Wall clock time and date at job start Tue Mar 31 2020 04:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99446 * 180.02562 * 4 2 1 6 6 C 1.50704 * 109.46716 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00014 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00306 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.88151 * 31.11143 * 9 8 6 11 11 C 1.55147 * 111.00781 * 154.99442 * 9 8 6 12 12 C 1.54330 * 102.94371 * 153.57627 * 11 9 8 13 13 N 1.47018 * 107.26723 * 337.80968 * 12 11 9 14 14 C 1.34783 * 125.64636 * 178.96047 * 13 12 11 15 15 O 1.21280 * 120.00122 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99689 * 359.97340 * 14 13 12 17 17 S 1.80998 * 109.46622 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99881 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00293 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00000 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47511 * 59.99098 * 22 20 18 24 24 H 1.48500 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47065 * 299.99025 * 22 20 18 26 26 C 1.47422 * 108.70875 * 358.93878 * 13 12 11 27 27 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 30 30 H 0.96998 * 120.00302 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47188 * 299.98994 * 5 4 2 32 32 H 1.09000 * 109.47702 * 59.99917 * 5 4 2 33 33 H 0.97005 * 120.00384 * 359.97438 * 8 6 5 34 34 H 1.08998 * 110.72298 * 271.94148 * 11 9 8 35 35 H 1.09003 * 110.71882 * 35.03877 * 11 9 8 36 36 H 1.08998 * 109.87787 * 97.22495 * 12 11 9 37 37 H 1.08999 * 109.88323 * 218.39294 * 12 11 9 38 38 H 1.08997 * 109.46739 * 299.99792 * 16 14 13 39 39 H 1.08993 * 109.46969 * 60.00201 * 16 14 13 40 40 H 0.97002 * 120.00086 * 180.02562 * 21 20 18 41 41 H 1.09003 * 110.36902 * 265.29325 * 26 13 12 42 42 H 1.08995 * 110.36980 * 142.96803 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 8 3.3601 -3.5099 -0.0001 8 7 5.4732 -2.8343 0.0009 9 6 5.9617 -4.2156 0.0014 10 1 5.2695 -4.8726 -0.5253 11 6 7.3850 -4.3024 -0.6098 12 6 7.9749 -5.5587 0.0650 13 7 7.2200 -5.7824 1.3066 14 6 7.4169 -6.7950 2.1740 15 8 6.7322 -6.8811 3.1712 16 6 8.4880 -7.8204 1.9045 17 16 8.5039 -9.0414 3.2405 18 6 9.8098 -10.0858 2.6850 19 1 10.3236 -9.8631 1.7615 20 6 10.1775 -11.1952 3.4336 21 7 9.5509 -11.4669 4.5589 22 14 11.5623 -12.3020 2.8450 23 1 12.8149 -11.5119 2.7354 24 1 11.7587 -13.4082 3.8160 25 1 11.2147 -12.8655 1.5158 26 6 6.2124 -4.7154 1.4460 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5138 30 1 1.6959 -2.0073 -0.0005 31 1 4.0095 -0.6529 -0.8895 32 1 4.0089 -0.6539 0.8905 33 1 6.1036 -2.0970 0.0013 34 1 7.3333 -4.4335 -1.6907 35 1 7.9677 -3.4163 -0.3577 36 1 7.8665 -6.4194 -0.5950 37 1 9.0278 -5.3960 0.2955 38 1 8.2824 -8.3205 0.9582 39 1 9.4583 -7.3268 1.8514 40 1 9.8081 -12.2420 5.0823 41 1 6.5997 -3.9063 2.0654 42 1 5.2932 -5.1152 1.8741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493198321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:45 Heat of formation + Delta-G solvation = -105.238220 kcal Electronic energy + Delta-G solvation = -24587.019774 eV Core-core repulsion = 20693.380955 eV Total energy + Delta-G solvation = -3893.638819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83140 -39.96145 -39.26748 -37.39527 -34.94904 -34.63889 -32.44550 -31.49135 -30.72498 -29.76886 -28.47429 -26.93302 -25.49435 -23.58493 -21.74689 -21.16216 -21.06326 -19.44457 -18.28557 -17.73429 -17.33211 -16.74460 -16.57908 -16.43247 -16.25916 -15.44257 -15.20606 -14.98511 -14.81698 -14.36590 -14.15964 -13.86156 -13.73235 -13.58014 -13.49859 -13.04924 -13.00476 -12.72339 -12.57485 -12.47713 -12.11800 -11.99029 -11.81021 -11.23291 -11.06056 -11.05116 -10.79262 -10.52796 -10.44205 -9.86433 -9.77037 -9.65291 -9.43769 -9.07455 -8.59724 -8.26087 -6.52469 -6.22901 -3.94154 1.98247 2.16621 2.20079 2.79642 2.99355 3.04524 3.22245 3.24977 3.28187 3.57952 3.95236 4.14539 4.19156 4.27415 4.39581 4.55807 4.73919 4.74729 4.84459 4.86271 4.95256 4.98032 5.01583 5.12097 5.32089 5.36571 5.42813 5.53440 5.55803 5.61201 5.72644 5.78552 5.88332 5.90398 6.09943 6.32126 6.85093 6.99253 7.55737 7.57307 7.58427 7.71151 8.33309 8.49180 9.22034 10.84460 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.036501 B = 0.001798 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.911648 B =15571.373789 C =16053.182500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.514 3.486 3 O -0.550 6.550 4 N -0.720 5.720 5 C 0.099 3.901 6 C 0.511 3.489 7 O -0.530 6.530 8 N -0.714 5.714 9 C 0.131 3.869 10 H 0.111 0.889 11 C -0.136 4.136 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.549 3.451 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.099 3.901 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.414 0.586 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.406 0.594 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.068 0.932 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.688 22.628 -14.628 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.427 6.427 4 N -0.377 5.377 5 C -0.029 4.029 6 C 0.296 3.704 7 O -0.406 6.406 8 N -0.366 5.366 9 C 0.025 3.975 10 H 0.129 0.871 11 C -0.175 4.175 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.338 3.662 15 O -0.386 6.386 16 C -0.297 4.297 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.026 4.026 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.252 0.748 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.242 0.758 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.851 22.367 -12.919 28.419 hybrid contribution 1.932 -0.678 -1.533 2.558 sum -9.919 21.689 -14.451 27.886 Atomic orbital electron populations 1.21873 0.90951 1.05145 1.05155 1.20869 0.90869 0.82920 0.75191 1.90737 1.70827 1.31413 1.49742 1.45848 1.05838 1.10167 1.75845 1.21052 0.82785 0.93937 1.05108 1.20570 0.82769 0.91205 0.75811 1.90753 1.55010 1.45880 1.48909 1.45730 1.06850 1.08656 1.75355 1.22174 0.95959 0.82942 0.96416 0.87144 1.22931 0.94630 0.98735 1.01174 1.21965 0.96545 0.97456 0.86021 1.48397 1.36923 1.27230 1.23920 1.20071 0.84335 0.80096 0.81705 1.90722 1.47402 1.73831 1.26600 1.23507 0.98961 1.00141 1.07095 1.85431 1.47678 1.24615 1.25617 1.22815 1.20945 1.13322 1.11395 0.90954 1.24990 0.97076 0.96875 0.94594 1.70008 1.39891 1.27292 1.13040 0.86218 0.81204 0.79476 0.78559 1.19942 1.20791 1.19931 1.22462 0.93443 0.90620 0.96083 0.88524 0.89877 0.88639 0.74781 0.88142 0.88086 0.75837 0.89106 0.89776 0.90728 0.90675 0.89192 0.89223 0.92097 0.91426 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.30 36.01 0.37 -0.33 16 2 C 0.51 3.98 7.94 -10.98 -0.09 3.89 16 3 O -0.55 -6.43 17.10 5.56 0.10 -6.33 16 4 N -0.72 -4.90 5.53 -61.47 -0.34 -5.24 16 5 C 0.10 0.59 6.15 -5.19 -0.03 0.56 16 6 C 0.51 3.87 7.90 -10.98 -0.09 3.78 16 7 O -0.53 -6.02 15.31 5.56 0.09 -5.93 16 8 N -0.71 -4.11 5.20 -51.73 -0.27 -4.37 16 9 C 0.13 1.05 3.42 -65.78 -0.23 0.82 16 10 H 0.11 1.07 7.54 -51.93 -0.39 0.68 16 11 C -0.14 -0.79 6.60 -24.90 -0.16 -0.96 16 12 C 0.10 0.96 6.49 -3.06 -0.02 0.94 16 13 N -0.63 -8.66 3.33 -170.52 -0.57 -9.23 16 14 C 0.55 10.54 7.87 -10.98 -0.09 10.45 16 15 O -0.51 -12.00 16.12 5.56 0.09 -11.91 16 16 C -0.15 -2.96 5.35 36.01 0.19 -2.77 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.10 1.16 6.60 -2.53 -0.02 1.14 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.41 2.63 7.44 -40.82 -0.30 2.33 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.41 1.10 8.57 -40.82 -0.35 0.75 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.35 8.00 -51.93 -0.42 -0.07 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.20 8.04 -51.93 -0.42 0.79 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -39.26 376.11 -7.77 -47.03 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.07 Total: -1.33 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 0.04 Total: 4.63 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.44 Total: -44.21 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.27 Total: -24.17 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.26 -7.77 -47.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493198321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.206 kcal (2) G-P(sol) polarization free energy of solvation -39.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds