Wall clock time and date at job start Tue Mar 31 2020 05:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34770 * 119.99766 * 2 1 4 4 O 1.21352 * 119.99546 * 175.17884 * 3 2 1 5 5 C 1.49454 * 120.00389 * 355.46130 * 3 2 1 6 6 N 1.34769 * 119.99883 * 185.14716 * 5 3 2 7 7 O 1.21346 * 119.99725 * 5.13941 * 5 3 2 8 8 C 1.46494 * 119.99863 * 180.02562 * 2 1 3 9 9 H 1.08999 * 109.47343 * 184.75056 * 8 2 1 10 10 C 1.53002 * 109.47622 * 64.75038 * 8 2 1 11 11 N 1.46501 * 109.46993 * 54.99725 * 10 8 2 12 12 C 1.34775 * 120.00007 * 180.02562 * 11 10 8 13 13 O 1.21273 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99923 * 180.02562 * 12 11 10 15 15 S 1.81001 * 109.47276 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00079 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99991 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99734 * 179.97438 * 16 15 14 19 19 N 1.31630 * 120.00363 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47106 * 90.00118 * 20 18 16 22 22 H 1.48498 * 109.47168 * 209.99984 * 20 18 16 23 23 H 1.48498 * 109.47020 * 330.00459 * 20 18 16 24 24 C 1.53005 * 109.47249 * 304.74907 * 8 2 1 25 25 C 1.52994 * 117.49965 * 253.50961 * 24 8 2 26 26 C 1.52996 * 117.50054 * 184.85056 * 24 8 2 27 27 H 1.09003 * 109.47680 * 55.59632 * 1 2 3 28 28 H 1.09006 * 109.47041 * 175.60123 * 1 2 3 29 29 H 1.09000 * 109.46817 * 295.59675 * 1 2 3 30 30 H 0.96996 * 120.00564 * 359.97438 * 6 5 3 31 31 H 0.97004 * 119.99938 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47641 * 174.99695 * 10 8 2 33 33 H 1.09004 * 109.47105 * 295.00158 * 10 8 2 34 34 H 0.97003 * 119.99733 * 0.02562 * 11 10 8 35 35 H 1.08999 * 109.47268 * 299.99490 * 14 12 11 36 36 H 1.09004 * 109.46998 * 59.99693 * 14 12 11 37 37 H 0.97002 * 120.00174 * 179.97438 * 19 18 16 38 38 H 1.08998 * 115.54660 * 39.18277 * 24 8 2 39 39 H 1.09003 * 117.49813 * 0.02562 * 25 24 8 40 40 H 1.09000 * 117.49798 * 145.01584 * 25 24 8 41 41 H 1.09004 * 117.50088 * 214.98018 * 26 24 8 42 42 H 1.09004 * 117.49730 * 359.97438 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3491 1.1690 0.0883 5 6 1.3951 2.4595 -0.1024 6 7 2.0721 3.6201 -0.2070 7 8 0.1817 2.4636 -0.0916 8 6 2.1975 -1.2687 -0.0006 9 1 3.2661 -1.0714 0.0846 10 6 1.9197 -2.0175 -1.3056 11 7 2.2462 -1.1540 -2.4431 12 6 2.0791 -1.6058 -3.7018 13 8 1.6589 -2.7272 -3.8928 14 6 2.4155 -0.7177 -4.8720 15 16 2.0867 -1.6034 -6.4158 16 6 2.5542 -0.3686 -7.5826 17 1 2.9141 0.5901 -7.2393 18 6 2.4609 -0.6283 -8.9428 19 7 2.0227 -1.7969 -9.3613 20 14 2.9557 0.6810 -10.1798 21 1 4.3978 0.5362 -10.5037 22 1 2.1518 0.5212 -11.4181 23 1 2.7111 2.0265 -9.6009 24 6 1.7404 -2.1220 1.1843 25 6 2.7003 -2.2597 2.3677 26 6 2.4710 -3.4444 1.4260 27 1 -0.3634 0.5806 -0.8479 28 1 -0.3633 -1.0247 -0.0788 29 1 -0.3633 0.4440 0.9268 30 1 3.0420 3.6168 -0.2154 31 1 1.5894 4.4588 -0.2738 32 1 2.5325 -2.9181 -1.3454 33 1 0.8659 -2.2929 -1.3492 34 1 2.5826 -0.2571 -2.2903 35 1 1.8033 0.1832 -4.8322 36 1 3.4695 -0.4430 -4.8284 37 1 1.9571 -1.9782 -10.3119 38 1 0.6731 -2.0894 1.4031 39 1 3.6573 -1.7419 2.3023 40 1 2.2645 -2.3179 3.3651 41 1 1.8844 -4.2817 1.8043 42 1 3.2770 -3.7067 0.7406 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487676879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:20 Heat of formation + Delta-G solvation = -73.207217 kcal Electronic energy + Delta-G solvation = -25961.161304 eV Core-core repulsion = 22068.911453 eV Total energy + Delta-G solvation = -3892.249850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25921 -39.53350 -38.71207 -37.95944 -35.91466 -34.33610 -33.74731 -32.42532 -30.56840 -28.61192 -27.37116 -25.58978 -25.25469 -23.56689 -22.60362 -20.90387 -20.34835 -19.88447 -18.45845 -17.88024 -17.71093 -16.89332 -16.63611 -16.22537 -16.06262 -15.73452 -15.25283 -14.88647 -14.80203 -14.69375 -14.14795 -14.04483 -13.79458 -13.43711 -13.16147 -12.97814 -12.73969 -12.60136 -12.42271 -11.93099 -11.90183 -11.79616 -11.48127 -11.06020 -11.02173 -10.82385 -10.76834 -10.52647 -10.24842 -9.85012 -9.81540 -9.44442 -9.14269 -9.06888 -8.92486 -8.23799 -6.49622 -6.21358 -3.91838 1.05666 1.99382 2.82109 2.97256 3.08231 3.21267 3.22691 3.28671 3.32835 3.45548 3.69383 4.12791 4.20713 4.26622 4.42808 4.56231 4.75975 4.81823 4.85774 5.04170 5.13818 5.16830 5.31547 5.34764 5.45530 5.53238 5.56863 5.63584 5.71112 5.78147 5.83017 5.88382 5.94666 6.13864 6.16316 6.53586 6.55225 6.76902 7.33342 7.59844 7.63687 7.66168 8.35608 8.58251 9.23987 10.86071 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.003038 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.738186 B = 9215.769712 C =10680.743871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.575 5.575 3 C 0.503 3.497 4 O -0.520 6.520 5 C 0.513 3.487 6 N -0.822 5.822 7 O -0.513 6.513 8 C 0.157 3.843 9 H 0.112 0.888 10 C 0.115 3.885 11 N -0.737 5.737 12 C 0.533 3.467 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.166 4.166 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.414 0.586 31 H 0.412 0.588 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.395 0.605 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 6.165 25.685 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.308 5.308 3 C 0.286 3.714 4 O -0.397 6.397 5 C 0.292 3.708 6 N -0.389 5.389 7 O -0.388 6.388 8 C 0.053 3.947 9 H 0.130 0.870 10 C -0.010 4.010 11 N -0.391 5.391 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.187 4.187 25 C -0.209 4.209 26 C -0.204 4.204 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.244 0.756 31 H 0.244 0.756 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.732 3.970 25.272 25.592 hybrid contribution 1.125 2.981 -0.506 3.226 sum 0.393 6.951 24.766 25.726 Atomic orbital electron populations 1.22065 0.77218 1.02890 1.03830 1.47705 1.08494 1.04668 1.69901 1.20168 0.87517 0.85271 0.78482 1.90782 1.13310 1.87052 1.48519 1.20020 0.87544 0.85798 0.77474 1.43530 1.12464 1.08057 1.74810 1.90831 1.13268 1.87052 1.47686 1.21078 0.98295 0.81847 0.93435 0.87020 1.21599 1.02193 0.93636 0.83569 1.45926 1.69598 1.18225 1.05387 1.20288 0.76875 0.87747 0.83134 1.90700 1.43615 1.19772 1.84889 1.23532 1.04583 1.02716 0.99591 1.85369 1.85985 1.20792 0.90985 1.22869 1.50852 1.01776 0.92901 0.90957 1.24987 0.94763 0.96205 0.97602 1.70017 1.43272 1.21390 1.15608 0.86167 0.78584 0.80887 0.79859 1.20260 1.20742 1.19705 1.22447 0.99039 1.00051 0.97135 1.23038 1.00718 1.02310 0.94822 1.22997 1.03044 0.91437 1.02882 0.89963 0.90684 0.91209 0.75570 0.75580 0.89946 0.90848 0.77179 0.89390 0.89253 0.92181 0.86801 0.88462 0.88582 0.88112 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 8.05 59.85 0.48 1.19 16 2 N -0.57 -5.41 2.32 -174.43 -0.40 -5.82 16 3 C 0.50 5.20 7.13 -11.59 -0.08 5.11 16 4 O -0.52 -6.11 15.83 5.50 0.09 -6.02 16 5 C 0.51 4.95 8.07 -11.59 -0.09 4.85 16 6 N -0.82 -5.24 8.87 30.90 0.27 -4.96 16 7 O -0.51 -5.98 14.09 5.50 0.08 -5.90 16 8 C 0.16 1.43 2.32 -67.93 -0.16 1.28 16 9 H 0.11 1.13 6.71 -51.93 -0.35 0.78 16 10 C 0.12 1.32 4.87 -4.04 -0.02 1.30 16 11 N -0.74 -10.37 5.39 -60.29 -0.32 -10.69 16 12 C 0.53 10.14 7.85 -10.99 -0.09 10.05 16 13 O -0.52 -11.67 15.86 5.56 0.09 -11.59 16 14 C -0.15 -3.18 6.16 36.01 0.22 -2.96 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 16 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 20 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 C -0.17 -1.23 4.99 -90.62 -0.45 -1.68 16 25 C -0.17 -1.16 10.18 -26.70 -0.27 -1.43 16 26 C -0.17 -1.11 9.89 -26.70 -0.26 -1.37 16 27 H 0.08 0.85 6.79 -51.93 -0.35 0.49 16 28 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 29 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 30 H 0.41 2.14 8.31 -40.82 -0.34 1.80 16 31 H 0.41 1.87 8.93 -40.82 -0.36 1.50 16 32 H 0.08 0.97 7.81 -51.93 -0.41 0.57 16 33 H 0.07 0.87 7.38 -51.93 -0.38 0.49 16 34 H 0.39 5.06 7.61 -40.82 -0.31 4.75 16 35 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 36 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.11 0.76 6.95 -51.93 -0.36 0.40 16 39 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.70 7.97 -51.93 -0.41 0.28 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -36.08 370.74 -7.30 -43.38 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.66 Total: 5.57 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -0.53 Total: 3.27 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.28 Total: -47.00 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.25 Total: -23.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.08 -7.30 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487676879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.825 kcal (2) G-P(sol) polarization free energy of solvation -36.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds