Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47530 * 240.00088 * 3 2 1 5 5 H 1.48504 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46845 * 120.00057 * 3 2 1 7 7 C 1.40042 * 119.99611 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.46380 * 120.00208 * 359.97438 * 7 2 1 10 10 O 1.21679 * 120.00015 * 354.32465 * 9 7 2 11 11 N 1.34773 * 119.99803 * 174.32847 * 9 7 2 12 12 C 1.47081 * 120.88305 * 354.61470 * 11 9 7 13 13 C 1.53234 * 108.52200 * 129.08949 * 12 11 9 14 14 N 1.46904 * 109.34226 * 53.82766 * 13 12 11 15 15 C 1.39517 * 110.99849 * 172.74635 * 14 13 12 16 16 C 1.38793 * 120.56617 * 59.84017 * 15 14 13 17 17 N 1.31813 * 120.76005 * 179.67655 * 16 15 14 18 18 C 1.31933 * 122.07628 * 0.63524 * 17 16 15 19 19 C 1.37986 * 121.05109 * 359.65311 * 18 17 16 20 20 C 1.39658 * 119.10985 * 0.02562 * 19 18 17 21 21 C 1.48373 * 120.93753 * 179.97438 * 20 19 18 22 22 N 1.34077 * 126.67970 * 185.12767 * 21 20 19 23 23 N 1.28984 * 107.26510 * 180.02562 * 22 21 20 24 24 N 1.28734 * 108.95174 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.33365 * 180.02562 * 24 23 22 26 26 N 1.28872 * 109.32616 * 359.73153 * 24 23 22 27 27 C 1.46899 * 111.26906 * 296.89576 * 14 13 12 28 28 C 1.47081 * 120.88107 * 174.89456 * 11 9 7 29 29 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.62520 * 248.79571 * 12 11 9 31 31 H 1.08992 * 109.63086 * 9.37792 * 12 11 9 32 32 H 1.08995 * 109.49698 * 293.87091 * 13 12 11 33 33 H 1.09000 * 109.51590 * 173.80389 * 13 12 11 34 34 H 1.08000 * 119.61910 * 359.97438 * 16 15 14 35 35 H 1.07994 * 119.47681 * 179.68029 * 18 17 16 36 36 H 1.08005 * 120.44861 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.49138 * 303.14370 * 27 14 13 38 38 H 1.09004 * 109.51488 * 183.07541 * 27 14 13 39 39 H 1.09000 * 109.62991 * 350.62162 * 28 11 9 40 40 H 1.09003 * 109.63255 * 111.19896 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2126 7 6 2.0069 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0627 -2.4831 0.1041 11 7 1.9439 -3.6448 -0.1164 12 6 3.3940 -3.6612 -0.3616 13 6 4.0514 -4.5854 0.6688 14 7 3.3996 -5.9013 0.6280 15 6 4.0745 -6.8187 1.4339 16 6 4.2199 -6.5894 2.7950 17 7 4.8512 -7.4566 3.5611 18 6 5.3799 -8.5643 3.0770 19 6 5.2876 -8.8694 1.7345 20 6 4.6228 -7.9861 0.8811 21 6 4.5001 -8.2736 -0.5693 22 7 3.9751 -7.4682 -1.5038 23 7 4.0569 -8.0873 -2.6325 24 7 4.6072 -9.2352 -2.4408 25 1 4.7843 -9.8945 -3.1299 26 7 4.8916 -9.3685 -1.1909 27 6 1.9842 -5.8069 1.0094 28 6 1.2420 -4.9327 -0.0071 29 1 -0.4850 0.8401 0.0004 30 1 3.5912 -4.0343 -1.3665 31 1 3.7944 -2.6529 -0.2572 32 1 3.9420 -4.1561 1.6647 33 1 5.1103 -4.6965 0.4350 34 1 3.8068 -5.6925 3.2324 35 1 5.8927 -9.2432 3.7422 36 1 5.7237 -9.7791 1.3487 37 1 1.9035 -5.3605 2.0005 38 1 1.5433 -6.8037 1.0224 39 1 0.2196 -4.7650 0.3316 40 1 1.2323 -5.4281 -0.9781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592671659.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = 158.933901 kcal Electronic energy + Delta-G solvation = -28037.159679 eV Core-core repulsion = 24084.117774 eV Total energy + Delta-G solvation = -3953.041905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.47857 -40.72378 -38.56333 -36.56640 -34.70124 -33.99391 -33.51020 -32.46477 -31.53079 -30.70091 -29.98738 -26.85417 -25.67363 -25.34937 -24.44949 -23.02462 -22.81878 -21.92233 -20.73822 -19.38901 -18.82976 -17.46530 -17.17797 -16.93397 -16.45870 -15.99040 -15.37460 -14.95273 -14.45254 -14.36471 -14.30510 -14.09059 -13.94276 -13.87383 -13.76038 -13.10972 -12.53084 -12.37962 -12.14060 -11.83095 -11.57956 -11.43355 -11.29088 -11.25074 -11.08840 -11.02996 -10.88319 -10.72157 -10.55939 -10.21962 -10.03625 -9.96012 -9.50409 -9.04395 -8.82934 -8.22320 -7.55240 -7.15157 -6.17147 -4.61897 0.42812 0.85124 1.16643 2.12805 2.34356 3.17162 3.22320 3.23674 3.51767 3.59245 3.72946 4.06812 4.11467 4.31481 4.58213 4.63436 4.79743 4.82605 4.99186 5.10116 5.31416 5.41340 5.46869 5.50646 5.67356 5.68995 5.74232 5.81543 5.85559 5.92228 6.09129 6.25234 6.26830 6.33237 6.50120 6.60499 6.79124 7.13955 7.33636 7.47827 7.64553 7.73943 8.15990 8.16041 8.39750 9.04631 9.48098 10.60489 10.79144 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.003449 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.823001 B = 8116.742962 C = 8914.596288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.579 6.579 11 N -0.642 5.642 12 C 0.131 3.869 13 C 0.050 3.950 14 N -0.486 5.486 15 C 0.090 3.910 16 C 0.075 3.925 17 N -0.465 5.465 18 C 0.088 3.912 19 C -0.133 4.133 20 C 0.042 3.958 21 C 0.216 3.784 22 N -0.203 5.203 23 N -0.059 5.059 24 N -0.235 5.235 25 H 0.472 0.528 26 N -0.298 5.298 27 C 0.054 3.946 28 C 0.130 3.870 29 H 0.268 0.732 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 -19.299 0.048 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.461 6.461 11 N -0.381 5.381 12 C 0.007 3.993 13 C -0.077 4.077 14 N -0.208 5.208 15 C -0.009 4.009 16 C -0.085 4.085 17 N -0.174 5.174 18 C -0.068 4.068 19 C -0.155 4.155 20 C 0.030 3.970 21 C -0.064 4.064 22 N -0.076 5.076 23 N -0.054 5.054 24 N -0.080 5.080 25 H 0.326 0.674 26 N -0.151 5.151 27 C -0.073 4.073 28 C 0.006 3.994 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.163 0.837 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.201 -18.991 -0.135 22.573 hybrid contribution 0.753 0.191 -0.159 0.793 sum 12.953 -18.800 -0.294 22.832 Atomic orbital electron populations 1.70007 1.07055 1.27353 1.35324 1.25711 0.94583 1.00229 0.92592 0.86476 0.79873 0.81216 0.79451 1.19241 1.20604 1.19283 1.20919 0.93490 0.89282 1.54433 0.91004 1.18222 0.86812 0.82177 0.76094 1.90589 1.14365 1.86072 1.55100 1.48213 1.06780 1.05106 1.77986 1.21467 0.82410 0.99031 0.96429 1.22641 0.97901 0.87218 0.99932 1.59487 1.02321 1.08270 1.50706 1.19898 0.96150 0.93349 0.91491 1.23479 0.96002 0.98623 0.90358 1.67556 1.07406 1.02684 1.39797 1.22681 0.97037 0.94198 0.92885 1.22157 0.99047 0.99997 0.94340 1.17569 0.98673 0.94553 0.86198 1.23241 0.99583 0.87541 0.96055 1.76602 1.15178 1.22513 0.93333 1.79135 1.12022 0.93279 1.20999 1.47759 1.38445 1.15078 1.06672 0.67421 1.74848 1.22725 1.24877 0.92623 1.22587 0.86212 1.00102 0.98373 1.21154 0.96510 0.84658 0.97103 0.92075 0.92642 0.88576 0.93984 0.90823 0.82201 0.82102 0.83749 0.94132 0.91076 0.89604 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.96 11.84 55.55 0.66 -22.30 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 19.95 29.56 -169.99 -5.02 14.93 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -15.07 8.87 -35.63 -0.32 -15.39 16 8 H 0.07 1.80 5.70 -52.49 -0.30 1.50 16 9 C 0.56 15.85 7.62 -12.99 -0.10 15.76 16 10 O -0.58 -18.66 14.52 5.21 0.08 -18.59 16 11 N -0.64 -14.56 3.01 -174.13 -0.52 -15.08 16 12 C 0.13 2.46 6.51 -3.60 -0.02 2.44 16 13 C 0.05 0.78 5.25 -3.70 -0.02 0.76 16 14 N -0.49 -7.28 2.99 -170.46 -0.51 -7.79 16 15 C 0.09 1.20 4.68 -83.37 -0.39 0.81 16 16 C 0.08 0.96 9.92 -17.35 -0.17 0.78 16 17 N -0.47 -5.64 10.34 -13.16 -0.14 -5.77 16 18 C 0.09 0.83 11.16 -17.60 -0.20 0.64 16 19 C -0.13 -1.26 9.79 -39.14 -0.38 -1.64 16 20 C 0.04 0.51 5.93 -104.41 -0.62 -0.11 16 21 C 0.22 2.75 7.92 -156.29 -1.24 1.51 16 22 N -0.20 -2.95 11.09 32.14 0.36 -2.59 16 23 N -0.06 -0.72 13.47 60.35 0.81 0.09 16 24 N -0.23 -2.00 7.90 60.35 0.48 -1.53 16 25 H 0.47 1.65 8.96 -340.36 -3.05 -1.40 16 26 N -0.30 -3.10 12.19 32.16 0.39 -2.70 16 27 C 0.05 0.87 5.31 -3.70 -0.02 0.85 16 28 C 0.13 2.59 6.58 -3.60 -0.02 2.57 16 29 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.85 5.38 -51.93 -0.28 1.57 16 32 H 0.04 0.66 7.41 -51.93 -0.38 0.28 16 33 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 34 H 0.16 2.01 7.20 -52.49 -0.38 1.63 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.14 1.05 7.98 -52.48 -0.42 0.63 16 37 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 38 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 39 H 0.09 1.88 7.10 -51.93 -0.37 1.51 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -36.52 339.47 -8.72 -45.24 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.82 Total: -0.34 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: -3.60 Total: 11.32 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 1.53 Total: -57.68 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.08 Total: -18.59 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.52 -8.72 -45.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592671659.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.177 kcal (2) G-P(sol) polarization free energy of solvation -36.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds