51 16 4 O -0.51 -6.80 16.52 5.27 0.09 -6.71 16 5 N -0.62 -5.41 2.97 -176.23 -0.52 -5.93 16 6 C 0.10 0.79 6.43 -3.55 -0.02 0.77 16 7 C 0.09 0.97 6.38 -4.03 -0.03 0.95 16 8 N -0.44 -6.22 3.14 -111.33 -0.35 -6.57 16 9 C 0.16 2.08 7.87 -155.40 -1.22 0.86 16 10 N -0.27 -4.57 12.21 32.77 0.40 -4.17 16 11 N -0.23 -4.42 10.70 32.38 0.35 -4.07 16 12 C 0.15 2.78 7.88 -154.50 -1.22 1.56 16 13 C 0.61 12.02 8.05 -12.51 -0.10 11.92 16 14 O -0.56 -11.39 16.09 5.28 0.08 -11.31 16 15 N -0.61 -12.50 3.61 -179.69 -0.65 -13.15 16 16 C 0.11 2.17 8.39 -2.97 -0.02 2.14 16 17 C 0.03 0.76 3.62 -90.84 -0.33 0.43 16 18 C -0.52 -13.14 8.77 -34.44 -0.30 -13.45 16 19 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.88 -24.16 13.27 55.43 0.74 -23.43 16 22 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C 0.11 2.45 7.46 -2.98 -0.02 2.43 16 27 C 0.21 1.69 6.64 -4.47 -0.03 1.66 16 28 H 0.24 0.18 7.80 -54.09 -0.42 -0.24 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.13 0.93 7.01 -51.93 -0.36 0.56 16 31 H 0.12 1.32 7.27 -51.93 -0.38 0.95 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 35 H 0.07 1.69 8.13 -51.93 -0.42 1.27 16 36 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16 38 H 0.08 1.84 7.51 -51.93 -0.39 1.45 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.12 0.84 6.63 -51.93 -0.34 0.50 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.29 354.03 -7.33 -40.63 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.40 Total: -0.86 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -3.39 Total: 15.20 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.04 Total: -57.33 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.29 -7.33 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268857992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.057 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds