Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99999 * 2 1 4 4 C 1.50701 * 109.46992 * 85.00120 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99594 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 119.99875 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.47061 * 90.00257 * 8 6 4 10 10 H 1.48497 * 109.46906 * 209.99430 * 8 6 4 11 11 H 1.48498 * 109.47403 * 329.99876 * 8 6 4 12 12 S 1.65593 * 119.99605 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40784 * 23.53826 * 12 2 1 14 14 O 1.42105 * 106.40278 * 156.45824 * 12 2 1 15 15 N 1.65598 * 107.21993 * 269.99784 * 12 2 1 16 16 C 1.47021 * 125.64845 * 269.69749 * 15 12 2 17 17 C 1.54336 * 107.26794 * 178.84953 * 16 15 12 18 18 C 1.55156 * 103.01743 * 338.13717 * 17 16 15 19 19 H 1.08999 * 111.04117 * 277.22025 * 18 17 16 20 20 C 1.50696 * 111.00557 * 153.38189 * 18 17 16 21 21 N 1.30522 * 126.34680 * 307.83120 * 20 18 17 22 22 N 1.28602 * 109.67250 * 179.97438 * 21 20 18 23 23 C 1.30518 * 109.67436 * 359.97438 * 22 21 20 24 24 N 1.35494 * 126.34725 * 127.51116 * 20 18 17 25 25 C 1.46498 * 126.97958 * 0.04904 * 24 20 18 26 26 C 1.47427 * 125.64910 * 89.99874 * 15 12 2 27 27 H 1.09000 * 109.47587 * 89.99812 * 1 2 3 28 28 H 1.08997 * 109.47205 * 209.99963 * 1 2 3 29 29 H 1.09003 * 109.46728 * 329.99785 * 1 2 3 30 30 H 1.09002 * 109.47391 * 325.00111 * 3 2 1 31 31 H 1.09001 * 109.46813 * 205.00167 * 3 2 1 32 32 H 0.97002 * 119.99739 * 180.02562 * 7 6 4 33 33 H 1.09010 * 109.88388 * 298.39024 * 16 15 12 34 34 H 1.09003 * 109.88572 * 59.55258 * 16 15 12 35 35 H 1.08999 * 110.85055 * 219.67613 * 17 16 15 36 36 H 1.08997 * 110.52125 * 96.44694 * 17 16 15 37 37 H 1.07998 * 126.34668 * 180.02562 * 23 22 21 38 38 H 1.08996 * 109.47504 * 89.99332 * 25 24 20 39 39 H 1.09008 * 109.47046 * 209.99524 * 25 24 20 40 40 H 1.09002 * 109.47233 * 329.99066 * 25 24 20 41 41 H 1.08997 * 110.36777 * 322.93407 * 26 15 12 42 42 H 1.09003 * 110.36255 * 85.14888 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 1.4154 5 1 1.9290 1.1934 2.2332 6 6 3.0007 2.9503 1.6665 7 7 3.1267 3.3836 2.9017 8 14 3.7147 3.9397 0.2520 9 1 2.6963 4.8997 -0.2443 10 1 4.9095 4.6852 0.7230 11 1 4.1060 3.0208 -0.8469 12 16 2.2929 -1.4341 -0.0006 13 8 1.4112 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5380 -1.8594 1.5809 16 6 3.7026 -1.4874 2.3976 17 6 3.4828 -2.0799 3.8056 18 6 1.9454 -2.2807 3.8643 19 1 1.4397 -1.3540 4.1354 20 6 1.5814 -3.3900 4.8171 21 7 2.0672 -4.6014 4.8158 22 7 1.5340 -5.2827 5.7673 23 6 0.6842 -4.5368 6.4192 24 7 0.6937 -3.3128 5.8378 25 6 -0.0977 -2.1444 6.2310 26 6 1.6277 -2.6789 2.4013 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6502 2.0043 -0.5894 31 1 3.1858 1.1176 -0.4343 32 1 3.5902 4.2173 3.0783 33 1 4.6108 -1.8993 1.9576 34 1 3.7788 -0.4019 2.4620 35 1 3.8101 -1.3816 4.5759 36 1 4.0003 -3.0342 3.9036 37 1 0.0872 -4.8380 7.2672 38 1 -1.0472 -2.1518 5.6958 39 1 -0.2853 -2.1771 7.3043 40 1 0.4506 -1.2349 5.9856 41 1 0.5897 -2.4478 2.1621 42 1 1.8257 -3.7391 2.2435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365729891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = 18.894002 kcal Electronic energy + Delta-G solvation = -27471.495644 eV Core-core repulsion = 23615.532354 eV Total energy + Delta-G solvation = -3855.963291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.21635 -38.30584 -36.76224 -35.68137 -35.31951 -35.18381 -32.52954 -32.27845 -29.66019 -28.57949 -28.36921 -27.75121 -25.24652 -23.37271 -22.46196 -22.03461 -21.66622 -20.05258 -18.52337 -17.60876 -17.34535 -16.91915 -16.76240 -16.39934 -15.96697 -15.45981 -15.08611 -14.47355 -13.98735 -13.88491 -13.66248 -13.50810 -13.26467 -13.20180 -13.08783 -12.71152 -12.49807 -12.47452 -11.92499 -11.72089 -11.61141 -11.55443 -11.39488 -11.38120 -11.32229 -11.14809 -10.81540 -10.75304 -10.57804 -10.35082 -10.30460 -10.22602 -9.67214 -9.22553 -8.72917 -8.66079 -8.16680 -6.25013 -4.25033 1.10329 1.67625 2.32259 2.80079 3.19840 3.28125 3.34755 3.37308 3.99970 4.14056 4.29113 4.36130 4.44322 4.52695 4.69972 4.79445 4.85179 5.04719 5.09503 5.16624 5.27571 5.38181 5.50646 5.53012 5.63224 5.80605 5.92791 5.96734 5.99911 6.05598 6.13150 6.19076 6.32997 6.36943 6.56725 6.65948 6.70314 6.78661 7.05162 7.33391 7.46746 8.32447 8.66021 8.76915 9.36784 10.86935 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004458 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.992734 B = 6278.673104 C = 7229.115179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.992 5.992 3 C 0.212 3.788 4 C -0.541 4.541 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.866 3.134 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.260 1.260 12 S 2.803 3.197 13 O -0.991 6.991 14 O -0.973 6.973 15 N -1.013 6.013 16 C 0.120 3.880 17 C -0.110 4.110 18 C -0.018 4.018 19 H 0.106 0.894 20 C 0.194 3.806 21 N -0.288 5.288 22 N -0.299 5.299 23 C 0.143 3.857 24 N -0.475 5.475 25 C 0.068 3.932 26 C 0.144 3.856 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.217 0.783 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -8.209 6.907 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.833 5.833 3 C 0.088 3.912 4 C -0.579 4.579 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.693 3.307 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.184 1.184 12 S 2.812 3.188 13 O -0.976 6.976 14 O -0.958 6.958 15 N -0.851 5.851 16 C -0.005 4.005 17 C -0.150 4.150 18 C -0.041 4.041 19 H 0.124 0.876 20 C -0.074 4.074 21 N -0.128 5.128 22 N -0.138 5.138 23 C -0.145 4.145 24 N -0.166 5.166 25 C -0.075 4.075 26 C 0.017 3.983 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.233 0.767 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.239 -9.707 5.760 12.897 hybrid contribution -0.778 2.146 0.435 2.323 sum -7.016 -7.562 6.195 12.032 Atomic orbital electron populations 1.21255 0.79765 1.02332 1.00766 1.57537 1.14349 1.22840 1.88574 1.19635 0.92228 0.80825 0.98506 1.21420 1.37181 1.07503 0.91838 0.90079 1.24826 0.95202 0.97075 0.95459 1.69870 1.42401 1.22018 1.18837 0.86982 0.79381 0.80898 0.83454 1.20044 1.20882 1.18417 1.01288 0.73022 0.72480 0.72022 1.93553 1.67374 1.60097 1.76532 1.93568 1.40795 1.85250 1.76138 1.59017 1.30152 1.65252 1.30701 1.21796 0.87459 1.02063 0.89229 1.22657 0.92561 1.02358 0.97394 1.20814 0.98893 0.92917 0.91439 0.87557 1.24604 0.92906 0.97281 0.92571 1.74252 1.21926 1.01046 1.15601 1.74259 1.08999 1.26106 1.04423 1.26392 1.03166 0.82190 1.02719 1.46229 1.32887 1.12557 1.24917 1.22197 0.96199 0.86558 1.02532 1.21765 0.93296 0.95729 0.87518 0.93563 0.92796 0.90576 0.95001 0.93402 0.92477 0.91276 0.88758 0.89681 0.89702 0.76676 0.89678 0.88885 0.88416 0.91058 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.68 10.31 59.85 0.62 2.30 16 2 N -0.99 -19.38 3.23 -123.05 -0.40 -19.78 16 3 C 0.21 4.74 4.48 -5.19 -0.02 4.71 16 4 C -0.54 -13.38 9.51 -34.44 -0.33 -13.71 16 5 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 6 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.89 -24.47 13.96 55.43 0.77 -23.70 16 8 Si 0.87 19.93 27.47 -169.99 -4.67 15.26 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.26 -5.90 6.54 56.52 0.37 -5.54 16 12 S 2.80 55.09 6.31 -107.50 -0.68 54.41 16 13 O -0.99 -20.19 16.80 -57.17 -0.96 -21.15 16 14 O -0.97 -21.90 16.27 -57.17 -0.93 -22.83 16 15 N -1.01 -17.25 3.75 -111.41 -0.42 -17.66 16 16 C 0.12 1.95 6.99 -3.06 -0.02 1.93 16 17 C -0.11 -1.49 6.41 -24.89 -0.16 -1.65 16 18 C -0.02 -0.24 3.42 -89.63 -0.31 -0.54 16 19 H 0.11 1.27 6.97 -51.93 -0.36 0.91 16 20 C 0.19 2.52 6.70 -154.99 -1.04 1.48 16 21 N -0.29 -4.47 11.93 32.79 0.39 -4.08 16 22 N -0.30 -4.32 12.21 29.69 0.36 -3.96 16 23 C 0.14 1.44 12.74 -89.94 -1.15 0.30 16 24 N -0.48 -4.74 3.15 -122.69 -0.39 -5.13 16 25 C 0.07 0.40 10.95 59.85 0.66 1.05 16 26 C 0.14 2.10 6.44 -2.53 -0.02 2.08 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.76 7.79 -51.93 -0.40 0.35 16 29 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 31 H 0.05 1.14 5.97 -51.93 -0.31 0.83 16 32 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 34 H 0.09 1.75 7.71 -51.93 -0.40 1.35 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 37 H 0.22 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.10 0.61 7.17 -51.93 -0.37 0.24 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 LS Contribution 359.58 15.07 5.42 5.42 Total: -1.00 -34.20 359.58 -9.39 -43.58 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.03 Total: -0.28 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.86 Total: -0.12 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: 0.33 Total: -74.31 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -1.89 Total: -43.97 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Atomic # 16 Polarization: 55.09 SS G_CDS: -0.68 Total: 54.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.20 -9.39 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365729891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.478 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds