Wall clock time and date at job start Tue Mar 31 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00162 * 2 1 4 4 O 1.21353 * 120.00220 * 183.22667 * 3 2 1 5 5 C 1.49453 * 120.00202 * 3.22143 * 3 2 1 6 6 N 1.34774 * 120.00382 * 184.39190 * 5 3 2 7 7 O 1.21350 * 119.99431 * 4.38593 * 5 3 2 8 8 C 1.46502 * 120.00205 * 179.97438 * 2 1 3 9 9 H 1.08994 * 109.47404 * 180.02562 * 8 2 1 10 10 C 1.52998 * 109.47169 * 300.00442 * 8 2 1 11 11 N 1.46500 * 109.47078 * 304.99670 * 10 8 2 12 12 C 1.34774 * 119.99958 * 180.02562 * 11 10 8 13 13 O 1.21274 * 120.00342 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99984 * 180.02562 * 12 11 10 15 15 S 1.81002 * 109.47337 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99994 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00353 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99996 * 179.97438 * 16 15 14 19 19 N 1.31629 * 119.99946 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46817 * 90.00322 * 20 18 16 22 22 H 1.48497 * 109.47104 * 209.99917 * 20 18 16 23 23 H 1.48493 * 109.47099 * 330.00403 * 20 18 16 24 24 C 1.53003 * 109.46819 * 59.99969 * 8 2 1 25 25 C 1.53001 * 117.49851 * 128.74780 * 24 8 2 26 26 C 1.52998 * 117.49644 * 60.08804 * 24 8 2 27 27 H 1.08999 * 109.46975 * 83.91166 * 1 2 3 28 28 H 1.08997 * 109.47214 * 203.91959 * 1 2 3 29 29 H 1.09003 * 109.47081 * 323.91420 * 1 2 3 30 30 H 0.97001 * 119.99936 * 0.02562 * 6 5 3 31 31 H 0.96994 * 120.00410 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.47301 * 64.99683 * 10 8 2 33 33 H 1.08996 * 109.47553 * 184.99732 * 10 8 2 34 34 H 0.97001 * 119.99860 * 0.02562 * 11 10 8 35 35 H 1.09007 * 109.46847 * 299.99686 * 14 12 11 36 36 H 1.08995 * 109.47506 * 59.99469 * 14 12 11 37 37 H 0.97000 * 120.00258 * 179.97438 * 19 18 16 38 38 H 1.09004 * 115.55350 * 274.41971 * 24 8 2 39 39 H 1.09007 * 117.49496 * 0.02562 * 25 24 8 40 40 H 1.08995 * 117.49901 * 145.02091 * 25 24 8 41 41 H 1.09006 * 117.50106 * 214.97432 * 26 24 8 42 42 H 1.08997 * 117.49975 * 0.02562 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3509 1.1680 -0.0592 5 6 1.3934 2.4605 0.0727 6 7 2.0600 3.6285 -0.0164 7 8 0.1879 2.4589 0.2119 8 6 2.1975 -1.2687 0.0006 9 1 3.2691 -1.0696 0.0009 10 6 1.8278 -2.0705 1.2501 11 7 2.0706 -1.2554 2.4429 12 6 1.8153 -1.7590 3.6667 13 8 1.3841 -2.8868 3.7805 14 6 2.0644 -0.9202 4.8937 15 16 1.6273 -1.8688 6.3720 16 6 2.0066 -0.6835 7.6193 17 1 2.3881 0.2883 7.3427 18 6 1.8151 -0.9987 8.9574 19 7 1.3496 -2.1829 9.2945 20 14 2.2179 0.2576 10.2799 21 1 1.0165 1.0844 10.5594 22 1 2.6345 -0.4453 11.5198 23 1 3.3227 1.1323 9.8116 24 6 1.8279 -2.0715 -1.2484 25 6 2.9740 -2.6068 -2.1090 26 6 2.1227 -1.4369 -2.6089 27 1 -0.3633 0.1090 -1.0219 28 1 -0.3633 -0.9394 0.4167 29 1 -0.3633 0.8305 0.6053 30 1 3.0235 3.6297 -0.1281 31 1 1.5762 4.4678 0.0304 32 1 0.7740 -2.3460 1.2065 33 1 2.4375 -2.9728 1.2964 34 1 2.4151 -0.3532 2.3519 35 1 3.1180 -0.6441 4.9372 36 1 1.4541 -0.0184 4.8475 37 1 1.2161 -2.4034 10.2296 38 1 0.9322 -2.6871 -1.1636 39 1 3.9915 -2.3873 -1.7851 40 1 2.8324 -3.5742 -2.5907 41 1 1.4214 -1.6353 -3.4195 42 1 2.5804 -0.4477 -2.6143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487676880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:24 Heat of formation + Delta-G solvation = -66.743565 kcal Electronic energy + Delta-G solvation = -25983.574773 eV Core-core repulsion = 22091.605208 eV Total energy + Delta-G solvation = -3891.969565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30179 -39.53248 -38.74969 -37.90106 -35.86513 -34.38676 -33.72878 -32.41844 -30.65410 -28.62513 -27.31999 -25.57025 -25.26701 -23.31705 -22.70020 -21.11680 -20.35808 -19.87371 -18.40256 -17.90776 -17.63944 -16.93992 -16.61551 -16.14090 -16.09301 -15.78424 -15.32884 -14.99738 -14.79618 -14.66910 -14.19781 -14.18808 -13.79199 -13.37206 -13.12066 -12.92632 -12.79911 -12.59837 -12.31869 -11.93675 -11.86594 -11.60365 -11.46232 -11.05372 -11.01467 -10.78003 -10.74810 -10.68704 -10.30047 -9.81337 -9.72732 -9.43433 -9.10684 -9.06182 -8.91803 -8.23011 -6.48832 -6.20684 -3.91067 1.03207 1.98284 2.80893 2.98542 3.09035 3.20362 3.23252 3.28943 3.33205 3.54355 3.68103 4.07512 4.20794 4.21665 4.43020 4.58880 4.71982 4.86877 4.97550 5.04263 5.14497 5.17525 5.29288 5.38242 5.47312 5.53940 5.54609 5.69881 5.75717 5.77057 5.82467 5.89208 5.92615 6.15144 6.25310 6.51436 6.55607 6.79013 7.34295 7.60605 7.62771 7.66320 8.36351 8.58990 9.24691 10.86763 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.002936 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.699230 B = 9533.436798 C =10842.076368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.570 5.570 3 C 0.502 3.498 4 O -0.522 6.522 5 C 0.515 3.485 6 N -0.822 5.822 7 O -0.511 6.511 8 C 0.155 3.845 9 H 0.112 0.888 10 C 0.116 3.884 11 N -0.736 5.736 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.166 4.166 25 C -0.166 4.166 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.414 0.586 31 H 0.412 0.588 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.395 0.605 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.894 7.915 -26.230 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.303 5.303 3 C 0.284 3.716 4 O -0.399 6.399 5 C 0.294 3.706 6 N -0.388 5.388 7 O -0.386 6.386 8 C 0.052 3.948 9 H 0.130 0.870 10 C -0.009 4.009 11 N -0.391 5.391 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.185 4.185 25 C -0.203 4.203 26 C -0.204 4.204 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.244 0.756 31 H 0.244 0.756 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.977 5.691 -25.822 26.460 hybrid contribution 1.083 2.883 0.590 3.135 sum 2.059 8.574 -25.232 26.729 Atomic orbital electron populations 1.22571 0.77232 1.05561 1.03417 1.47766 1.08595 1.04506 1.69408 1.20116 0.87538 0.85307 0.78619 1.90783 1.13159 1.87093 1.48873 1.20094 0.87399 0.85912 0.77222 1.43555 1.13322 1.07582 1.74293 1.90706 1.13858 1.86693 1.47392 1.21103 0.98398 0.82043 0.93285 0.87014 1.21584 1.02341 0.94148 0.82828 1.45910 1.69453 1.18300 1.05411 1.20286 0.76667 0.87397 0.83655 1.90701 1.43238 1.18958 1.86137 1.23531 1.04941 1.03300 0.98646 1.85364 1.85383 1.20347 0.92053 1.22871 1.50743 1.01966 0.92798 0.90958 1.24988 0.94668 0.95993 0.97913 1.70016 1.42272 1.19857 1.18156 0.86167 0.78743 0.80440 0.80152 1.20271 1.20743 1.19698 1.22474 1.01537 1.03476 0.91050 1.23036 0.95939 0.98557 1.02767 1.22865 1.03389 0.97952 0.96243 0.92227 0.90912 0.86624 0.75574 0.75576 0.90848 0.89828 0.77109 0.89264 0.89342 0.92188 0.86753 0.88340 0.88213 0.88552 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 9.05 59.84 0.54 1.02 16 2 N -0.57 -5.29 2.12 -174.44 -0.37 -5.66 16 3 C 0.50 5.04 7.44 -11.58 -0.09 4.95 16 4 O -0.52 -5.99 15.82 5.49 0.09 -5.90 16 5 C 0.51 4.78 8.07 -11.58 -0.09 4.69 16 6 N -0.82 -4.85 8.87 30.91 0.27 -4.58 16 7 O -0.51 -5.81 13.91 5.50 0.08 -5.74 16 8 C 0.15 1.41 2.37 -67.93 -0.16 1.25 16 9 H 0.11 1.13 6.66 -51.93 -0.35 0.78 16 10 C 0.12 1.33 4.92 -4.04 -0.02 1.31 16 11 N -0.74 -10.32 5.39 -60.29 -0.32 -10.64 16 12 C 0.53 10.14 7.85 -10.98 -0.09 10.06 16 13 O -0.52 -11.69 15.86 5.56 0.09 -11.61 16 14 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 15 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 16 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 17 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 18 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 C -0.17 -1.22 4.83 -90.62 -0.44 -1.66 16 25 C -0.17 -1.10 10.18 -26.69 -0.27 -1.38 16 26 C -0.17 -1.15 10.13 -26.69 -0.27 -1.42 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 29 H 0.12 1.22 5.10 -52.41 -0.27 0.95 16 30 H 0.41 1.93 8.31 -40.82 -0.34 1.60 16 31 H 0.41 1.68 8.93 -40.82 -0.36 1.31 16 32 H 0.07 0.86 6.87 -51.93 -0.36 0.50 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 5.04 7.87 -40.82 -0.32 4.72 16 35 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 36 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.11 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.10 0.68 8.05 -51.93 -0.42 0.26 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -35.93 372.16 -7.21 -43.14 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.68 Total: 5.49 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.47 Total: 2.73 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.31 Total: -46.48 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.25 Total: -23.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.93 -7.21 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487676880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.606 kcal (2) G-P(sol) polarization free energy of solvation -35.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds