Wall clock time and date at job start Tue Mar 31 2020 05:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86796 * 119.99870 * 2 1 4 4 H 1.48502 * 109.47107 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47182 * 120.00217 * 3 2 1 7 7 C 1.40228 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99886 * 186.32371 * 7 2 1 9 9 C 1.41112 * 119.99714 * 6.32494 * 7 2 1 10 10 C 1.40889 * 120.09925 * 213.25653 * 9 7 2 11 11 C 1.36317 * 119.88803 * 179.69745 * 10 9 7 12 12 C 1.40014 * 120.10870 * 0.27404 * 11 10 9 13 13 C 1.47639 * 119.89485 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00067 * 334.00418 * 13 12 11 15 15 N 1.34781 * 119.99927 * 154.00938 * 13 12 11 16 16 C 1.47149 * 120.98278 * 353.43496 * 15 13 12 17 17 C 1.52872 * 108.60872 * 230.50330 * 16 15 13 18 18 O 1.42970 * 109.29686 * 307.93379 * 17 16 15 19 19 C 1.42956 * 114.16615 * 62.44689 * 18 17 16 20 20 C 1.47152 * 120.98037 * 173.71706 * 15 13 12 21 21 H 1.09007 * 109.67829 * 249.16109 * 20 15 13 22 22 C 1.50693 * 109.68481 * 9.71574 * 20 15 13 23 23 N 1.33317 * 126.55100 * 66.46525 * 22 20 15 24 24 N 1.28989 * 107.35889 * 180.02562 * 23 22 20 25 25 N 1.28783 * 108.72664 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.44991 * 180.02562 * 25 24 23 27 27 N 1.28881 * 109.09930 * 359.73685 * 25 24 23 28 28 C 1.40014 * 120.20818 * 359.97438 * 12 11 10 29 29 C 1.36314 * 120.10780 * 0.02562 * 28 12 11 30 30 H 0.97003 * 119.99885 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.05589 * 359.96652 * 10 9 7 32 32 H 1.08008 * 119.94682 * 180.24976 * 11 10 9 33 33 H 1.09004 * 109.68157 * 350.27959 * 16 15 13 34 34 H 1.08999 * 109.68227 * 110.83650 * 16 15 13 35 35 H 1.08998 * 109.58765 * 187.92050 * 17 16 15 36 36 H 1.09004 * 109.41448 * 67.83610 * 17 16 15 37 37 H 1.08999 * 109.51228 * 177.49509 * 19 18 17 38 38 H 1.09009 * 109.51271 * 57.34650 * 19 18 17 39 39 H 1.08001 * 119.94470 * 180.02562 * 28 12 11 40 40 H 1.08004 * 120.05298 * 180.02562 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0827 -1.2171 0.1036 9 6 1.3085 -2.4328 -0.1335 10 6 1.7747 -3.5905 0.5201 11 6 1.0925 -4.7638 0.3926 12 6 -0.0664 -4.8209 -0.3910 13 6 -0.8013 -6.0942 -0.5263 14 8 -0.2161 -7.1513 -0.3901 15 7 -2.1208 -6.0849 -0.8008 16 6 -2.8798 -4.8246 -0.8286 17 6 -4.1256 -4.9861 0.0425 18 8 -4.8326 -6.1626 -0.3576 19 6 -4.0948 -7.3751 -0.1871 20 6 -2.8462 -7.3354 -1.0754 21 1 -3.1409 -7.3660 -2.1245 22 6 -1.9620 -8.5146 -0.7614 23 7 -1.5195 -8.8767 0.4430 24 7 -0.7951 -9.9322 0.2855 25 7 -0.7733 -10.2358 -0.9659 26 1 -0.3000 -10.9883 -1.3541 27 7 -1.4860 -9.3835 -1.6191 28 6 -0.5306 -3.6741 -1.0466 29 6 0.1448 -2.4963 -0.9251 30 1 -0.4850 0.8401 0.0004 31 1 2.6686 -3.5475 1.1246 32 1 1.4468 -5.6510 0.8965 33 1 -2.2625 -4.0156 -0.4380 34 1 -3.1780 -4.5981 -1.8523 35 1 -4.7705 -4.1155 -0.0771 36 1 -3.8279 -5.0779 1.0871 37 1 -4.7174 -8.2232 -0.4719 38 1 -3.7961 -7.4759 0.8564 39 1 -1.4253 -3.7229 -1.6496 40 1 -0.2143 -1.6122 -1.4309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412435187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:33 Heat of formation + Delta-G solvation = 106.667048 kcal Electronic energy + Delta-G solvation = -28336.833777 eV Core-core repulsion = 24349.232660 eV Total energy + Delta-G solvation = -3987.601117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06207 -40.30143 -38.24256 -37.18726 -34.72930 -34.28145 -33.69654 -33.21830 -31.02326 -30.05571 -29.59224 -27.92016 -25.88928 -24.87168 -24.22097 -22.72042 -22.47211 -21.02338 -20.89944 -19.43027 -18.43029 -17.56263 -17.12274 -16.55541 -16.25115 -15.85137 -15.64180 -15.41424 -15.16284 -14.64116 -14.22946 -14.10034 -13.55280 -13.31156 -13.22018 -12.93785 -12.57610 -12.24932 -12.02694 -11.96825 -11.84228 -11.48015 -11.32937 -11.28965 -11.08184 -10.88065 -10.82720 -10.65644 -10.61057 -10.48205 -10.15391 -9.98137 -9.48931 -9.45093 -8.66920 -8.36173 -7.75516 -7.51831 -6.97880 -4.66766 1.53717 2.11678 2.39245 2.64022 2.89948 2.92851 2.94453 2.96804 3.24336 3.62693 3.69479 3.77001 4.08994 4.46708 4.50023 4.80056 5.01143 5.07990 5.25452 5.28903 5.42212 5.53613 5.63033 5.69618 5.82575 5.85222 5.93544 6.01539 6.05302 6.20565 6.59367 6.70153 6.76993 6.82121 6.93477 7.00679 7.04759 7.38356 7.47386 7.66803 7.79985 7.88917 8.02610 8.35378 8.59986 8.61458 8.67894 8.79016 9.94810 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019236 B = 0.003448 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.219275 B = 8117.640011 C = 9246.436948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.131 3.869 10 C -0.229 4.229 11 C -0.026 4.026 12 C -0.271 4.271 13 C 0.582 3.418 14 O -0.554 6.554 15 N -0.617 5.617 16 C 0.058 3.942 17 C 0.042 3.958 18 O -0.376 6.376 19 C 0.060 3.940 20 C 0.211 3.789 21 H 0.103 0.897 22 C 0.210 3.790 23 N -0.245 5.245 24 N -0.053 5.053 25 N -0.240 5.240 26 H 0.467 0.533 27 N -0.308 5.308 28 C -0.085 4.085 29 C -0.164 4.164 30 H 0.285 0.715 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 -8.909 -2.772 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.100 0.900 9 C 0.128 3.872 10 C -0.248 4.248 11 C -0.045 4.045 12 C -0.275 4.275 13 C 0.379 3.621 14 O -0.432 6.432 15 N -0.354 5.354 16 C -0.064 4.064 17 C -0.035 4.035 18 O -0.294 6.294 19 C -0.018 4.018 20 C 0.104 3.896 21 H 0.121 0.879 22 C -0.072 4.072 23 N -0.120 5.120 24 N -0.049 5.049 25 N -0.084 5.084 26 H 0.320 0.680 27 N -0.162 5.162 28 C -0.104 4.104 29 C -0.183 4.183 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.623 -9.600 -2.370 12.486 hybrid contribution 0.820 0.706 -0.479 1.183 sum -6.803 -8.894 -2.849 11.554 Atomic orbital electron populations 1.69665 1.07617 1.29878 1.34056 1.26014 0.94972 1.01566 0.92058 0.86209 0.80010 0.79515 0.80174 1.18674 1.20071 1.18778 1.19756 0.95472 0.90230 1.42416 0.89960 1.17817 0.91003 0.91995 0.86420 1.20817 1.03408 0.94000 1.06623 1.20314 0.92576 0.96546 0.95062 1.18795 1.02048 0.92125 1.14561 1.18724 0.79820 0.90017 0.73585 1.90614 1.67081 1.32875 1.52604 1.48067 1.08436 1.05531 1.73321 1.23213 0.94012 0.88027 1.01173 1.23099 0.93828 0.88256 0.98353 1.87953 1.40712 1.14341 1.86417 1.22892 0.91397 0.88135 0.99424 1.19776 0.89256 0.79628 1.00964 0.87893 1.24409 0.99190 0.97130 0.86505 1.75681 1.08597 1.04554 1.23171 1.78760 1.15300 1.10394 1.00428 1.47415 1.33936 1.22756 1.04326 0.68038 1.74472 1.12025 1.04232 1.25444 1.20985 0.98063 0.92757 0.98592 1.21053 0.98785 0.96455 1.01993 0.90339 0.88272 0.88441 0.84671 0.90672 0.87261 0.92132 0.87688 0.91184 0.87292 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.32 10.93 55.56 0.61 -17.71 16 2 C 0.07 1.67 5.30 -17.31 -0.09 1.58 16 3 Si 0.92 17.18 29.57 -169.99 -5.03 12.16 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.45 -11.00 9.04 -37.75 -0.34 -11.34 16 8 H 0.08 1.93 7.86 -52.49 -0.41 1.52 16 9 C 0.13 3.23 5.51 -106.80 -0.59 2.64 16 10 C -0.23 -5.42 9.73 -39.27 -0.38 -5.80 16 11 C -0.03 -0.59 9.52 -39.61 -0.38 -0.97 16 12 C -0.27 -5.96 5.56 -104.73 -0.58 -6.55 16 13 C 0.58 12.08 7.41 -12.42 -0.09 11.98 16 14 O -0.55 -12.58 12.26 5.29 0.06 -12.52 16 15 N -0.62 -10.39 3.03 -167.49 -0.51 -10.90 16 16 C 0.06 0.82 4.79 -3.75 -0.02 0.80 16 17 C 0.04 0.51 6.97 37.09 0.26 0.77 16 18 O -0.38 -4.84 10.74 -35.23 -0.38 -5.22 16 19 C 0.06 0.76 6.27 37.31 0.23 1.00 16 20 C 0.21 3.12 3.62 -68.58 -0.25 2.87 16 21 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 22 C 0.21 3.48 4.51 -156.62 -0.71 2.77 16 23 N -0.24 -4.43 10.58 32.44 0.34 -4.08 16 24 N -0.05 -0.86 13.46 60.35 0.81 -0.05 16 25 N -0.24 -3.18 7.91 60.34 0.48 -2.70 16 26 H 0.47 3.80 8.96 -340.53 -3.05 0.75 16 27 N -0.31 -4.74 12.36 32.46 0.40 -4.34 16 28 C -0.09 -1.79 7.39 -39.61 -0.29 -2.08 16 29 C -0.16 -3.82 8.57 -39.27 -0.34 -4.16 16 30 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 31 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 32 H 0.10 2.22 7.85 -52.48 -0.41 1.81 16 33 H 0.14 2.17 4.24 -51.93 -0.22 1.95 16 34 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.96 8.03 -51.92 -0.42 0.54 16 39 H 0.11 1.95 4.99 -52.49 -0.26 1.69 16 40 H 0.12 2.90 6.42 -52.48 -0.34 2.56 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -30.49 331.50 -8.54 -39.03 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.77 Total: 7.80 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.57 Total: -6.47 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 2.13 Total: -39.78 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.31 Total: -17.73 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.49 -8.54 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412435187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.698 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds