Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34155 * 125.16480 * 2 1 4 4 C 1.37966 * 107.89087 * 180.02562 * 3 2 1 5 5 C 1.47286 * 126.81097 * 179.97438 * 4 3 2 6 6 O 1.21613 * 120.00055 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99694 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99665 * 179.72406 * 7 5 4 9 9 C 1.50703 * 109.47138 * 180.28062 * 8 7 5 10 10 O 1.21293 * 120.00086 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00069 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00084 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00027 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99944 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99793 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00192 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47136 * 89.99746 * 16 14 12 18 18 H 1.48501 * 109.46721 * 209.99776 * 16 14 12 19 19 H 1.48504 * 109.46915 * 329.99667 * 16 14 12 20 20 C 1.46601 * 106.38065 * 0.22364 * 4 3 2 21 21 C 1.48296 * 126.51333 * 179.73374 * 20 4 3 22 22 C 1.39800 * 120.53755 * 144.99527 * 21 20 4 23 23 C 1.38413 * 118.30664 * 180.02562 * 22 21 20 24 24 C 1.38315 * 119.28498 * 0.02562 * 23 22 21 25 25 N 1.31898 * 121.03858 * 0.02562 * 24 23 22 26 26 C 1.31730 * 121.85697 * 359.65090 * 25 24 23 27 27 N 1.31361 * 106.97396 * 359.61562 * 20 4 3 28 28 H 1.08997 * 109.47433 * 90.00246 * 1 2 3 29 29 H 1.09001 * 109.47397 * 210.00270 * 1 2 3 30 30 H 1.09001 * 109.47378 * 330.00399 * 1 2 3 31 31 H 1.08005 * 126.05346 * 0.04804 * 3 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 7 5 4 33 33 H 1.09009 * 109.47454 * 300.27637 * 8 7 5 34 34 H 1.08998 * 109.47492 * 60.27932 * 8 7 5 35 35 H 0.97002 * 120.00050 * 359.97438 * 11 9 8 36 36 H 0.96997 * 120.00181 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.85038 * 359.97438 * 22 21 20 38 38 H 1.07997 * 120.35736 * 180.02562 * 23 22 21 39 39 H 1.08004 * 119.48315 * 179.97438 * 24 23 22 40 40 H 1.08004 * 119.70748 * 180.31436 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2376 1.0967 0.0000 4 6 3.5550 0.6870 -0.0006 5 6 4.7478 1.5510 -0.0013 6 8 5.8581 1.0547 -0.0023 7 7 4.6089 2.8916 -0.0010 8 6 5.7954 3.7509 0.0044 9 6 5.3687 5.1963 0.0106 10 8 4.1896 5.4806 0.0101 11 7 6.2974 6.1730 0.0157 12 6 5.9093 7.4879 0.0209 13 1 4.8594 7.7410 0.0204 14 6 6.8668 8.4949 0.0267 15 7 6.4948 9.7553 0.0311 16 14 8.6828 8.0570 0.0267 17 1 9.1656 7.9475 -1.3733 18 1 9.4473 9.1166 0.7326 19 1 8.8790 6.7591 0.7211 20 6 3.5321 -0.7788 -0.0064 21 6 4.7101 -1.6796 -0.0146 22 6 4.6779 -2.8973 0.6713 23 6 5.8034 -3.7021 0.6332 24 6 6.9137 -3.2794 -0.0751 25 7 6.9149 -2.1243 -0.7119 26 6 5.8656 -1.3279 -0.7095 27 7 2.2700 -1.1427 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.8898 2.1192 0.0007 32 1 3.7233 3.2875 0.0002 33 1 6.3900 3.5438 0.8942 34 1 6.3921 3.5521 -0.8858 35 1 7.2404 5.9457 0.0158 36 1 7.1631 10.4582 0.0348 37 1 3.7976 -3.2021 1.2177 38 1 5.8146 -4.6498 1.1510 39 1 7.7938 -3.9046 -0.1066 40 1 5.9029 -0.3919 -1.2471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341881513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = 52.965692 kcal Electronic energy + Delta-G solvation = -26526.906104 eV Core-core repulsion = 22536.976321 eV Total energy + Delta-G solvation = -3989.929783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47865 -39.88689 -39.33552 -38.17528 -34.63152 -34.21027 -33.76740 -32.34951 -31.83382 -31.23849 -30.75320 -28.01245 -26.87401 -24.61443 -23.78516 -23.61410 -22.36205 -20.39145 -20.00913 -19.63058 -18.79764 -17.89547 -17.10860 -16.49596 -16.26769 -15.87942 -15.75046 -15.42475 -15.26742 -15.21106 -14.76100 -14.15543 -14.03548 -14.01126 -13.72278 -13.28499 -13.19035 -13.15124 -12.95319 -12.82747 -12.47102 -12.19275 -12.14854 -11.86112 -11.24410 -11.19608 -10.64990 -10.40979 -10.08306 -9.93786 -9.71540 -9.67202 -9.50420 -9.12476 -8.84301 -8.79935 -8.52355 -8.32345 -6.42704 -3.95379 0.70159 1.24271 1.29717 1.99632 2.12989 2.99328 3.04175 3.12151 3.29119 3.41049 3.55795 3.81538 3.94648 4.02564 4.22847 4.47164 4.52954 4.63406 4.74315 4.74817 4.86211 4.93222 5.00974 5.04603 5.12585 5.21369 5.26699 5.40279 5.67320 5.77642 5.80232 5.82256 5.89498 6.11075 6.15004 6.46823 6.55270 6.67644 7.22963 7.42337 7.74282 7.97578 7.98337 8.36746 8.45081 8.79528 9.27920 9.61055 10.69359 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.002806 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.237037 B = 9977.456461 C =11833.805629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.363 5.363 3 C 0.111 3.889 4 C -0.277 4.277 5 C 0.591 3.409 6 O -0.543 6.543 7 N -0.704 5.704 8 C 0.108 3.892 9 C 0.438 3.562 10 O -0.582 6.582 11 N -0.575 5.575 12 C -0.310 4.310 13 H 0.121 0.879 14 C 0.045 3.955 15 N -0.874 5.874 16 Si 0.879 3.121 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.266 1.266 20 C 0.172 3.828 21 C -0.079 4.079 22 C -0.046 4.046 23 C -0.189 4.189 24 C 0.106 3.894 25 N -0.488 5.488 26 C 0.168 3.832 27 N -0.285 5.285 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.191 0.809 32 H 0.408 0.592 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.276 0.724 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.154 0.846 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 -23.918 0.660 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.142 5.142 3 C -0.039 4.039 4 C -0.292 4.292 5 C 0.379 3.621 6 O -0.423 6.423 7 N -0.357 5.357 8 C -0.020 4.020 9 C 0.224 3.776 10 O -0.467 6.467 11 N -0.213 5.213 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.513 5.513 16 Si 0.705 3.295 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.192 1.192 20 C 0.003 3.997 21 C -0.084 4.084 22 C -0.073 4.073 23 C -0.209 4.209 24 C -0.051 4.051 25 N -0.196 5.196 26 C 0.010 3.990 27 N -0.105 5.105 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.208 0.792 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.208 0.792 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.578 -24.490 0.210 25.637 hybrid contribution 0.602 0.653 0.649 1.100 sum -6.976 -23.837 0.859 24.852 Atomic orbital electron populations 1.22040 0.73294 1.05131 1.04071 1.48127 1.07240 1.03250 1.55593 1.23134 0.90476 0.93803 0.96438 1.21216 0.92636 0.92603 1.22789 1.17078 0.87640 0.81266 0.76134 1.90737 1.26133 1.73905 1.51515 1.45498 1.10714 1.04938 1.74550 1.20979 0.88121 0.89276 1.03582 1.19640 0.86776 0.86161 0.85011 1.90520 1.17117 1.83089 1.55930 1.42127 1.07176 1.06725 1.65246 1.19432 0.97044 0.78688 1.48729 0.86098 1.25072 0.98783 0.94961 0.97068 1.69617 1.34744 0.98848 1.48089 0.86673 0.84759 0.78899 0.79202 1.19336 1.19990 1.19153 1.21523 0.90760 0.90615 0.96775 1.18699 0.92872 0.94189 1.02591 1.21593 0.98280 0.92038 0.95437 1.21994 0.94587 1.01565 1.02744 1.22924 0.97502 0.92793 0.91843 1.67855 1.28097 1.04314 1.19354 1.23481 0.85778 0.96997 0.92790 1.77328 1.01136 1.06905 1.25139 0.90090 0.88899 0.88708 0.79172 0.75411 0.89565 0.89435 0.79178 0.91366 0.84829 0.84725 0.82841 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.39 59.84 0.68 1.15 16 2 N -0.36 -3.50 3.95 -67.65 -0.27 -3.77 16 3 C 0.11 1.12 10.94 -16.64 -0.18 0.93 16 4 C -0.28 -3.66 6.27 -102.95 -0.65 -4.31 16 5 C 0.59 8.96 7.68 -12.58 -0.10 8.87 16 6 O -0.54 -9.40 12.49 5.27 0.07 -9.33 16 7 N -0.70 -10.70 5.52 -62.61 -0.35 -11.05 16 8 C 0.11 1.80 6.15 -5.19 -0.03 1.77 16 9 C 0.44 9.30 7.85 -10.98 -0.09 9.22 16 10 O -0.58 -14.07 15.24 5.55 0.08 -13.99 16 11 N -0.58 -13.09 5.09 -10.96 -0.06 -13.15 16 12 C -0.31 -8.41 10.16 -14.93 -0.15 -8.56 16 13 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 14 C 0.05 1.20 5.50 -17.46 -0.10 1.11 16 15 N -0.87 -24.69 13.96 55.50 0.77 -23.91 16 16 Si 0.88 18.83 27.74 -169.99 -4.71 14.12 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 20 C 0.17 2.32 6.96 -80.56 -0.56 1.76 16 21 C -0.08 -1.07 5.74 -104.76 -0.60 -1.67 16 22 C -0.05 -0.51 9.92 -38.93 -0.39 -0.90 16 23 C -0.19 -1.80 10.10 -39.49 -0.40 -2.20 16 24 C 0.11 1.15 11.17 -17.49 -0.20 0.96 16 25 N -0.49 -6.90 10.35 -12.96 -0.13 -7.03 16 26 C 0.17 2.45 8.96 -17.18 -0.15 2.30 16 27 N -0.29 -3.51 12.48 34.58 0.43 -3.08 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.25 8.13 -51.93 -0.42 -0.17 16 31 H 0.19 1.34 7.48 -52.48 -0.39 0.95 16 32 H 0.41 5.91 6.39 -40.82 -0.26 5.65 16 33 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 36 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.18 2.73 5.69 -52.48 -0.30 2.44 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -35.09 352.24 -5.88 -40.97 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -4.12 Total: 14.48 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: -2.90 Total: 10.42 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.40 Total: -61.99 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.15 Total: -23.32 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.12 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.09 -5.88 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341881513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.939 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds