Wall clock time and date at job start Tue Mar 31 2020 04:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99446 * 180.02562 * 4 2 1 6 6 C 1.50704 * 109.46716 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00014 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00306 * 179.97438 * 8 6 5 10 10 H 1.09005 * 110.88151 * 31.11143 * 9 8 6 11 11 C 1.55147 * 111.00781 * 154.99442 * 9 8 6 12 12 C 1.54330 * 102.94371 * 153.57627 * 11 9 8 13 13 N 1.47018 * 107.26723 * 337.80968 * 12 11 9 14 14 C 1.34783 * 125.64636 * 178.96047 * 13 12 11 15 15 O 1.21280 * 120.00122 * 179.97438 * 14 13 12 16 16 C 1.50706 * 119.99689 * 359.97340 * 14 13 12 17 17 S 1.80998 * 109.46622 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99881 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99803 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00293 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00000 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00181 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47511 * 59.99098 * 22 20 18 24 24 H 1.48500 * 109.47346 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47065 * 299.99025 * 22 20 18 26 26 C 1.47422 * 108.70875 * 358.93878 * 13 12 11 27 27 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 30 30 H 0.96998 * 120.00302 * 359.97438 * 4 2 1 31 31 H 1.08997 * 109.47188 * 299.98994 * 5 4 2 32 32 H 1.09000 * 109.47702 * 59.99917 * 5 4 2 33 33 H 0.97005 * 120.00384 * 359.97438 * 8 6 5 34 34 H 1.08998 * 110.72298 * 271.94148 * 11 9 8 35 35 H 1.09003 * 110.71882 * 35.03877 * 11 9 8 36 36 H 1.08998 * 109.87787 * 97.22495 * 12 11 9 37 37 H 1.08999 * 109.88323 * 218.39294 * 12 11 9 38 38 H 1.08997 * 109.46739 * 299.99792 * 16 14 13 39 39 H 1.08993 * 109.46969 * 60.00201 * 16 14 13 40 40 H 0.97002 * 120.00086 * 180.02562 * 21 20 18 41 41 H 1.09003 * 110.36902 * 265.29325 * 26 13 12 42 42 H 1.08995 * 110.36980 * 142.96803 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1482 -2.5880 -0.0001 7 8 3.3601 -3.5099 -0.0001 8 7 5.4732 -2.8343 0.0009 9 6 5.9617 -4.2156 0.0014 10 1 5.2695 -4.8726 -0.5253 11 6 7.3850 -4.3024 -0.6098 12 6 7.9749 -5.5587 0.0650 13 7 7.2200 -5.7824 1.3066 14 6 7.4169 -6.7950 2.1740 15 8 6.7322 -6.8811 3.1712 16 6 8.4880 -7.8204 1.9045 17 16 8.5039 -9.0414 3.2405 18 6 9.8098 -10.0858 2.6850 19 1 10.3236 -9.8631 1.7615 20 6 10.1775 -11.1952 3.4336 21 7 9.5509 -11.4669 4.5589 22 14 11.5623 -12.3020 2.8450 23 1 12.8149 -11.5119 2.7354 24 1 11.7587 -13.4082 3.8160 25 1 11.2147 -12.8655 1.5158 26 6 6.2124 -4.7154 1.4460 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5138 30 1 1.6959 -2.0073 -0.0005 31 1 4.0095 -0.6529 -0.8895 32 1 4.0089 -0.6539 0.8905 33 1 6.1036 -2.0970 0.0013 34 1 7.3333 -4.4335 -1.6907 35 1 7.9677 -3.4163 -0.3577 36 1 7.8665 -6.4194 -0.5950 37 1 9.0278 -5.3960 0.2955 38 1 8.2824 -8.3205 0.9582 39 1 9.4583 -7.3268 1.8514 40 1 9.8081 -12.2420 5.0823 41 1 6.5997 -3.9063 2.0654 42 1 5.2932 -5.1152 1.8741 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493198321.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:44 Heat of formation + Delta-G solvation = -137.540633 kcal Electronic energy + Delta-G solvation = -24588.420511 eV Core-core repulsion = 20693.380955 eV Total energy + Delta-G solvation = -3895.039557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56859 -40.90007 -40.13112 -38.52552 -35.63731 -35.41579 -34.59074 -32.46946 -31.32029 -30.87021 -29.40183 -27.80258 -27.48690 -24.56970 -22.41977 -21.82424 -21.63041 -20.76385 -19.66444 -18.79010 -18.21696 -17.92806 -17.37744 -17.04090 -17.00176 -16.88559 -16.60733 -16.20136 -15.90874 -15.65787 -15.33395 -14.84718 -14.56049 -14.40440 -14.31206 -14.14989 -13.91745 -13.78785 -13.42607 -13.32083 -13.17089 -12.93720 -12.86345 -12.82311 -12.64657 -12.62627 -11.87111 -11.76673 -11.22817 -11.13010 -11.09750 -11.04974 -10.40208 -10.29609 -10.22543 -9.74883 -8.69591 -8.34757 -6.14246 1.18859 1.36131 1.43441 1.44474 1.50857 1.53947 1.58783 1.68490 2.09258 2.27060 2.46805 2.99413 3.19206 3.37254 3.48171 3.59865 3.87295 3.94460 3.96595 4.17314 4.21276 4.29312 4.30585 4.34718 4.43111 4.53418 4.59805 4.66713 4.73045 4.76822 4.93417 5.05776 5.06663 5.19861 5.26714 5.39144 5.40982 6.19088 6.30639 6.34899 6.44891 7.03064 7.05688 7.06295 7.14736 8.74313 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.036501 B = 0.001798 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.911648 B =15571.373789 C =16053.182500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.510 3.490 3 O -0.594 6.594 4 N -0.719 5.719 5 C 0.100 3.900 6 C 0.514 3.486 7 O -0.571 6.571 8 N -0.696 5.696 9 C 0.142 3.858 10 H 0.094 0.906 11 C -0.116 4.116 12 C 0.089 3.911 13 N -0.616 5.616 14 C 0.545 3.455 15 O -0.570 6.570 16 C -0.118 4.118 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.085 0.915 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.261 1.261 26 C 0.094 3.906 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.417 0.583 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.425 0.575 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.079 0.921 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 23.988 -17.532 31.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.300 3.700 3 O -0.475 6.475 4 N -0.375 5.375 5 C -0.027 4.027 6 C 0.300 3.700 7 O -0.450 6.450 8 N -0.349 5.349 9 C 0.035 3.965 10 H 0.112 0.888 11 C -0.154 4.154 12 C -0.033 4.033 13 N -0.352 5.352 14 C 0.333 3.667 15 O -0.448 6.448 16 C -0.269 4.269 17 S 0.072 5.928 18 C -0.694 4.694 19 H 0.103 0.897 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.186 1.186 26 C -0.031 4.031 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.255 0.745 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.264 0.736 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.286 23.782 -15.887 30.394 hybrid contribution 1.396 -0.992 -0.680 1.842 sum -8.890 22.790 -16.568 29.545 Atomic orbital electron populations 1.21913 0.88255 1.06264 1.06232 1.21484 0.92226 0.82270 0.74059 1.90713 1.71941 1.32805 1.52049 1.45932 1.06343 1.10136 1.75072 1.21138 0.82506 0.92777 1.06270 1.20846 0.82926 0.91348 0.74837 1.90747 1.56165 1.47170 1.50868 1.45545 1.06707 1.08407 1.74280 1.21910 0.97392 0.83622 0.93526 0.88785 1.22940 0.92322 0.98028 1.02145 1.22426 0.97088 0.99708 0.84090 1.48300 1.37072 1.25691 1.24112 1.19874 0.83784 0.81093 0.81924 1.90697 1.49352 1.75493 1.29279 1.23291 1.00675 0.98569 1.04349 1.85657 1.48600 1.27965 1.30622 1.23166 1.20809 1.13568 1.11857 0.89672 1.26157 0.99948 0.98546 0.94518 1.70187 1.41923 1.28084 1.14642 0.84978 0.77524 0.77048 0.78282 1.18493 1.20497 1.18588 1.22625 0.91457 0.90006 0.98971 0.87351 0.87914 0.88367 0.74481 0.86483 0.87275 0.73560 0.86363 0.86896 0.89984 0.89117 0.87325 0.87045 0.91993 0.90272 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.30 71.24 0.73 -0.41 16 2 C 0.51 7.48 7.94 87.66 0.70 8.18 16 3 O -0.59 -13.64 17.10 -3.02 -0.05 -13.69 16 4 N -0.72 -9.10 5.53 -466.78 -2.58 -11.68 16 5 C 0.10 1.04 6.15 85.63 0.53 1.57 16 6 C 0.51 7.06 7.90 87.66 0.69 7.75 16 7 O -0.57 -12.81 15.31 -3.03 -0.05 -12.85 16 8 N -0.70 -6.23 5.20 -435.96 -2.27 -8.50 16 9 C 0.14 1.96 3.42 46.38 0.16 2.12 16 10 H 0.09 1.70 7.54 -2.38 -0.02 1.69 16 11 C -0.12 -0.84 6.60 31.78 0.21 -0.63 16 12 C 0.09 1.35 6.49 86.73 0.56 1.91 16 13 N -0.62 -16.40 3.33 -811.78 -2.70 -19.10 16 14 C 0.54 21.16 7.87 87.66 0.69 21.85 16 15 O -0.57 -28.05 16.12 -3.03 -0.05 -28.10 16 16 C -0.12 -4.72 5.35 71.24 0.38 -4.34 16 17 S -0.16 -8.75 20.57 -56.49 -1.16 -9.91 16 18 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 19 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 22 Si 1.00 43.21 29.55 68.60 2.03 45.23 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 26 C 0.09 2.14 6.60 86.86 0.57 2.72 16 27 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.42 5.00 7.44 -92.71 -0.69 4.31 16 31 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.43 0.70 8.57 -92.70 -0.79 -0.09 16 34 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.11 0.26 8.00 -2.39 -0.02 0.24 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 39 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.05 1.45 8.04 -2.39 -0.02 1.43 16 Total: -1.00 -91.27 376.11 -0.63 -91.90 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.43 Total: 11.14 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.34 Total: 11.48 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -7.26 Total: -95.21 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.15 Total: -54.64 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -91.27 -0.63 -91.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493198321.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.636 kcal (2) G-P(sol) polarization free energy of solvation -91.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds