Wall clock time and date at job start Tue Mar 31 2020 04:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47459 * 2 1 4 4 O 1.42098 * 110.54017 * 291.62450 * 3 2 1 5 5 O 1.42104 * 110.54088 * 68.37177 * 3 2 1 6 6 N 1.65595 * 104.45072 * 179.97438 * 3 2 1 7 7 C 1.46926 * 120.63134 * 269.72046 * 6 3 2 8 8 C 1.52757 * 109.00919 * 233.58400 * 7 6 3 9 9 C 1.53046 * 109.38399 * 305.58499 * 8 7 6 10 10 C 1.50701 * 109.44895 * 181.25183 * 9 8 7 11 11 O 1.21291 * 120.00111 * 247.76532 * 10 9 8 12 12 N 1.34775 * 119.99980 * 67.76686 * 10 9 8 13 13 C 1.37096 * 119.99651 * 3.68254 * 12 10 9 14 14 H 1.08000 * 120.00657 * 14.07884 * 13 12 10 15 15 C 1.38952 * 119.99719 * 194.07965 * 13 12 10 16 16 N 1.31417 * 119.99978 * 11.48135 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 191.47859 * 15 13 12 18 18 H 1.48494 * 109.47062 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46811 * 120.00113 * 17 15 13 20 20 H 1.48495 * 109.47132 * 239.99947 * 17 15 13 21 21 C 1.46498 * 120.00117 * 183.67601 * 12 10 9 22 22 C 1.47203 * 109.46861 * 83.74534 * 21 12 10 23 23 N 9.91224 * 136.11012 * 20.02890 * 2 1 3 24 24 C 1.53039 * 109.53384 * 61.24086 * 9 8 7 25 25 C 1.46926 * 120.63231 * 89.99836 * 6 3 2 26 26 H 1.08993 * 109.47231 * 300.00077 * 1 2 3 27 27 H 1.09007 * 109.46949 * 60.00013 * 1 2 3 28 28 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47325 * 239.99831 * 2 1 3 30 30 H 1.09005 * 109.46518 * 120.00282 * 2 1 3 31 31 H 1.09000 * 109.58676 * 353.42068 * 7 6 3 32 32 H 1.09006 * 109.58645 * 113.84110 * 7 6 3 33 33 H 1.09004 * 109.56279 * 185.55656 * 8 7 6 34 34 H 1.09000 * 109.36189 * 65.50040 * 8 7 6 35 35 H 1.08995 * 109.46221 * 301.22323 * 9 8 7 36 36 H 0.97002 * 119.99641 * 179.97438 * 16 15 13 37 37 H 1.08993 * 109.47086 * 203.74109 * 21 12 10 38 38 H 1.08996 * 109.47421 * 323.74705 * 21 12 10 39 39 H 1.09002 * 109.49956 * 178.68121 * 24 9 8 40 40 H 1.09003 * 109.49950 * 58.58508 * 24 9 8 41 41 H 1.09000 * 109.59273 * 246.16202 * 25 6 3 42 42 H 1.09005 * 109.58213 * 6.43931 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8387 2.3438 -1.2370 5 8 1.8386 2.3438 1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.5301 1.5060 1.2653 8 6 5.6193 2.5769 1.2512 9 6 6.4857 2.4038 0.0015 10 6 7.5795 3.4404 0.0018 11 8 7.5774 4.3246 -0.8285 12 7 8.5602 3.3850 0.9246 13 6 8.6052 2.3438 1.8153 14 1 8.0074 1.4607 1.6445 15 6 9.4198 2.4248 2.9381 16 7 9.9699 3.5713 3.2695 17 14 9.7330 0.9039 3.9764 18 1 9.0042 -0.2516 3.3943 19 1 11.1887 0.6104 3.9980 20 1 9.2558 1.1436 5.3620 21 6 9.5783 4.4372 0.9757 22 6 9.0671 5.5770 1.7544 23 7 8.6735 6.4563 2.3536 24 6 5.6204 2.5760 -1.2489 25 6 4.5306 1.4994 -1.2632 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 3.8514 1.6879 2.0986 32 1 4.9891 0.5232 1.3731 33 1 6.2407 2.4772 2.1412 34 1 5.1560 3.5634 1.2389 35 1 6.9290 1.4081 0.0020 36 1 10.5384 3.6279 4.0535 37 1 10.4793 4.0483 1.4498 38 1 9.8131 4.7652 -0.0369 39 1 6.2424 2.4759 -2.1385 40 1 5.1570 3.5626 -1.2377 41 1 4.9897 0.5161 -1.3659 42 1 3.8517 1.6746 -2.0979 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318103901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:08 Heat of formation + Delta-G solvation = -91.923777 kcal Electronic energy + Delta-G solvation = -27214.851421 eV Core-core repulsion = 23321.789959 eV Total energy + Delta-G solvation = -3893.061461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07547 -38.87175 -38.22233 -37.43405 -36.97871 -36.38962 -33.98341 -33.66735 -33.28366 -31.95533 -29.49142 -26.94140 -25.62610 -24.71077 -24.20943 -21.95941 -20.88479 -19.86974 -19.46617 -18.69279 -18.08994 -17.81211 -17.38264 -17.15632 -16.26818 -16.04477 -15.76094 -15.59408 -15.26630 -15.05490 -14.97887 -14.68467 -14.33255 -14.27379 -14.00010 -13.61048 -13.57888 -13.39427 -13.36293 -13.23443 -13.17486 -13.02142 -12.92076 -12.82310 -12.51789 -12.36785 -12.23311 -12.11953 -11.99679 -11.84739 -11.61824 -11.43768 -11.31780 -11.09392 -10.36246 -9.93035 -9.82295 -8.23121 -5.88446 -0.72309 1.49017 1.60226 1.67801 1.71507 1.80975 2.06285 2.25149 2.41021 2.95418 3.10193 3.15136 3.16672 3.63233 3.67214 3.82046 3.92984 4.04311 4.11419 4.23337 4.28621 4.41953 4.52169 4.53789 4.70041 4.72808 4.85970 4.88836 4.89448 4.94044 5.00430 5.05480 5.12083 5.13319 5.32510 5.36877 5.48876 5.56125 5.72694 5.74987 6.43366 6.94270 7.15121 7.52804 7.92822 8.76923 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.003867 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.517608 B = 7238.717514 C = 8060.837342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.597 4.597 3 S 2.594 3.406 4 O -0.995 6.995 5 O -1.000 7.000 6 N -1.003 6.003 7 C 0.125 3.875 8 C -0.122 4.122 9 C -0.076 4.076 10 C 0.454 3.546 11 O -0.631 6.631 12 N -0.452 5.452 13 C -0.332 4.332 14 H 0.132 0.868 15 C -0.008 4.008 16 N -0.910 5.910 17 Si 0.992 3.008 18 H -0.242 1.242 19 H -0.284 1.284 20 H -0.297 1.297 21 C 0.220 3.780 22 C 0.267 3.733 23 N -0.525 5.525 24 C -0.109 4.109 25 C 0.123 3.877 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.024 0.976 35 H 0.120 0.880 36 H 0.270 0.730 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.032 0.968 41 H 0.112 0.888 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 -17.900 -5.977 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.731 4.731 3 S 2.693 3.307 4 O -0.986 6.986 5 O -0.990 6.990 6 N -0.841 5.841 7 C 0.001 3.999 8 C -0.162 4.162 9 C -0.097 4.097 10 C 0.245 3.755 11 O -0.518 6.518 12 N -0.171 5.171 13 C -0.459 4.459 14 H 0.150 0.850 15 C -0.208 4.208 16 N -0.550 5.550 17 Si 0.817 3.183 18 H -0.165 1.165 19 H -0.210 1.210 20 H -0.224 1.224 21 C 0.093 3.907 22 C -0.050 4.050 23 N -0.206 5.206 24 C -0.149 4.149 25 C -0.002 4.002 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.179 0.821 30 H 0.176 0.824 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.138 0.862 36 H 0.080 0.920 37 H 0.167 0.833 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.130 0.870 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.187 -15.286 -5.351 20.269 hybrid contribution 0.871 -0.395 0.739 1.209 sum -11.316 -15.681 -4.613 19.881 Atomic orbital electron populations 1.21714 0.90425 1.06573 1.03423 1.30280 1.06968 1.21359 1.14471 1.05310 0.73093 0.79567 0.72684 1.93527 1.83736 1.74979 1.46322 1.93534 1.83789 1.75092 1.46591 1.57582 1.23762 1.90189 1.12532 1.21469 0.93780 1.00124 0.84562 1.21726 0.97353 0.98539 0.98579 1.20974 0.93108 0.99180 0.96451 1.21167 0.83551 0.88006 0.82810 1.90537 1.78108 1.40635 1.42513 1.43922 1.22631 1.20953 1.29550 1.20277 1.27440 0.96061 1.02091 0.85046 1.26079 0.96599 1.00065 0.98042 1.69986 1.32979 1.25257 1.26788 0.84846 0.78063 0.78437 0.76935 1.16481 1.20961 1.22444 1.19049 0.94190 0.81357 0.96070 1.29973 0.91348 0.92608 0.91095 1.80788 1.10806 1.15413 1.13589 1.21642 0.97078 0.98815 0.97333 1.21630 0.93959 1.00121 0.84453 0.91359 0.91114 0.87394 0.82062 0.82376 0.88971 0.86957 0.89269 0.95733 0.86250 0.92011 0.83324 0.88918 0.90048 0.94860 0.87002 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.92 71.98 0.71 -0.96 16 2 C -0.60 -6.01 6.90 71.98 0.50 -5.52 16 3 S 2.59 58.06 5.45 -56.49 -0.31 57.76 16 4 O -1.00 -29.09 16.59 -127.65 -2.12 -31.21 16 5 O -1.00 -30.57 16.58 -127.65 -2.12 -32.68 16 6 N -1.00 -22.02 3.23 -513.84 -1.66 -23.67 16 7 C 0.13 2.88 6.40 86.22 0.55 3.43 16 8 C -0.12 -4.04 5.07 30.53 0.15 -3.88 16 9 C -0.08 -2.51 1.65 -11.51 -0.02 -2.53 16 10 C 0.45 19.69 6.87 87.66 0.60 20.29 16 11 O -0.63 -31.40 15.66 -3.06 -0.05 -31.45 16 12 N -0.45 -19.92 2.61 -645.43 -1.68 -21.60 16 13 C -0.33 -13.73 7.71 84.04 0.65 -13.09 16 14 H 0.13 4.69 5.77 -2.91 -0.02 4.68 16 15 C -0.01 -0.33 5.17 84.93 0.44 0.11 16 16 N -0.91 -42.98 8.92 21.66 0.19 -42.79 16 17 Si 0.99 34.07 29.57 68.60 2.03 36.09 16 18 H -0.24 -7.25 7.11 99.48 0.71 -6.54 16 19 H -0.28 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.30 -10.96 7.11 99.48 0.71 -10.25 16 21 C 0.22 9.78 5.09 84.57 0.43 10.21 16 22 C 0.27 13.38 14.03 89.46 1.26 14.64 16 23 N -0.52 -28.08 18.53 19.99 0.37 -27.71 16 24 C -0.11 -3.29 4.67 30.67 0.14 -3.15 16 25 C 0.12 2.52 6.43 86.36 0.56 3.07 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 2.13 6.85 -2.39 -0.02 2.11 16 32 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.09 3.16 6.13 -2.39 -0.01 3.15 16 34 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 3.23 7.15 -2.39 -0.02 3.21 16 36 H 0.27 12.50 8.31 -92.71 -0.77 11.73 16 37 H 0.15 6.55 5.78 -2.39 -0.01 6.54 16 38 H 0.09 3.85 7.57 -2.39 -0.02 3.83 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.90 6.86 -2.38 -0.02 1.89 16 Total: -1.00 -73.92 354.12 1.68 -72.24 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 1.04 Total: 22.40 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 5.97 Total: 22.62 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -2.78 Total: -115.77 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -4.28 Total: -95.35 kcal Atomic # 14 Polarization: 34.07 SS G_CDS: 2.03 Total: 36.09 kcal Atomic # 16 Polarization: 58.06 SS G_CDS: -0.31 Total: 57.76 kcal Total: -73.92 1.68 -72.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318103901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.679 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds