Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38476 * 120.81842 * 2 1 4 4 C 1.39289 * 119.19049 * 179.97438 * 3 2 1 5 5 C 1.48282 * 119.57153 * 180.02562 * 4 3 2 6 6 O 1.21513 * 119.99871 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00330 * 180.02562 * 5 4 3 8 8 C 1.40040 * 120.00557 * 180.02562 * 7 5 4 9 9 C 1.40436 * 125.97329 * 0.02562 * 8 7 5 10 10 C 1.35230 * 107.86178 * 179.76257 * 9 8 7 11 11 N 1.34970 * 107.86936 * 0.39058 * 10 9 8 12 12 C 1.46498 * 125.97286 * 179.87709 * 11 10 9 13 13 C 1.50696 * 109.47703 * 124.70912 * 12 11 10 14 14 H 1.08003 * 119.99554 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00532 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99540 * 359.72459 * 15 13 12 17 17 Si 1.86801 * 120.00068 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47117 * 179.72661 * 17 15 13 19 19 H 1.48508 * 109.46928 * 299.72209 * 17 15 13 20 20 H 1.48496 * 109.47336 * 59.71998 * 17 15 13 21 21 N 1.31236 * 125.97723 * 180.02562 * 8 7 5 22 22 N 1.32761 * 120.85597 * 0.27591 * 4 3 2 23 23 C 1.31384 * 121.79624 * 359.42622 * 22 4 3 24 24 C 1.39774 * 120.72143 * 0.57353 * 23 22 4 25 25 C 1.47988 * 120.46440 * 179.73734 * 24 23 22 26 26 N 1.34775 * 120.00208 * 6.11052 * 25 24 23 27 27 O 1.21537 * 120.00084 * 186.10202 * 25 24 23 28 28 H 1.09008 * 109.46882 * 96.37456 * 1 2 3 29 29 H 1.09003 * 109.47148 * 216.36996 * 1 2 3 30 30 H 1.08994 * 109.47394 * 336.37074 * 1 2 3 31 31 H 1.07995 * 120.40481 * 359.95384 * 3 2 1 32 32 H 0.97004 * 119.99308 * 359.97438 * 7 5 4 33 33 H 1.07996 * 126.06975 * 0.02562 * 9 8 7 34 34 H 1.08005 * 126.05935 * 180.27622 * 10 9 8 35 35 H 1.09005 * 109.47050 * 4.70961 * 12 11 10 36 36 H 1.09003 * 109.47343 * 244.71392 * 12 11 10 37 37 H 0.96993 * 120.00277 * 0.27843 * 16 15 13 38 38 H 1.08005 * 119.64290 * 180.26916 * 23 22 4 39 39 H 0.97000 * 119.99824 * 359.97438 * 26 25 24 40 40 H 0.97001 * 119.99920 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1892 0.0000 4 6 3.6088 1.1497 0.0005 5 6 4.3769 2.4180 0.0011 6 8 3.7915 3.4828 0.0007 7 7 5.7244 2.3899 0.0011 8 6 6.4498 3.5877 0.0022 9 6 5.9051 4.8821 0.0039 10 6 6.9305 5.7637 0.0098 11 7 8.0820 5.0596 0.0031 12 6 9.4346 5.6223 0.0037 13 6 10.2117 5.0612 1.1666 14 1 9.7448 4.3557 1.8379 15 6 11.5190 5.4477 1.3730 16 7 12.0895 6.3019 0.5518 17 14 12.4824 4.7516 2.8141 18 1 13.8557 5.3165 2.8106 19 1 11.8023 5.1118 4.0843 20 1 12.5547 3.2733 2.6934 21 7 7.7577 3.6970 0.0019 22 7 4.2570 -0.0089 -0.0044 23 6 3.6206 -1.1583 0.0012 24 6 2.2235 -1.2010 0.0006 25 6 1.5124 -2.4988 0.0011 26 7 2.2064 -3.6474 0.1263 27 8 0.3027 -2.5290 -0.1113 28 1 -0.3633 -0.1141 -1.0214 29 1 -0.3633 -0.8275 0.6094 30 1 -0.3634 0.9414 0.4119 31 1 1.6965 2.1358 -0.0008 32 1 6.1916 1.5398 0.0011 33 1 4.8538 5.1295 0.0049 34 1 6.8433 6.8402 0.0167 35 1 9.3769 6.7070 0.0948 36 1 9.9368 5.3622 -0.9282 37 1 11.5894 6.6630 -0.1967 38 1 4.1830 -2.0804 0.0012 39 1 3.1720 -3.6233 0.2157 40 1 1.7403 -4.4981 0.1269 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411962354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = 47.581917 kcal Electronic energy + Delta-G solvation = -26053.033995 eV Core-core repulsion = 22062.870754 eV Total energy + Delta-G solvation = -3990.163241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47920 -40.72365 -39.70615 -38.69806 -35.13678 -34.73244 -34.16641 -33.61900 -31.94825 -30.81405 -29.44488 -28.41384 -26.72988 -25.56623 -23.58388 -23.01376 -22.19548 -21.29117 -20.47702 -19.68690 -18.48376 -18.02273 -17.58042 -17.21297 -16.70722 -16.29192 -15.84899 -15.64443 -15.32959 -15.25379 -14.87858 -14.37265 -14.19925 -13.85792 -13.78835 -13.36546 -13.23353 -13.17455 -13.08471 -12.64864 -12.48548 -12.28600 -11.88096 -11.18987 -10.83697 -10.71395 -10.55138 -10.37769 -10.32742 -10.17021 -10.05777 -10.00083 -9.77839 -9.74688 -9.02410 -8.59582 -8.26067 -7.58463 -6.59554 -4.33669 -0.23881 0.65307 1.90201 2.47844 2.52935 2.80150 2.84926 3.30536 3.37059 3.38856 3.42752 3.57935 3.69392 3.76817 4.06390 4.17196 4.29780 4.40165 4.43751 4.65036 4.97988 5.14094 5.19414 5.21150 5.32544 5.40181 5.60014 5.68027 5.82622 5.98037 6.10056 6.19964 6.33784 6.42907 6.53741 6.68304 6.72206 7.10390 7.25775 7.42326 7.62769 7.66829 7.78992 8.03198 8.32267 8.49211 8.59696 9.34412 10.78092 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.002176 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.972856 B =12862.180540 C =13886.799454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.119 4.119 4 C 0.117 3.883 5 C 0.574 3.426 6 O -0.505 6.505 7 N -0.607 5.607 8 C 0.255 3.745 9 C -0.284 4.284 10 C 0.052 3.948 11 N -0.315 5.315 12 C 0.249 3.751 13 C -0.608 4.608 14 H 0.064 0.936 15 C 0.023 3.977 16 N -0.904 5.904 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.295 5.295 22 N -0.465 5.465 23 C 0.142 3.858 24 C -0.184 4.184 25 C 0.570 3.430 26 N -0.848 5.848 27 O -0.528 6.528 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.422 0.578 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.167 0.833 39 H 0.402 0.598 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 -16.799 -1.661 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 C -0.139 4.139 4 C -0.020 4.020 5 C 0.358 3.642 6 O -0.377 6.377 7 N -0.254 5.254 8 C 0.002 3.998 9 C -0.316 4.316 10 C -0.098 4.098 11 N -0.097 5.097 12 C 0.131 3.869 13 C -0.646 4.646 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.540 5.540 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.126 5.126 22 N -0.177 5.177 23 C -0.020 4.020 24 C -0.190 4.190 25 C 0.355 3.645 26 N -0.412 5.412 27 O -0.405 6.405 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.260 0.740 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.184 0.816 39 H 0.232 0.768 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.723 -16.332 -1.014 24.866 hybrid contribution -2.367 -0.451 -0.747 2.522 sum -21.090 -16.783 -1.761 27.010 Atomic orbital electron populations 1.21136 0.88308 1.04137 1.04395 1.20518 0.97940 0.90740 0.89832 1.22079 0.93383 0.99855 0.98629 1.21200 0.91670 0.91831 0.97272 1.17721 0.81396 0.87547 0.77540 1.90746 1.69308 1.29505 1.48185 1.42173 1.05263 1.07694 1.70241 1.19062 0.90502 0.86375 1.03859 1.21537 1.00761 0.89480 1.19782 1.22572 0.85881 0.98928 1.02401 1.48836 1.07406 1.01678 1.51751 1.19787 0.74204 0.93619 0.99334 1.22097 0.99862 1.30212 1.12475 0.91819 1.25928 0.95076 0.95056 1.02122 1.70849 1.39815 1.28275 1.15012 0.83418 0.75953 0.75964 0.74296 1.20521 1.21232 1.21112 1.77391 1.10425 0.97414 1.27412 1.67581 1.40575 0.97760 1.11773 1.22914 0.90152 0.96254 0.92666 1.20961 0.95238 0.94385 1.08371 1.17993 0.86749 0.83907 0.75804 1.43748 1.11925 1.08611 1.76943 1.90800 1.13552 1.87108 1.49082 0.89569 0.88193 0.91098 0.82242 0.74047 0.82059 0.81338 0.93531 0.94676 0.92274 0.81616 0.76781 0.75985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 8.83 36.01 0.32 -0.61 16 2 C 0.02 0.16 5.95 -103.93 -0.62 -0.46 16 3 C -0.12 -1.17 9.30 -39.10 -0.36 -1.53 16 4 C 0.12 1.37 6.75 -82.94 -0.56 0.81 16 5 C 0.57 8.56 7.78 -12.13 -0.09 8.46 16 6 O -0.50 -8.45 13.43 5.35 0.07 -8.38 16 7 N -0.61 -9.90 5.43 -11.87 -0.06 -9.97 16 8 C 0.26 5.16 8.10 -154.48 -1.25 3.91 16 9 C -0.28 -5.55 9.60 -39.83 -0.38 -5.94 16 10 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 11 N -0.32 -7.32 3.67 -62.56 -0.23 -7.55 16 12 C 0.25 6.25 5.57 -5.20 -0.03 6.22 16 13 C -0.61 -17.03 9.24 -34.44 -0.32 -17.35 16 14 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 15 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 16 N -0.90 -26.19 13.65 55.43 0.76 -25.44 16 17 Si 1.08 24.81 29.90 -169.99 -5.08 19.73 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 N -0.30 -6.86 12.42 31.42 0.39 -6.47 16 22 N -0.47 -4.81 9.52 -9.48 -0.09 -4.90 16 23 C 0.14 1.03 10.69 -17.17 -0.18 0.85 16 24 C -0.18 -1.44 5.90 -104.73 -0.62 -2.06 16 25 C 0.57 4.20 8.00 -12.26 -0.10 4.10 16 26 N -0.85 -2.86 8.83 30.56 0.27 -2.59 16 27 O -0.53 -5.47 14.33 5.33 0.08 -5.40 16 28 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.10 0.85 5.95 -51.93 -0.31 0.54 16 30 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 31 H 0.16 1.45 7.63 -52.49 -0.40 1.05 16 32 H 0.42 6.15 8.15 -40.82 -0.33 5.82 16 33 H 0.16 2.98 5.91 -52.49 -0.31 2.67 16 34 H 0.17 2.68 8.06 -52.48 -0.42 2.25 16 35 H 0.05 1.13 7.94 -51.93 -0.41 0.71 16 36 H 0.04 0.92 8.00 -51.93 -0.42 0.50 16 37 H 0.27 7.56 7.22 -40.82 -0.29 7.26 16 38 H 0.17 0.54 6.46 -52.48 -0.34 0.20 16 39 H 0.40 0.34 6.93 -40.82 -0.28 0.06 16 40 H 0.41 0.89 8.93 -40.82 -0.36 0.53 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -35.46 350.30 -7.05 -42.50 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.93 Total: 5.40 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.49 Total: -2.23 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: 1.03 Total: -56.91 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.15 Total: -13.77 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.46 -7.05 -42.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411962354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.087 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds