Wall clock time and date at job start Tue Mar 31 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00097 * 2 1 4 4 C 1.50699 * 109.47133 * 275.00139 * 3 2 1 5 5 H 1.08000 * 120.00093 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99776 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00374 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00011 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47136 * 119.99555 * 8 6 4 11 11 H 1.48503 * 109.47201 * 239.99686 * 8 6 4 12 12 S 1.65606 * 120.00154 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40058 * 336.45962 * 12 2 1 14 14 O 1.42097 * 106.40231 * 203.54354 * 12 2 1 15 15 N 1.65595 * 107.21790 * 89.99964 * 12 2 1 16 16 C 1.47425 * 125.64857 * 269.69296 * 15 12 2 17 17 C 1.54910 * 104.83231 * 156.13658 * 16 15 12 18 18 C 1.55160 * 101.58122 * 37.00939 * 17 16 15 19 19 H 1.09002 * 110.71871 * 82.86501 * 18 17 16 20 20 C 1.50694 * 110.87022 * 206.06013 * 18 17 16 21 21 N 1.30521 * 126.34552 * 53.64027 * 20 18 17 22 22 N 1.28596 * 109.67376 * 179.97438 * 21 20 18 23 23 C 1.30520 * 109.67174 * 359.97438 * 22 21 20 24 24 N 1.35490 * 107.30604 * 359.77427 * 23 22 21 25 25 C 1.46507 * 126.97845 * 180.22531 * 24 23 22 26 26 C 1.47026 * 125.65010 * 90.00272 * 15 12 2 27 27 H 1.09000 * 109.47099 * 269.99688 * 1 2 3 28 28 H 1.08993 * 109.46679 * 30.00298 * 1 2 3 29 29 H 1.08999 * 109.46966 * 150.00076 * 1 2 3 30 30 H 1.09004 * 109.47091 * 35.00291 * 3 2 1 31 31 H 1.09008 * 109.46905 * 155.00045 * 3 2 1 32 32 H 0.96997 * 120.00400 * 180.02562 * 7 6 4 33 33 H 1.09001 * 110.36478 * 274.97610 * 16 15 12 34 34 H 1.08998 * 110.36859 * 37.29988 * 16 15 12 35 35 H 1.08991 * 111.00552 * 278.93287 * 17 16 15 36 36 H 1.09004 * 111.03615 * 155.09334 * 17 16 15 37 37 H 1.08006 * 126.34158 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.46716 * 270.15552 * 25 24 23 39 39 H 1.08997 * 109.46874 * 30.15671 * 25 24 23 40 40 H 1.08991 * 109.46876 * 150.15482 * 25 24 23 41 41 H 1.09004 * 109.87531 * 300.21132 * 26 15 12 42 42 H 1.08996 * 109.88343 * 61.21852 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6664 7 7 3.5035 3.6469 -0.6706 8 14 3.1797 3.5660 -3.4209 9 1 2.5322 2.6063 -4.3508 10 1 2.5290 4.8948 -3.5480 11 1 4.6208 3.6862 -3.7587 12 16 2.2931 -1.4342 -0.0006 13 8 1.4114 -2.4068 0.5434 14 8 3.5759 -1.1570 0.5440 15 7 2.5382 -1.8580 -1.5826 16 6 1.6310 -2.6822 -2.4017 17 6 1.9486 -2.2865 -3.8654 18 6 3.4854 -2.0810 -3.8060 19 1 4.0059 -3.0340 -3.9013 20 6 3.9400 -1.1185 -4.8727 21 7 3.4772 0.0847 -5.0770 22 7 4.0935 0.6228 -6.0692 23 6 4.9777 -0.2124 -6.5425 24 7 4.9093 -1.3393 -5.7933 25 6 5.7168 -2.5517 -5.9493 26 6 3.6997 -1.4799 -2.4009 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3632 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6502 2.0043 0.5895 31 1 3.1859 1.1176 0.4343 32 1 3.9669 4.4805 -0.8471 33 1 1.8332 -3.7414 -2.2427 34 1 0.5921 -2.4536 -2.1640 35 1 1.4411 -1.3616 -4.1390 36 1 1.6884 -3.0908 -4.5534 37 1 5.6431 -0.0365 -7.3748 38 1 5.2158 -3.2363 -6.6337 39 1 6.6950 -2.2874 -6.3510 40 1 5.8404 -3.0332 -4.9793 41 1 3.7677 -0.3941 -2.4686 42 1 4.6113 -1.8814 -1.9585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365729893.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:17 Heat of formation + Delta-G solvation = -8.363157 kcal Electronic energy + Delta-G solvation = -28036.712051 eV Core-core repulsion = 24179.566801 eV Total energy + Delta-G solvation = -3857.145250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.03255 -39.46537 -38.34381 -37.20805 -36.92454 -35.91702 -34.47304 -33.32442 -30.75890 -29.71202 -29.45516 -28.30327 -26.76696 -24.45730 -24.09917 -23.36077 -22.85463 -20.94558 -19.99033 -18.92335 -18.67123 -18.27095 -17.93808 -17.31310 -17.12881 -16.79684 -16.31075 -15.94280 -15.37158 -15.15308 -14.88058 -14.70426 -14.39853 -14.20147 -14.01320 -13.97046 -13.84778 -13.44236 -13.39188 -13.25616 -13.03590 -12.92737 -12.77312 -12.69971 -12.55825 -12.44446 -12.37739 -12.19267 -11.94181 -11.76284 -11.63256 -11.11649 -10.97485 -10.59504 -10.22292 -9.95357 -9.73289 -8.18374 -6.28693 -0.36398 0.90298 1.36959 1.45191 1.66006 1.74753 1.95566 1.99296 2.47243 2.55587 3.13954 3.16236 3.31632 3.60940 3.72467 3.81521 3.94328 4.06241 4.07096 4.34880 4.36540 4.48833 4.51183 4.63163 4.71649 4.75583 4.78255 4.85732 4.91626 4.95264 5.03798 5.06369 5.13061 5.25536 5.25883 5.32547 5.44346 5.55036 5.76772 5.93452 6.06491 6.09815 6.85495 7.43129 7.87021 8.89004 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.007005 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.534673 B = 3995.916270 C = 5947.140880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.005 6.005 3 C 0.259 3.741 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.022 3.978 7 N -0.930 5.930 8 Si 0.941 3.059 9 H -0.238 1.238 10 H -0.291 1.291 11 H -0.302 1.302 12 S 2.813 3.187 13 O -0.995 6.995 14 O -1.013 7.013 15 N -1.013 6.013 16 C 0.117 3.883 17 C -0.106 4.106 18 C 0.000 4.000 19 H 0.146 0.854 20 C 0.178 3.822 21 N -0.326 5.326 22 N -0.361 5.361 23 C 0.158 3.842 24 N -0.472 5.472 25 C 0.061 3.939 26 C 0.128 3.872 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.262 0.738 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.260 0.740 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -19.415 -13.309 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.845 5.845 3 C 0.135 3.865 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.177 4.177 7 N -0.571 5.571 8 Si 0.768 3.232 9 H -0.161 1.161 10 H -0.218 1.218 11 H -0.230 1.230 12 S 2.823 3.177 13 O -0.979 6.979 14 O -0.998 6.998 15 N -0.854 5.854 16 C -0.007 4.007 17 C -0.146 4.146 18 C -0.022 4.022 19 H 0.164 0.836 20 C -0.091 4.091 21 N -0.165 5.165 22 N -0.200 5.200 23 C -0.130 4.130 24 N -0.163 5.163 25 C -0.079 4.079 26 C 0.001 3.999 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.276 0.724 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.215 -18.488 -12.247 22.210 hybrid contribution 1.108 0.587 -1.005 1.607 sum 2.322 -17.901 -13.252 22.393 Atomic orbital electron populations 1.21462 0.77979 1.03310 1.01931 1.57629 1.15777 1.22242 1.88896 1.18756 0.90809 0.80334 0.96568 1.21782 1.34700 1.06054 0.93344 0.91172 1.25542 0.95213 0.97098 0.99875 1.70057 1.38679 1.15799 1.32593 0.85728 0.77086 0.78175 0.82245 1.16068 1.21767 1.22975 1.00728 0.72116 0.72160 0.72662 1.93526 1.67155 1.60067 1.77185 1.93516 1.42875 1.85722 1.77692 1.58819 1.31310 1.65323 1.29967 1.22293 0.93468 0.95585 0.89381 1.22821 0.91946 1.03346 0.96492 1.20690 0.98963 0.95576 0.86954 0.83618 1.24806 0.92375 0.95965 0.96002 1.74328 1.24034 1.06144 1.11950 1.74220 1.09881 1.27653 1.08200 1.27196 1.01899 0.83316 1.00599 1.46477 1.28990 1.16467 1.24319 1.22573 0.96171 0.83165 1.06029 1.21686 0.88024 1.00024 0.90161 0.92328 0.91071 0.90269 0.95990 0.96484 0.92940 0.88051 0.90200 0.91997 0.85808 0.72443 0.87566 0.86719 0.87878 0.93397 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.45 10.31 127.77 1.32 4.76 16 2 N -1.00 -43.77 3.23 -543.21 -1.75 -45.53 16 3 C 0.26 13.93 5.41 85.63 0.46 14.39 16 4 C -0.52 -29.37 8.92 25.60 0.23 -29.14 16 5 H 0.07 3.91 7.81 -2.91 -0.02 3.89 16 6 C 0.02 1.30 5.46 84.65 0.46 1.76 16 7 N -0.93 -58.11 13.29 21.45 0.28 -57.82 16 8 Si 0.94 49.60 29.54 68.60 2.03 51.63 16 9 H -0.24 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 11 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 12 S 2.81 114.70 6.31 -56.49 -0.36 114.34 16 13 O -1.00 -39.49 16.79 -128.00 -2.15 -41.64 16 14 O -1.01 -49.31 16.27 -128.00 -2.08 -51.39 16 15 N -1.01 -33.20 3.76 -506.43 -1.90 -35.11 16 16 C 0.12 2.65 6.98 86.86 0.61 3.25 16 17 C -0.11 -2.20 6.53 31.99 0.21 -1.99 16 18 C 0.00 0.00 3.30 -10.35 -0.03 -0.03 16 19 H 0.15 1.74 7.03 -2.39 -0.02 1.73 16 20 C 0.18 4.92 6.56 137.98 0.91 5.83 16 21 N -0.33 -12.62 11.90 -50.16 -0.60 -13.21 16 22 N -0.36 -13.16 12.21 -59.99 -0.73 -13.89 16 23 C 0.16 3.62 12.74 180.11 2.30 5.91 16 24 N -0.47 -9.03 3.15 -542.08 -1.71 -10.74 16 25 C 0.06 0.35 10.91 127.77 1.39 1.75 16 26 C 0.13 4.17 6.57 86.73 0.57 4.74 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 29 H 0.08 2.30 7.79 -2.39 -0.02 2.28 16 30 H 0.02 1.23 8.11 -2.38 -0.02 1.21 16 31 H 0.02 1.03 6.92 -2.38 -0.02 1.01 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.06 1.72 7.88 -2.39 -0.02 1.70 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.26 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.10 0.41 7.27 -2.39 -0.02 0.39 16 41 H 0.05 2.07 7.25 -2.38 -0.02 2.05 16 42 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -90.69 362.96 0.47 -90.21 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: 1.02 Total: 1.91 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 8.42 Total: 11.24 kcal Atomic # 7 Polarization: -169.89 SS G_CDS: -6.41 Total: -176.30 kcal Atomic # 8 Polarization: -88.80 SS G_CDS: -4.23 Total: -93.03 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Atomic # 16 Polarization: 114.70 SS G_CDS: -0.36 Total: 114.34 kcal Total: -90.69 0.47 -90.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365729893.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.850 kcal (2) G-P(sol) polarization free energy of solvation -90.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds