Wall clock time and date at job start Tue Mar 31 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 110.54284 * 2 1 4 4 O 1.42096 * 110.53911 * 223.25087 * 2 1 3 5 5 N 1.65598 * 104.45015 * 111.62477 * 2 1 3 6 6 C 1.46929 * 120.63020 * 269.72324 * 5 2 1 7 7 C 1.53197 * 108.77220 * 233.88023 * 6 5 2 8 8 C 1.53042 * 109.31102 * 305.36642 * 7 6 5 9 9 C 1.53008 * 109.44573 * 181.38106 * 8 7 6 10 10 C 1.50695 * 109.47179 * 64.93570 * 9 8 7 11 11 O 1.21294 * 120.00438 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99701 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99837 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00252 * 17.71689 * 13 12 10 15 15 C 1.38955 * 120.00060 * 197.71720 * 13 12 10 16 16 N 1.31408 * 119.99918 * 21.39712 * 15 13 12 17 17 Si 1.86795 * 120.00161 * 201.39675 * 15 13 12 18 18 H 1.48510 * 109.47038 * 89.99871 * 17 15 13 19 19 H 1.48494 * 109.47435 * 210.00056 * 17 15 13 20 20 H 1.48505 * 109.47450 * 330.00319 * 17 15 13 21 21 C 1.46498 * 120.00148 * 359.97438 * 12 10 9 22 22 C 1.47198 * 109.46858 * 84.23765 * 21 12 10 23 23 N 8.40737 * 149.87339 * 95.55040 * 2 1 3 24 24 C 1.53038 * 109.54201 * 61.36576 * 8 7 6 25 25 C 1.46929 * 120.63201 * 89.99866 * 5 2 1 26 26 H 1.09004 * 109.47228 * 308.37391 * 1 2 3 27 27 H 1.09002 * 109.47342 * 68.37295 * 1 2 3 28 28 H 1.09000 * 109.47188 * 188.37801 * 1 2 3 29 29 H 1.08993 * 109.58682 * 353.66286 * 6 5 2 30 30 H 1.08996 * 109.58910 * 114.09627 * 6 5 2 31 31 H 1.08998 * 109.49595 * 185.41338 * 7 6 5 32 32 H 1.09003 * 109.49582 * 65.31750 * 7 6 5 33 33 H 1.08997 * 109.46083 * 301.34123 * 8 7 6 34 34 H 1.08992 * 109.46876 * 184.93946 * 9 8 7 35 35 H 1.09002 * 109.46557 * 304.93213 * 9 8 7 36 36 H 0.97001 * 119.99939 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.46924 * 204.23398 * 21 12 10 38 38 H 1.08995 * 109.47245 * 324.23707 * 21 12 10 39 39 H 1.08996 * 109.49895 * 178.68372 * 24 8 7 40 40 H 1.08999 * 109.52149 * 58.59685 * 24 8 7 41 41 H 1.09003 * 109.58345 * 245.90945 * 25 5 2 42 42 H 1.09008 * 109.58388 * 6.18339 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4907 6 6 2.4200 0.3177 2.6291 7 6 3.8008 0.0574 3.2395 8 6 3.9270 -1.4267 3.5914 9 6 5.2921 -1.6838 4.2329 10 6 5.3750 -0.9521 5.5477 11 8 4.4351 -0.2897 5.9336 12 7 6.4942 -1.0330 6.2943 13 6 6.5695 -0.3678 7.4908 14 1 5.6677 -0.0227 7.9745 15 6 7.8062 -0.1376 8.0811 16 7 8.8977 -0.1600 7.3497 17 14 7.9171 0.2035 9.9143 18 1 8.0838 -1.0775 10.6470 19 1 9.0822 1.0836 10.1844 20 1 6.6732 0.8754 10.3690 21 6 7.6297 -1.8326 5.8280 22 6 8.4512 -1.0285 4.9087 23 7 9.0857 -0.4081 4.2000 24 6 3.7948 -2.2674 2.3194 25 6 2.4140 -2.0334 1.6988 26 1 -0.3634 0.6380 0.8057 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.3609 1.3506 2.2862 30 1 1.6492 0.1343 3.3776 31 1 3.9183 0.6567 4.1423 32 1 4.5735 0.3276 2.5197 33 1 3.1388 -1.7020 4.2922 34 1 5.4177 -2.7529 4.4034 35 1 6.0788 -1.3270 3.5681 36 1 9.7609 0.0011 7.7617 37 1 8.2339 -2.1383 6.6822 38 1 7.2620 -2.7170 5.3078 39 1 3.9081 -3.3227 2.5675 40 1 4.5676 -1.9758 1.6082 41 1 1.6426 -2.4085 2.3714 42 1 2.3484 -2.5520 0.7422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346436342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:56 Heat of formation + Delta-G solvation = -69.201945 kcal Electronic energy + Delta-G solvation = -26773.351891 eV Core-core repulsion = 22881.275722 eV Total energy + Delta-G solvation = -3892.076169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.40192 -38.06378 -37.30011 -36.06987 -35.80119 -34.41312 -33.36367 -31.85051 -30.95776 -29.74896 -28.33138 -27.34933 -24.86000 -23.31800 -22.84150 -20.30299 -19.03138 -18.78317 -17.91488 -17.76872 -16.54239 -16.38646 -16.28668 -16.08036 -14.80463 -14.70903 -14.55486 -14.31519 -14.24839 -13.87521 -13.52848 -13.44320 -13.40318 -13.13598 -12.97402 -12.74336 -12.22980 -12.11423 -12.08320 -11.99053 -11.79898 -11.62972 -11.46597 -11.26573 -11.19455 -11.16742 -11.00910 -10.60536 -10.57101 -10.39693 -10.33796 -10.26222 -10.08295 -9.25206 -9.05325 -8.46758 -8.03874 -6.50522 -3.99865 0.07184 2.47754 3.09479 3.21829 3.25668 3.56354 3.72041 3.81122 3.93472 3.99508 4.11956 4.40078 4.65713 4.66560 4.69458 4.88058 5.01051 5.10129 5.24053 5.24740 5.26616 5.34949 5.43604 5.55254 5.70987 5.73210 5.80349 5.85202 6.00344 6.01801 6.10917 6.20873 6.26604 6.39766 6.46434 6.50594 6.74503 6.85248 7.46970 7.91495 8.28405 8.75288 9.01095 9.20757 9.75384 10.55586 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.002937 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.133705 B = 9530.463007 C = 9888.878960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.609 3.391 3 O -0.954 6.954 4 O -0.958 6.958 5 N -0.998 5.998 6 C 0.121 3.879 7 C -0.131 4.131 8 C -0.063 4.063 9 C -0.134 4.134 10 C 0.457 3.543 11 O -0.571 6.571 12 N -0.445 5.445 13 C -0.314 4.314 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.877 5.877 17 Si 0.926 3.074 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.222 3.778 22 C 0.245 3.755 23 N -0.472 5.472 24 C -0.128 4.128 25 C 0.121 3.879 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.273 0.727 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.520 -7.186 -9.546 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.702 3.298 3 O -0.944 6.944 4 O -0.949 6.949 5 N -0.837 5.837 6 C -0.004 4.004 7 C -0.170 4.170 8 C -0.082 4.082 9 C -0.175 4.175 10 C 0.246 3.754 11 O -0.454 6.454 12 N -0.165 5.165 13 C -0.441 4.441 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.516 5.516 17 Si 0.753 3.247 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.094 3.906 22 C -0.073 4.073 23 N -0.152 5.152 24 C -0.167 4.167 25 C -0.004 4.004 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.285 -5.625 -11.024 18.156 hybrid contribution -0.425 -0.097 1.527 1.588 sum -13.710 -5.722 -9.497 17.632 Atomic orbital electron populations 1.30614 1.29342 1.11377 1.11108 1.04888 0.77562 0.74113 0.73263 1.93613 1.77311 1.37844 1.85672 1.93589 1.77456 1.61711 1.62111 1.57696 1.83906 1.14696 1.27448 1.21533 0.98774 0.92778 0.87287 1.22038 0.95497 0.97324 1.02112 1.20765 0.96968 0.95158 0.95318 1.21701 0.98670 1.00920 0.96169 1.20157 0.84497 0.85045 0.85671 1.90487 1.37824 1.44654 1.72442 1.43672 1.10909 1.43075 1.18888 1.19716 0.94453 1.35058 0.94900 0.87395 1.25268 0.94967 0.96579 1.00408 1.69863 0.99073 1.47443 1.35231 0.85915 0.78056 0.78312 0.82412 1.20205 1.21177 1.19379 1.18718 0.87212 0.89472 0.95199 1.29305 0.93219 0.93642 0.91150 1.80891 1.10432 1.08811 1.15108 1.21950 0.96760 1.00254 0.97779 1.21441 0.98043 0.79306 1.01645 0.85427 0.85809 0.85554 0.89226 0.91271 0.87961 0.92318 0.90242 0.90029 0.90408 0.91663 0.85641 0.89887 0.90731 0.91376 0.91455 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.94 10.99 101.05 1.11 -2.83 16 2 S 2.61 26.57 6.10 -107.50 -0.66 25.92 16 3 O -0.95 -13.34 16.58 -57.54 -0.95 -14.29 16 4 O -0.96 -12.45 16.59 -57.54 -0.95 -13.41 16 5 N -1.00 -10.51 3.22 -113.52 -0.37 -10.87 16 6 C 0.12 1.45 6.43 -3.71 -0.02 1.42 16 7 C -0.13 -2.00 5.11 -26.61 -0.14 -2.14 16 8 C -0.06 -0.88 1.80 -90.57 -0.16 -1.05 16 9 C -0.13 -2.12 3.78 -27.88 -0.11 -2.23 16 10 C 0.46 9.61 7.27 -10.99 -0.08 9.53 16 11 O -0.57 -13.54 13.61 5.55 0.08 -13.46 16 12 N -0.45 -9.95 2.60 -117.94 -0.31 -10.26 16 13 C -0.31 -7.86 9.32 -14.93 -0.14 -8.00 16 14 H 0.11 2.85 7.39 -52.49 -0.39 2.46 16 15 C 0.03 0.76 4.87 -17.47 -0.08 0.68 16 16 N -0.88 -21.89 9.48 55.50 0.53 -21.37 16 17 Si 0.93 19.36 29.60 -169.99 -5.03 14.33 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 C 0.22 4.25 4.91 -6.83 -0.03 4.22 16 22 C 0.25 5.34 12.95 -20.77 -0.27 5.07 16 23 N -0.47 -11.21 18.53 42.14 0.78 -10.43 16 24 C -0.13 -1.42 5.36 -26.62 -0.14 -1.57 16 25 C 0.12 1.14 6.43 -3.71 -0.02 1.12 16 26 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.12 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.09 1.06 6.85 -51.93 -0.36 0.70 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.88 5.92 -51.93 -0.31 1.57 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.14 7.96 -51.93 -0.41 0.73 16 34 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 35 H 0.08 1.28 7.51 -51.93 -0.39 0.89 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 37 H 0.13 2.48 6.46 -51.93 -0.34 2.15 16 38 H 0.08 1.19 6.68 -51.93 -0.35 0.85 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.77 6.86 -51.92 -0.36 0.41 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -34.24 353.36 -7.45 -41.69 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.80 Total: 2.60 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -0.09 Total: 4.23 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.64 Total: -52.92 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.83 Total: -41.16 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Atomic # 16 Polarization: 26.57 SS G_CDS: -0.66 Total: 25.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.24 -7.45 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346436342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.514 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds