Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00097 * 2 1 4 4 C 1.50699 * 109.47133 * 275.00139 * 3 2 1 5 5 H 1.08000 * 120.00093 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99776 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00374 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00011 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47136 * 119.99555 * 8 6 4 11 11 H 1.48503 * 109.47201 * 239.99686 * 8 6 4 12 12 S 1.65606 * 120.00154 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40058 * 336.45962 * 12 2 1 14 14 O 1.42097 * 106.40231 * 203.54354 * 12 2 1 15 15 N 1.65595 * 107.21790 * 89.99964 * 12 2 1 16 16 C 1.47425 * 125.64857 * 269.69296 * 15 12 2 17 17 C 1.54910 * 104.83231 * 156.13658 * 16 15 12 18 18 C 1.55160 * 101.58122 * 37.00939 * 17 16 15 19 19 H 1.09002 * 110.71871 * 82.86501 * 18 17 16 20 20 C 1.50694 * 110.87022 * 206.06013 * 18 17 16 21 21 N 1.30521 * 126.34552 * 53.64027 * 20 18 17 22 22 N 1.28596 * 109.67376 * 179.97438 * 21 20 18 23 23 C 1.30520 * 109.67174 * 359.97438 * 22 21 20 24 24 N 1.35490 * 107.30604 * 359.77427 * 23 22 21 25 25 C 1.46507 * 126.97845 * 180.22531 * 24 23 22 26 26 C 1.47026 * 125.65010 * 90.00272 * 15 12 2 27 27 H 1.09000 * 109.47099 * 269.99688 * 1 2 3 28 28 H 1.08993 * 109.46679 * 30.00298 * 1 2 3 29 29 H 1.08999 * 109.46966 * 150.00076 * 1 2 3 30 30 H 1.09004 * 109.47091 * 35.00291 * 3 2 1 31 31 H 1.09008 * 109.46905 * 155.00045 * 3 2 1 32 32 H 0.96997 * 120.00400 * 180.02562 * 7 6 4 33 33 H 1.09001 * 110.36478 * 274.97610 * 16 15 12 34 34 H 1.08998 * 110.36859 * 37.29988 * 16 15 12 35 35 H 1.08991 * 111.00552 * 278.93287 * 17 16 15 36 36 H 1.09004 * 111.03615 * 155.09334 * 17 16 15 37 37 H 1.08006 * 126.34158 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.46716 * 270.15552 * 25 24 23 39 39 H 1.08997 * 109.46874 * 30.15671 * 25 24 23 40 40 H 1.08991 * 109.46876 * 150.15482 * 25 24 23 41 41 H 1.09004 * 109.87531 * 300.21132 * 26 15 12 42 42 H 1.08996 * 109.88343 * 61.21852 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5035 3.6469 -0.6706 8 14 3.1797 3.5660 -3.4209 9 1 2.5322 2.6063 -4.3508 10 1 2.5290 4.8948 -3.5480 11 1 4.6208 3.6862 -3.7587 12 16 2.2931 -1.4342 -0.0006 13 8 1.4114 -2.4068 0.5434 14 8 3.5759 -1.1570 0.5440 15 7 2.5382 -1.8580 -1.5826 16 6 1.6310 -2.6822 -2.4017 17 6 1.9486 -2.2865 -3.8654 18 6 3.4854 -2.0810 -3.8060 19 1 4.0059 -3.0340 -3.9013 20 6 3.9400 -1.1185 -4.8727 21 7 3.4772 0.0847 -5.0770 22 7 4.0935 0.6228 -6.0692 23 6 4.9777 -0.2124 -6.5425 24 7 4.9093 -1.3393 -5.7933 25 6 5.7168 -2.5517 -5.9493 26 6 3.6997 -1.4799 -2.4009 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3632 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6502 2.0043 0.5895 31 1 3.1859 1.1176 0.4343 32 1 3.9669 4.4805 -0.8471 33 1 1.8332 -3.7414 -2.2427 34 1 0.5921 -2.4536 -2.1640 35 1 1.4411 -1.3616 -4.1390 36 1 1.6884 -3.0908 -4.5534 37 1 5.6431 -0.0365 -7.3748 38 1 5.2158 -3.2363 -6.6337 39 1 6.6950 -2.2874 -6.3510 40 1 5.8404 -3.0332 -4.9793 41 1 3.7677 -0.3941 -2.4686 42 1 4.6113 -1.8814 -1.9585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365729893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = 20.535237 kcal Electronic energy + Delta-G solvation = -28035.458923 eV Core-core repulsion = 24179.566801 eV Total energy + Delta-G solvation = -3855.892121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.03659 -38.33245 -36.64024 -35.38696 -35.19887 -35.06734 -32.30908 -32.20426 -29.65769 -28.43315 -27.71772 -27.62596 -24.96956 -23.18815 -22.45613 -22.09581 -21.83037 -19.94665 -18.47969 -17.44492 -17.21125 -16.74982 -16.28950 -16.20054 -15.88317 -15.32134 -14.97132 -14.35798 -14.15157 -13.65754 -13.59324 -13.47348 -13.17434 -13.13408 -12.99910 -12.56031 -12.25569 -12.00199 -11.74215 -11.65272 -11.58471 -11.44413 -11.32623 -11.14116 -10.99506 -10.96222 -10.85347 -10.49635 -10.37858 -10.16703 -10.10228 -9.77767 -9.55046 -9.08375 -8.62823 -8.31318 -7.93849 -5.92859 -3.99945 1.23522 1.83439 2.42980 3.05880 3.48490 3.50822 3.61519 3.87157 4.07776 4.25460 4.35999 4.52258 4.55439 4.64555 4.66977 4.74590 4.89158 5.04508 5.08490 5.31383 5.38033 5.42756 5.53134 5.56582 5.71349 5.75953 5.85893 5.98267 6.13706 6.19573 6.20346 6.29136 6.35716 6.46834 6.59886 6.76960 6.85502 7.42173 7.55098 7.72132 8.04224 8.30374 8.91256 9.07971 9.69645 11.14021 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.007005 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.534673 B = 3995.916270 C = 5947.140880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.994 5.994 3 C 0.243 3.757 4 C -0.534 4.534 5 H 0.070 0.930 6 C 0.066 3.934 7 N -0.897 5.897 8 Si 0.882 3.118 9 H -0.237 1.237 10 H -0.294 1.294 11 H -0.291 1.291 12 S 2.800 3.200 13 O -0.996 6.996 14 O -0.974 6.974 15 N -1.014 6.014 16 C 0.127 3.873 17 C -0.115 4.115 18 C -0.011 4.011 19 H 0.095 0.905 20 C 0.182 3.818 21 N -0.260 5.260 22 N -0.292 5.292 23 C 0.140 3.860 24 N -0.481 5.481 25 C 0.073 3.927 26 C 0.132 3.868 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.215 0.785 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -16.091 -11.103 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.836 5.836 3 C 0.121 3.879 4 C -0.573 4.573 5 H 0.088 0.912 6 C -0.136 4.136 7 N -0.535 5.535 8 Si 0.709 3.291 9 H -0.159 1.159 10 H -0.221 1.221 11 H -0.217 1.217 12 S 2.810 3.190 13 O -0.980 6.980 14 O -0.959 6.959 15 N -0.852 5.852 16 C 0.001 3.999 17 C -0.155 4.155 18 C -0.033 4.033 19 H 0.113 0.887 20 C -0.085 4.085 21 N -0.100 5.100 22 N -0.131 5.131 23 C -0.147 4.147 24 N -0.173 5.173 25 C -0.071 4.071 26 C 0.005 3.995 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.232 0.768 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.120 -15.129 -10.042 18.193 hybrid contribution 1.106 -0.316 -1.639 2.002 sum 2.226 -15.446 -11.681 19.493 Atomic orbital electron populations 1.21215 0.80125 1.02080 1.00513 1.57675 1.14220 1.23524 1.88182 1.19267 0.91961 0.78727 0.97957 1.21605 1.36274 1.06773 0.92676 0.91216 1.24929 0.94882 0.96446 0.97368 1.69975 1.37235 1.15167 1.31156 0.86628 0.78150 0.78825 0.85528 1.15930 1.22111 1.21711 1.01337 0.73085 0.72598 0.72006 1.93535 1.67375 1.60615 1.76495 1.93570 1.40951 1.85262 1.76070 1.59120 1.30201 1.65198 1.30654 1.21862 0.93991 0.94452 0.89559 1.22854 0.92852 1.03366 0.96443 1.20569 0.97850 0.94492 0.90389 0.88676 1.24623 0.91898 0.96743 0.95275 1.74499 1.21508 1.03583 1.10396 1.74383 1.07075 1.24918 1.06699 1.26416 1.03517 0.84022 1.00783 1.46224 1.29817 1.15323 1.25915 1.22077 0.95577 0.84981 1.04422 1.21690 0.87795 1.02676 0.87328 0.93802 0.90703 0.93069 0.94508 0.93384 0.93001 0.91600 0.90609 0.88734 0.90182 0.76832 0.90124 0.89060 0.89058 0.88296 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.91 10.31 59.85 0.62 2.53 16 2 N -0.99 -21.38 3.23 -123.05 -0.40 -21.78 16 3 C 0.24 6.28 5.41 -5.19 -0.03 6.25 16 4 C -0.53 -14.61 8.92 -34.44 -0.31 -14.92 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.07 1.91 5.46 -17.82 -0.10 1.82 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 8 Si 0.88 22.98 29.54 -169.99 -5.02 17.96 16 9 H -0.24 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 11 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 12 S 2.80 57.34 6.31 -107.50 -0.68 56.66 16 13 O -1.00 -20.54 16.79 -57.17 -0.96 -21.50 16 14 O -0.97 -23.13 16.27 -57.17 -0.93 -24.06 16 15 N -1.01 -17.22 3.76 -111.42 -0.42 -17.64 16 16 C 0.13 1.64 6.98 -2.53 -0.02 1.62 16 17 C -0.12 -1.37 6.53 -24.58 -0.16 -1.53 16 18 C -0.01 -0.13 3.30 -89.94 -0.30 -0.43 16 19 H 0.10 0.83 7.03 -51.93 -0.37 0.46 16 20 C 0.18 2.66 6.56 -154.99 -1.02 1.64 16 21 N -0.26 -5.01 11.90 32.79 0.39 -4.62 16 22 N -0.29 -5.32 12.21 29.69 0.36 -4.96 16 23 C 0.14 1.74 12.74 -89.95 -1.15 0.59 16 24 N -0.48 -5.33 3.15 -122.69 -0.39 -5.71 16 25 C 0.07 0.39 10.91 59.85 0.65 1.04 16 26 C 0.13 2.19 6.57 -3.07 -0.02 2.17 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 29 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 30 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.05 1.37 6.92 -51.92 -0.36 1.01 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.22 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.42 7.27 -51.93 -0.38 0.04 16 41 H 0.10 2.06 7.25 -51.93 -0.38 1.68 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -38.82 362.96 -9.71 -48.53 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.06 Total: -2.82 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.82 Total: 0.80 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: 0.29 Total: -81.05 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.89 Total: -45.56 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Atomic # 16 Polarization: 57.34 SS G_CDS: -0.68 Total: 56.66 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.82 -9.71 -48.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365729893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.069 kcal (2) G-P(sol) polarization free energy of solvation -38.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds