Wall clock time and date at job start Tue Mar 31 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00155 * 2 1 4 4 H 1.48494 * 109.47389 * 240.00161 * 3 2 1 5 5 H 1.48507 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 119.99593 * 3 2 1 7 7 C 1.37882 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47014 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.46691 * 180.02562 * 11 10 9 13 13 O 1.42105 * 110.54543 * 68.37587 * 12 11 10 14 14 O 1.42104 * 110.54458 * 291.62120 * 12 11 10 15 15 N 1.65609 * 104.44618 * 179.97438 * 12 11 10 16 16 C 1.46499 * 119.99631 * 65.00061 * 15 12 11 17 17 C 1.50706 * 109.46696 * 164.99951 * 16 15 12 18 18 C 1.35353 * 126.75076 * 94.99878 * 17 16 15 19 19 N 1.35309 * 106.17498 * 179.97438 * 18 17 16 20 20 C 1.46499 * 125.87027 * 179.97438 * 19 18 17 21 21 C 1.53934 * 113.72977 * 11.75486 * 20 19 18 22 22 N 1.47963 * 86.18156 * 221.91819 * 21 20 19 23 23 C 1.47966 * 90.75899 * 24.68940 * 22 21 20 24 24 N 1.28714 * 108.26535 * 359.97438 * 19 18 17 25 25 N 1.28637 * 110.18046 * 0.02562 * 24 19 18 26 26 H 0.97004 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46814 * 59.99816 * 9 7 2 28 28 H 1.09004 * 109.46641 * 300.00052 * 9 7 2 29 29 H 1.09002 * 109.46981 * 59.99882 * 10 9 7 30 30 H 1.08998 * 109.46948 * 299.99919 * 10 9 7 31 31 H 1.08991 * 109.46952 * 59.99936 * 11 10 9 32 32 H 1.08996 * 109.46688 * 299.99892 * 11 10 9 33 33 H 0.97001 * 120.00059 * 244.99948 * 15 12 11 34 34 H 1.08998 * 109.47538 * 45.00164 * 16 15 12 35 35 H 1.08994 * 109.47049 * 284.99665 * 16 15 12 36 36 H 1.08002 * 126.91189 * 359.97438 * 18 17 16 37 37 H 1.09009 * 112.93761 * 143.45526 * 20 19 18 38 38 H 1.08999 * 113.76278 * 336.23458 * 21 20 19 39 39 H 1.09007 * 113.75983 * 107.60728 * 21 20 19 40 40 H 1.00902 * 111.00211 * 271.79928 * 22 21 20 41 41 H 1.09002 * 113.75474 * 220.99269 * 23 22 21 42 42 H 1.08998 * 113.75967 * 89.62839 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 16 2.6592 -6.3658 0.0007 13 8 3.3551 -6.4262 1.2382 14 8 3.3568 -6.4261 -1.2359 15 7 1.7088 -7.7220 0.0006 16 6 0.8498 -8.0144 -1.1496 17 6 0.3834 -9.4456 -1.0772 18 6 -0.7810 -9.8923 -0.5513 19 7 -0.7726 -11.2367 -0.7045 20 6 -1.8325 -12.1555 -0.2820 21 6 -3.1398 -11.4497 0.1212 22 7 -3.1948 -12.4092 1.2462 23 6 -1.7269 -12.5875 1.1917 24 7 0.3267 -11.5696 -1.2853 25 7 1.0384 -10.5243 -1.5209 26 1 -0.4850 0.8401 -0.0004 27 1 0.6248 -2.5570 -0.8897 28 1 0.6241 -2.5566 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8540 -5.0445 -0.8902 32 1 0.8534 -5.0450 0.8896 33 1 1.7209 -8.3228 0.7621 34 1 1.4117 -7.8615 -2.0710 35 1 -0.0139 -7.3497 -1.1362 36 1 -1.5601 -9.2958 -0.1001 37 1 -1.9756 -12.9859 -0.9735 38 1 -3.0018 -10.4145 0.4332 39 1 -3.9466 -11.5735 -0.6013 40 1 -3.6722 -13.2561 0.9762 41 1 -1.4049 -13.6203 1.3246 42 1 -1.1757 -11.8851 1.8168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:39 Heat of formation + Delta-G solvation = 59.847088 kcal Electronic energy + Delta-G solvation = -25072.762049 eV Core-core repulsion = 21218.574617 eV Total energy + Delta-G solvation = -3854.187432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.76107 -40.33975 -36.89688 -35.97493 -35.66351 -34.66398 -33.76932 -32.18335 -31.43796 -27.83734 -27.80159 -27.17132 -26.30738 -23.72400 -23.31246 -21.80933 -20.98936 -20.66883 -19.23095 -18.39096 -17.59805 -17.40012 -16.84272 -16.61037 -16.22241 -15.73359 -15.40592 -15.01309 -14.66026 -14.50852 -14.40734 -13.99008 -13.86576 -13.58944 -13.47260 -12.87426 -12.57596 -12.28913 -12.24476 -12.16167 -11.92098 -11.79024 -11.76809 -11.73737 -11.24192 -11.16492 -10.89217 -10.86527 -10.54465 -10.43649 -9.94120 -9.76387 -9.72496 -9.59223 -9.32604 -9.09038 -8.40210 -6.05635 -4.08452 0.44626 1.11685 1.77470 2.06036 2.84454 2.98996 3.18351 3.32800 3.36475 3.39973 3.75128 3.83440 4.00624 4.15925 4.29229 4.42933 4.43571 4.51507 4.59822 4.64421 4.78639 4.91045 4.94160 5.03768 5.07197 5.18832 5.21754 5.31021 5.52479 5.63177 5.72013 5.89820 6.08264 6.27987 6.28570 6.45706 6.85456 6.88904 7.56809 7.67060 7.92484 8.12717 8.33208 8.97609 9.56229 11.05534 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.002203 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.046369 B =12709.215234 C =13618.209844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.609 4.609 12 S 2.601 3.399 13 O -0.962 6.962 14 O -0.958 6.958 15 N -1.121 6.121 16 C 0.203 3.797 17 C -0.027 4.027 18 C -0.031 4.031 19 N -0.286 5.286 20 C 0.070 3.930 21 C 0.019 3.981 22 N -0.645 5.645 23 C 0.020 3.980 24 N -0.085 5.085 25 N -0.248 5.248 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.415 0.585 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.347 0.653 41 H 0.093 0.907 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -26.952 0.262 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.697 3.303 13 O -0.952 6.952 14 O -0.948 6.948 15 N -0.879 5.879 16 C 0.075 3.925 17 C -0.166 4.166 18 C -0.182 4.182 19 N -0.079 5.079 20 C -0.034 4.034 21 C -0.111 4.111 22 N -0.272 5.272 23 C -0.111 4.111 24 N -0.064 5.064 25 N -0.115 5.115 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.249 0.751 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.212 0.788 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.163 0.837 41 H 0.112 0.888 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.618 -27.501 0.251 28.821 hybrid contribution -0.916 1.003 -0.135 1.365 sum -9.533 -26.498 0.116 28.161 Atomic orbital electron populations 1.69943 1.06084 1.26873 1.50600 1.25016 0.94891 0.99358 0.95103 0.86615 0.79571 0.82815 0.78782 1.20112 1.21277 1.20122 1.21227 0.93249 0.90916 1.51088 0.92402 1.19059 0.93530 0.90445 0.97703 1.21507 0.99410 0.91625 1.02064 1.30553 1.16396 1.15848 1.11255 1.05337 0.75582 0.75086 0.74285 1.93583 1.70555 1.85858 1.45190 1.93581 1.70015 1.85580 1.45595 1.55761 1.62425 1.42558 1.27115 1.19430 0.94707 0.88177 0.90235 1.21860 0.93497 0.96793 1.04454 1.23407 1.02636 0.84619 1.07578 1.47485 1.15167 1.06550 1.38743 1.25734 0.85468 0.93720 0.98477 1.24241 0.93995 0.99914 0.92973 1.65138 1.07671 1.14213 1.40216 1.24208 0.91059 1.03836 0.91981 1.78368 0.92990 1.21770 1.13275 1.75165 1.23569 0.95253 1.17525 0.92861 0.96105 0.96131 0.91552 0.91482 0.85401 0.85222 0.75147 0.88141 0.89533 0.78839 0.84851 0.86778 0.88588 0.83697 0.88829 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.11 5.16 -26.73 -0.14 -2.24 16 11 C -0.61 -8.75 6.07 37.16 0.23 -8.53 16 12 S 2.60 37.35 5.46 -107.50 -0.59 36.76 16 13 O -0.96 -16.84 18.08 -57.54 -1.04 -17.88 16 14 O -0.96 -16.89 17.50 -57.54 -1.01 -17.90 16 15 N -1.12 -12.03 5.88 -11.66 -0.07 -12.10 16 16 C 0.20 1.92 6.69 -5.19 -0.03 1.88 16 17 C -0.03 -0.27 6.64 -82.77 -0.55 -0.82 16 18 C -0.03 -0.21 10.71 -17.05 -0.18 -0.40 16 19 N -0.29 -2.12 3.54 -55.90 -0.20 -2.32 16 20 C 0.07 0.26 5.13 -69.63 -0.36 -0.10 16 21 C 0.02 0.04 8.26 -2.77 -0.02 0.02 16 22 N -0.64 -1.94 8.56 -117.15 -1.00 -2.94 16 23 C 0.02 0.07 8.70 -2.77 -0.02 0.04 16 24 N -0.09 -0.96 13.16 60.35 0.79 -0.16 16 25 N -0.25 -3.20 12.41 33.29 0.41 -2.78 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 32 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.42 3.98 8.61 -34.48 -0.30 3.68 16 34 H 0.10 1.05 7.70 -51.93 -0.40 0.65 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.19 0.65 6.72 -52.49 -0.35 0.29 16 37 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.11 0.26 6.31 -51.93 -0.33 -0.07 16 39 H 0.10 0.07 8.14 -51.93 -0.42 -0.35 16 40 H 0.35 0.37 8.89 -39.29 -0.35 0.02 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -39.02 369.47 -8.96 -47.98 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.92 Total: -2.12 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -1.63 Total: -22.98 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.68 Total: -45.89 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -2.05 Total: -35.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 37.35 SS G_CDS: -0.59 Total: 36.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.02 -8.96 -47.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.831 kcal (2) G-P(sol) polarization free energy of solvation -39.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds