Wall clock time and date at job start Tue Mar 31 2020 04:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47459 * 2 1 4 4 O 1.42098 * 110.54017 * 291.62450 * 3 2 1 5 5 O 1.42104 * 110.54088 * 68.37177 * 3 2 1 6 6 N 1.65595 * 104.45072 * 179.97438 * 3 2 1 7 7 C 1.46926 * 120.63134 * 269.72046 * 6 3 2 8 8 C 1.52757 * 109.00919 * 233.58400 * 7 6 3 9 9 C 1.53046 * 109.38399 * 305.58499 * 8 7 6 10 10 C 1.50701 * 109.44895 * 181.25183 * 9 8 7 11 11 O 1.21291 * 120.00111 * 247.76532 * 10 9 8 12 12 N 1.34775 * 119.99980 * 67.76686 * 10 9 8 13 13 C 1.37096 * 119.99651 * 3.68254 * 12 10 9 14 14 H 1.08000 * 120.00657 * 14.07884 * 13 12 10 15 15 C 1.38952 * 119.99719 * 194.07965 * 13 12 10 16 16 N 1.31417 * 119.99978 * 11.48135 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 191.47859 * 15 13 12 18 18 H 1.48494 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46811 * 120.00113 * 17 15 13 20 20 H 1.48495 * 109.47132 * 239.99947 * 17 15 13 21 21 C 1.46498 * 120.00117 * 183.67601 * 12 10 9 22 22 C 1.47203 * 109.46861 * 83.74534 * 21 12 10 23 23 N 9.91224 * 136.11012 * 20.02890 * 2 1 3 24 24 C 1.53039 * 109.53384 * 61.24086 * 9 8 7 25 25 C 1.46926 * 120.63231 * 89.99836 * 6 3 2 26 26 H 1.08993 * 109.47231 * 300.00077 * 1 2 3 27 27 H 1.09007 * 109.46949 * 60.00013 * 1 2 3 28 28 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 239.99831 * 2 1 3 30 30 H 1.09005 * 109.46518 * 120.00282 * 2 1 3 31 31 H 1.09000 * 109.58676 * 353.42068 * 7 6 3 32 32 H 1.09006 * 109.58645 * 113.84110 * 7 6 3 33 33 H 1.09004 * 109.56279 * 185.55656 * 8 7 6 34 34 H 1.09000 * 109.36189 * 65.50040 * 8 7 6 35 35 H 1.08995 * 109.46221 * 301.22323 * 9 8 7 36 36 H 0.97002 * 119.99641 * 179.97438 * 16 15 13 37 37 H 1.08993 * 109.47086 * 203.74109 * 21 12 10 38 38 H 1.08996 * 109.47421 * 323.74705 * 21 12 10 39 39 H 1.09002 * 109.49956 * 178.68121 * 24 9 8 40 40 H 1.09003 * 109.49950 * 58.58508 * 24 9 8 41 41 H 1.09000 * 109.59273 * 246.16202 * 25 6 3 42 42 H 1.09005 * 109.58213 * 6.43931 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 -1.2370 5 8 1.8386 2.3438 1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.5301 1.5060 1.2653 8 6 5.6193 2.5769 1.2512 9 6 6.4857 2.4038 0.0015 10 6 7.5795 3.4404 0.0018 11 8 7.5774 4.3246 -0.8285 12 7 8.5602 3.3850 0.9246 13 6 8.6052 2.3438 1.8153 14 1 8.0074 1.4607 1.6445 15 6 9.4198 2.4248 2.9381 16 7 9.9699 3.5713 3.2695 17 14 9.7330 0.9039 3.9764 18 1 9.0042 -0.2516 3.3943 19 1 11.1887 0.6104 3.9980 20 1 9.2558 1.1436 5.3620 21 6 9.5783 4.4372 0.9757 22 6 9.0671 5.5770 1.7544 23 7 8.6735 6.4563 2.3536 24 6 5.6204 2.5760 -1.2489 25 6 4.5306 1.4994 -1.2632 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8514 1.6879 2.0986 32 1 4.9891 0.5232 1.3731 33 1 6.2407 2.4772 2.1412 34 1 5.1560 3.5634 1.2389 35 1 6.9290 1.4081 0.0020 36 1 10.5384 3.6279 4.0535 37 1 10.4793 4.0483 1.4498 38 1 9.8131 4.7652 -0.0369 39 1 6.2424 2.4759 -2.1385 40 1 5.1570 3.5626 -1.2377 41 1 4.9897 0.5161 -1.3659 42 1 3.8517 1.6746 -2.0979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318103901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:09 Heat of formation + Delta-G solvation = -69.391346 kcal Electronic energy + Delta-G solvation = -27213.874341 eV Core-core repulsion = 23321.789959 eV Total energy + Delta-G solvation = -3892.084382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -39.52186 -37.58093 -37.20528 -35.97035 -35.60297 -34.50489 -33.41294 -32.33958 -31.65071 -30.83353 -27.78959 -25.41741 -24.45054 -23.89250 -23.06420 -20.68234 -19.34512 -18.75813 -18.14810 -17.37301 -16.60246 -16.41589 -16.23614 -16.07619 -14.98485 -14.55151 -14.51611 -14.24067 -14.16500 -14.05397 -13.67038 -13.36809 -13.21926 -12.88053 -12.77612 -12.58168 -12.24261 -12.19315 -12.12759 -11.88203 -11.87069 -11.73803 -11.48545 -11.34533 -11.24855 -11.12999 -10.95280 -10.78600 -10.59952 -10.46600 -10.30950 -10.17907 -10.08277 -9.38542 -9.02688 -8.52267 -8.15898 -6.54829 -4.15405 0.13891 2.57595 2.98801 3.10018 3.13857 3.55310 3.77312 3.79886 3.98701 4.02297 4.21264 4.30811 4.53277 4.68276 4.79099 4.82825 4.87986 5.17159 5.25560 5.34691 5.37674 5.39088 5.50400 5.55006 5.59037 5.60012 5.71525 5.88717 5.92373 6.14868 6.23222 6.25412 6.51720 6.54683 6.58635 6.78696 6.85894 6.87541 7.20382 7.45156 8.14241 8.84847 8.90610 9.23051 9.63478 10.44870 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.003867 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.517608 B = 7238.717514 C = 8060.837342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.636 4.636 3 S 2.605 3.395 4 O -0.955 6.955 5 O -0.953 6.953 6 N -0.998 5.998 7 C 0.120 3.880 8 C -0.124 4.124 9 C -0.083 4.083 10 C 0.468 3.532 11 O -0.596 6.596 12 N -0.444 5.444 13 C -0.330 4.330 14 H 0.108 0.892 15 C 0.034 3.966 16 N -0.876 5.876 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.281 1.281 21 C 0.220 3.780 22 C 0.258 3.742 23 N -0.490 5.490 24 C -0.109 4.109 25 C 0.119 3.881 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.274 0.726 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 -13.205 -5.582 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.764 4.764 3 S 2.698 3.302 4 O -0.945 6.945 5 O -0.943 6.943 6 N -0.837 5.837 7 C -0.005 4.005 8 C -0.164 4.164 9 C -0.104 4.104 10 C 0.257 3.743 11 O -0.481 6.481 12 N -0.163 5.163 13 C -0.457 4.457 14 H 0.126 0.874 15 C -0.170 4.170 16 N -0.515 5.515 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.207 1.207 21 C 0.094 3.906 22 C -0.060 4.060 23 N -0.170 5.170 24 C -0.149 4.149 25 C -0.006 4.006 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.163 0.837 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.241 -10.627 -4.939 16.239 hybrid contribution 0.621 -1.896 0.644 2.096 sum -10.621 -12.523 -4.295 16.972 Atomic orbital electron populations 1.21499 0.90804 1.04839 1.03419 1.30607 1.06934 1.27393 1.11486 1.05183 0.73262 0.77371 0.74337 1.93582 1.83387 1.72283 1.45260 1.93595 1.83331 1.72237 1.45175 1.57691 1.23678 1.89632 1.12689 1.21469 0.94947 0.99927 0.84127 1.21777 0.96355 0.98805 0.99416 1.20923 0.94412 0.99508 0.95579 1.20237 0.83078 0.87368 0.83640 1.90567 1.77346 1.38963 1.41200 1.43651 1.22486 1.20877 1.29277 1.19791 1.27639 0.95820 1.02445 0.87410 1.25282 0.96861 0.97851 0.97008 1.69869 1.32026 1.23321 1.26329 0.85837 0.78533 0.80724 0.79455 1.19220 1.20440 1.20737 1.18903 0.93998 0.81823 0.95877 1.29382 0.92208 0.92694 0.91668 1.80811 1.09599 1.14264 1.12314 1.21649 0.96107 0.99174 0.97948 1.21543 0.95012 0.99675 0.84390 0.91000 0.91038 0.90204 0.85183 0.85109 0.89015 0.91166 0.87850 0.91766 0.89255 0.91492 0.83687 0.90138 0.90427 0.90866 0.91441 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.64 -4.73 6.90 37.16 0.26 -4.47 16 3 S 2.61 31.19 5.45 -107.50 -0.59 30.61 16 4 O -0.95 -14.13 16.59 -57.54 -0.95 -15.08 16 5 O -0.95 -14.58 16.58 -57.54 -0.95 -15.54 16 6 N -1.00 -12.18 3.23 -113.76 -0.37 -12.55 16 7 C 0.12 1.53 6.40 -3.93 -0.03 1.51 16 8 C -0.12 -2.07 5.07 -26.83 -0.14 -2.21 16 9 C -0.08 -1.42 1.65 -91.73 -0.15 -1.57 16 10 C 0.47 10.07 6.87 -10.99 -0.08 9.99 16 11 O -0.60 -14.40 15.66 5.55 0.09 -14.32 16 12 N -0.44 -9.78 2.61 -117.94 -0.31 -10.09 16 13 C -0.33 -7.04 7.71 -14.93 -0.12 -7.16 16 14 H 0.11 2.10 5.77 -52.49 -0.30 1.80 16 15 C 0.03 0.74 5.17 -17.46 -0.09 0.65 16 16 N -0.88 -20.54 8.92 55.50 0.50 -20.05 16 17 Si 0.93 17.30 29.57 -169.99 -5.03 12.27 16 18 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 C 0.22 4.81 5.09 -6.83 -0.03 4.78 16 22 C 0.26 6.28 14.03 -20.81 -0.29 5.99 16 23 N -0.49 -12.65 18.53 42.10 0.78 -11.87 16 24 C -0.11 -1.68 4.67 -26.61 -0.12 -1.81 16 25 C 0.12 1.39 6.43 -3.71 -0.02 1.37 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.09 1.14 6.85 -51.93 -0.36 0.78 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.86 6.13 -51.93 -0.32 1.54 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 36 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 37 H 0.15 3.15 5.78 -51.93 -0.30 2.85 16 38 H 0.08 1.63 7.57 -51.93 -0.39 1.24 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.99 6.86 -51.93 -0.36 0.63 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -32.03 354.12 -7.70 -39.73 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.76 Total: 5.15 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.44 Total: 6.40 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.60 Total: -54.55 kcal Atomic # 8 Polarization: -43.11 SS G_CDS: -1.82 Total: -44.94 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Atomic # 16 Polarization: 31.19 SS G_CDS: -0.59 Total: 30.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.03 -7.70 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.660 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds