Wall clock time and date at job start Tue Mar 31 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30825 * 125.96115 * 2 1 4 4 C 1.33241 * 109.82879 * 180.12252 * 3 2 1 5 5 C 1.50702 * 125.52322 * 179.85595 * 4 3 2 6 6 H 1.08994 * 110.64318 * 358.02829 * 5 4 3 7 7 C 1.55162 * 110.72035 * 121.17401 * 5 4 3 8 8 C 1.54904 * 101.58083 * 153.86372 * 7 5 4 9 9 N 1.47424 * 104.83562 * 322.98584 * 8 7 5 10 10 S 1.65598 * 125.65123 * 204.09755 * 9 8 7 11 11 O 1.42100 * 106.39953 * 336.48045 * 10 9 8 12 12 O 1.42105 * 106.40088 * 203.56736 * 10 9 8 13 13 N 1.65593 * 107.21993 * 90.02648 * 10 9 8 14 14 C 1.46502 * 119.99605 * 269.99784 * 13 10 9 15 15 C 1.46499 * 120.00395 * 90.00069 * 13 10 9 16 16 C 1.50701 * 109.46992 * 264.99836 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.47023 * 108.70050 * 24.36053 * 9 8 7 25 25 N 1.30705 * 108.94512 * 359.59269 * 4 3 2 26 26 N 1.34426 * 125.95931 * 179.67269 * 2 1 3 27 27 H 0.97001 * 126.82676 * 0.06671 * 26 2 1 28 28 H 1.08995 * 109.47467 * 270.30533 * 1 2 3 29 29 H 1.08995 * 109.47463 * 30.30965 * 1 2 3 30 30 H 1.09007 * 109.46842 * 150.30507 * 1 2 3 31 31 H 1.08998 * 111.00270 * 35.78525 * 7 5 4 32 32 H 1.09003 * 111.00145 * 271.93494 * 7 5 4 33 33 H 1.09002 * 110.36516 * 204.15352 * 8 7 5 34 34 H 1.08999 * 110.46183 * 81.87724 * 8 7 5 35 35 H 1.09000 * 109.47587 * 270.00096 * 14 13 10 36 36 H 1.08997 * 109.47205 * 30.00247 * 14 13 10 37 37 H 1.09003 * 109.46728 * 150.00070 * 14 13 10 38 38 H 1.09002 * 109.47391 * 144.99826 * 15 13 10 39 39 H 1.09001 * 109.46813 * 24.99883 * 15 13 10 40 40 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.88321 * 118.13023 * 24 9 8 42 42 H 1.09002 * 109.88362 * 239.29711 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6887 -0.0027 5 6 4.7371 1.6236 -0.0066 6 1 4.4060 2.6615 -0.0421 7 6 5.6368 1.3765 1.2332 8 6 7.0146 1.8637 0.7197 9 7 7.0582 1.4500 -0.6947 10 16 8.4317 1.1907 -1.5826 11 8 9.4625 1.9412 -0.9554 12 8 8.0664 1.3599 -2.9454 13 7 8.8384 -0.4043 -1.4020 14 6 9.7270 -0.8147 -0.3120 15 6 8.3096 -1.4050 -2.3323 16 6 7.0679 -2.0275 -1.7478 17 1 6.7083 -1.7093 -0.7804 18 6 6.3902 -3.0026 -2.4486 19 7 5.3063 -3.5455 -1.9387 20 14 7.0118 -3.5525 -4.1221 21 1 7.9590 -4.6835 -3.9512 22 1 5.8644 -3.9898 -4.9571 23 1 7.7063 -2.4215 -4.7883 24 6 5.6801 1.3120 -1.1881 25 7 3.6194 -0.6168 0.0044 26 7 2.2964 -1.0881 0.0062 27 1 2.0093 -2.0146 0.0106 28 1 -0.3634 0.0055 1.0276 29 1 -0.3634 0.8871 -0.5186 30 1 -0.3633 -0.8928 -0.5091 31 1 5.6672 0.3173 1.4888 32 1 5.3034 1.9725 2.0828 33 1 7.8187 1.3859 1.2795 34 1 7.0896 2.9481 0.8003 35 1 10.7616 -0.7782 -0.6533 36 1 9.5996 -0.1398 0.5343 37 1 9.4810 -1.8316 -0.0061 38 1 9.0596 -2.1781 -2.4992 39 1 8.0643 -0.9260 -3.2802 40 1 4.8298 -4.2318 -2.4316 41 1 5.5049 2.0170 -2.0007 42 1 5.5112 0.2928 -1.5358 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363929735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:11 Heat of formation + Delta-G solvation = 20.835929 kcal Electronic energy + Delta-G solvation = -27711.949585 eV Core-core repulsion = 23856.070502 eV Total energy + Delta-G solvation = -3855.879082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85114 -38.14685 -36.68940 -35.56851 -35.25150 -33.15451 -32.36557 -32.06351 -30.41069 -28.92251 -28.32328 -27.51416 -25.12754 -23.24924 -22.08168 -21.67113 -20.70688 -19.45751 -18.41832 -17.70753 -17.40776 -16.87179 -16.61329 -15.75125 -15.40534 -15.22485 -14.35329 -14.28137 -13.85231 -13.59697 -13.37644 -13.06133 -13.05313 -12.96292 -12.82922 -12.51221 -12.37811 -12.27087 -11.81915 -11.61008 -11.54835 -11.43479 -11.29534 -11.25485 -11.22330 -11.03630 -10.67433 -10.57584 -10.50631 -10.14760 -9.71358 -9.65739 -9.49877 -9.09959 -8.57901 -8.54030 -8.04566 -6.07449 -4.06606 1.20301 1.94536 2.97015 3.10452 3.26200 3.33724 3.41158 3.46720 4.04513 4.17481 4.39900 4.62715 4.75251 4.91141 4.94909 5.16313 5.24756 5.29762 5.30513 5.45064 5.55480 5.61578 5.67768 5.78431 5.79197 6.01858 6.03188 6.15195 6.19161 6.37553 6.44282 6.45735 6.56895 6.65678 6.72070 6.81378 6.88549 7.16106 7.36463 7.44604 7.60047 8.42047 8.48018 9.00423 9.52878 11.03103 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010253 B = 0.006206 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.159125 B = 4510.823061 C = 6505.543857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.263 3.737 3 N -0.542 5.542 4 C 0.217 3.783 5 C 0.001 3.999 6 H 0.104 0.896 7 C -0.118 4.118 8 C 0.128 3.872 9 N -1.012 6.012 10 S 2.803 3.197 11 O -0.993 6.993 12 O -0.977 6.977 13 N -0.991 5.991 14 C 0.106 3.894 15 C 0.212 3.788 16 C -0.536 4.536 17 H 0.087 0.913 18 C 0.080 3.920 19 N -0.882 5.882 20 Si 0.860 3.140 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.129 3.871 25 N -0.250 5.250 26 N -0.473 5.473 27 H 0.441 0.559 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.045 0.955 40 H 0.259 0.741 41 H 0.067 0.933 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 6.803 7.209 11.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 N -0.272 5.272 4 C -0.066 4.066 5 C -0.021 4.021 6 H 0.123 0.877 7 C -0.158 4.158 8 C 0.002 3.998 9 N -0.851 5.851 10 S 2.813 3.187 11 O -0.977 6.977 12 O -0.961 6.961 13 N -0.832 5.832 14 C -0.040 4.040 15 C 0.089 3.911 16 C -0.575 4.575 17 H 0.105 0.895 18 C -0.123 4.123 19 N -0.519 5.519 20 Si 0.687 3.313 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.186 1.186 24 C 0.002 3.998 25 N -0.077 5.077 26 N -0.192 5.192 27 H 0.286 0.714 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.188 7.260 6.589 11.092 hybrid contribution -0.463 -1.602 -0.717 1.815 sum -5.651 5.658 5.872 9.921 Atomic orbital electron populations 1.20303 0.84248 1.04647 1.04023 1.24254 0.96366 0.83314 0.97613 1.70242 1.01493 1.29683 1.25831 1.23818 0.92353 0.90517 0.99874 1.20423 0.88633 0.96605 0.96485 0.87746 1.22861 0.93464 1.03247 0.96222 1.21868 0.97756 0.99148 0.81023 1.58986 1.20416 1.83547 1.22147 1.01222 0.71838 0.72897 0.72761 1.93543 1.55415 1.70426 1.78339 1.93560 1.83782 1.85833 1.32941 1.57500 1.59481 1.26195 1.40008 1.21243 0.92435 1.01863 0.88471 1.19632 0.95062 0.87655 0.88783 1.21458 1.08103 1.21150 1.06786 0.89481 1.24789 0.94630 0.95863 0.97035 1.69935 1.17415 1.26742 1.37857 0.87105 0.78954 0.79734 0.85547 1.20208 1.21215 1.18629 1.21770 0.79160 1.04093 0.94736 1.78517 0.95405 1.11202 1.22626 1.48097 1.04488 1.10010 1.56555 0.71371 0.89486 0.88769 0.90117 0.89490 0.90082 0.90935 0.91474 0.93713 0.92706 0.90608 0.95204 0.93710 0.93156 0.91431 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.26 3.61 8.24 -155.70 -1.28 2.33 16 3 N -0.54 -8.86 11.19 -8.16 -0.09 -8.96 16 4 C 0.22 3.84 6.71 -156.86 -1.05 2.79 16 5 C 0.00 0.02 3.47 -89.92 -0.31 -0.30 16 6 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 7 C -0.12 -1.64 6.52 -24.58 -0.16 -1.80 16 8 C 0.13 1.83 6.98 -2.53 -0.02 1.81 16 9 N -1.01 -18.21 3.75 -111.41 -0.42 -18.63 16 10 S 2.80 57.36 6.31 -107.50 -0.68 56.69 16 11 O -0.99 -20.48 16.80 -57.17 -0.96 -21.44 16 12 O -0.98 -22.84 16.27 -57.17 -0.93 -23.77 16 13 N -0.99 -20.60 3.23 -123.05 -0.40 -21.00 16 14 C 0.11 1.83 10.31 59.85 0.62 2.45 16 15 C 0.21 5.05 4.48 -5.19 -0.02 5.03 16 16 C -0.54 -14.17 9.51 -34.44 -0.33 -14.50 16 17 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.88 -24.90 13.96 55.43 0.77 -24.12 16 20 Si 0.86 20.89 27.47 -169.99 -4.67 16.22 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.31 6.54 56.52 0.37 -5.95 16 24 C 0.13 2.37 6.59 -3.05 -0.02 2.35 16 25 N -0.25 -4.88 12.39 32.42 0.40 -4.48 16 26 N -0.47 -7.34 7.45 32.62 0.24 -7.09 16 27 H 0.44 5.72 8.96 -182.33 -1.63 4.09 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.83 7.79 -51.93 -0.40 0.43 16 37 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 38 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 39 H 0.05 1.13 5.97 -51.93 -0.31 0.82 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.10 2.18 7.15 -51.93 -0.37 1.81 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -34.94 361.42 -10.92 -45.86 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.34 Total: 3.23 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.30 Total: 2.05 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: 0.51 Total: -84.28 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.89 Total: -45.21 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 57.36 SS G_CDS: -0.68 Total: 56.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.94 -10.92 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363929735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.692 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds