Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48502 * 109.46874 * 94.69811 * 3 2 1 5 5 H 1.48498 * 109.47069 * 214.70120 * 3 2 1 6 6 H 1.48501 * 109.47075 * 334.70053 * 3 2 1 7 7 C 1.40041 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99893 * 8.99049 * 7 2 1 9 9 C 1.46372 * 120.00304 * 188.99135 * 7 2 1 10 10 O 1.21691 * 119.99979 * 13.24807 * 9 7 2 11 11 N 1.34784 * 120.00278 * 193.24972 * 9 7 2 12 12 C 1.47074 * 120.87647 * 354.88733 * 11 9 7 13 13 C 1.53696 * 108.27743 * 128.75931 * 12 11 9 14 14 N 1.46894 * 109.25751 * 54.07725 * 13 12 11 15 15 C 1.39201 * 111.00094 * 172.61170 * 14 13 12 16 16 C 1.39569 * 120.82321 * 124.02609 * 15 14 13 17 17 C 1.37946 * 119.26800 * 179.72557 * 16 15 14 18 18 N 1.31882 * 120.96954 * 0.55768 * 17 16 15 19 19 C 1.32737 * 121.80533 * 359.71659 * 18 17 16 20 20 C 1.48450 * 119.68707 * 179.97438 * 19 18 17 21 21 N 1.34056 * 126.67523 * 180.02562 * 20 19 18 22 22 N 1.28983 * 107.26390 * 179.97438 * 21 20 19 23 23 N 1.28720 * 108.95095 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.34470 * 180.02562 * 23 22 21 25 25 N 1.28876 * 109.31867 * 359.76389 * 23 22 21 26 26 C 1.38999 * 120.62782 * 359.97438 * 19 18 17 27 27 C 1.46900 * 111.27189 * 296.76250 * 14 13 12 28 28 C 1.47074 * 120.88239 * 175.17093 * 11 9 7 29 29 H 0.96994 * 120.00332 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.62963 * 248.52125 * 12 11 9 31 31 H 1.08996 * 109.63328 * 9.10465 * 12 11 9 32 32 H 1.09004 * 109.64383 * 294.07729 * 13 12 11 33 33 H 1.08997 * 109.42641 * 173.94592 * 13 12 11 34 34 H 1.08002 * 120.36973 * 359.97438 * 16 15 14 35 35 H 1.08004 * 119.51311 * 180.24946 * 17 16 15 36 36 H 1.08003 * 120.51545 * 180.02562 * 26 19 18 37 37 H 1.08998 * 109.48928 * 303.14251 * 27 14 13 38 38 H 1.09002 * 109.52091 * 183.07759 * 27 14 13 39 39 H 1.09006 * 109.62945 * 350.89063 * 28 11 9 40 40 H 1.08992 * 109.63297 * 111.27998 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.5874 1.9891 1.3954 5 1 3.4850 1.4710 -0.7970 6 1 1.3919 2.6794 -0.5983 7 6 2.0070 -1.2127 0.0005 8 1 1.4770 -2.1425 -0.1452 9 6 3.4572 -1.2204 0.1986 10 8 4.0219 -0.2196 0.5993 11 7 4.1673 -2.3358 -0.0627 12 6 3.4942 -3.5879 -0.4401 13 6 4.1472 -4.1173 -1.7268 14 7 5.5977 -4.2293 -1.5233 15 6 6.2059 -4.8599 -2.6050 16 6 7.2451 -4.2413 -3.3016 17 6 7.8288 -4.8979 -4.3652 18 7 7.4116 -6.0925 -4.7368 19 6 6.4232 -6.7156 -4.1070 20 6 5.9909 -8.0597 -4.5656 21 7 5.0144 -8.8104 -4.0366 22 7 4.9561 -9.9013 -4.7224 23 7 5.8485 -9.8607 -5.6491 24 1 6.0112 -10.5589 -6.3025 25 7 6.4883 -8.7444 -5.5762 26 6 5.7891 -6.1216 -3.0220 27 6 6.2036 -2.9150 -1.2714 28 6 5.6352 -2.3348 0.0281 29 1 -0.4850 0.8400 -0.0004 30 1 3.6076 -4.3200 0.3595 31 1 2.4360 -3.3958 -0.6172 32 1 3.9473 -3.4298 -2.5488 33 1 3.7364 -5.0984 -1.9646 34 1 7.5912 -3.2611 -3.0088 35 1 8.6360 -4.4245 -4.9045 36 1 4.9854 -6.6304 -2.5106 37 1 5.9750 -2.2444 -2.0997 38 1 7.2842 -3.0238 -1.1791 39 1 5.9932 -1.3138 0.1606 40 1 5.9503 -2.9459 0.8738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592672138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = 144.803664 kcal Electronic energy + Delta-G solvation = -27108.699615 eV Core-core repulsion = 23155.044976 eV Total energy + Delta-G solvation = -3953.654638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.73018 -40.86794 -38.99693 -37.26633 -34.74962 -34.34852 -33.65556 -32.92059 -31.67799 -30.82337 -30.64097 -27.36006 -26.29989 -25.23042 -24.90833 -23.77915 -22.40883 -22.07632 -20.93561 -19.59596 -18.99664 -17.81820 -17.42174 -16.75406 -16.71246 -15.96655 -15.90521 -15.06244 -14.93717 -14.80131 -14.45392 -14.40114 -14.23408 -14.00580 -13.86335 -13.65870 -12.71572 -12.49754 -12.37788 -12.22692 -11.91397 -11.85470 -11.66241 -11.40758 -11.28172 -11.18414 -11.07454 -10.93214 -10.86558 -10.49830 -10.37947 -9.78297 -9.50242 -9.15935 -9.08884 -8.34255 -7.98981 -7.66025 -6.68697 -4.91575 0.37366 0.90511 1.08545 1.93985 2.02793 3.13033 3.37339 3.43006 3.46023 3.67586 3.68014 3.90855 4.06768 4.16016 4.48665 4.50496 4.67207 4.77521 4.88865 4.98513 5.11711 5.19662 5.25213 5.28383 5.35093 5.45809 5.52303 5.54473 5.63069 5.70963 5.74794 6.01239 6.06368 6.16776 6.24513 6.28640 6.39159 6.79766 6.93690 7.01368 7.50280 7.67208 7.78531 7.89406 8.22263 8.62972 9.04299 9.94019 10.31768 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.002685 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.871766 B =10424.618882 C =11174.333397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.102 3.898 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.322 1.322 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.554 3.446 10 O -0.615 6.615 11 N -0.636 5.636 12 C 0.124 3.876 13 C 0.043 3.957 14 N -0.482 5.482 15 C 0.166 3.834 16 C -0.212 4.212 17 C 0.129 3.871 18 N -0.481 5.481 19 C 0.215 3.785 20 C 0.225 3.775 21 N -0.257 5.257 22 N -0.050 5.050 23 N -0.230 5.230 24 H 0.476 0.524 25 N -0.263 5.263 26 C -0.150 4.150 27 C 0.037 3.963 28 C 0.123 3.877 29 H 0.283 0.717 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.890 -16.096 -11.052 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.117 4.117 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.253 1.253 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.364 3.636 10 O -0.507 6.507 11 N -0.371 5.371 12 C -0.001 4.001 13 C -0.082 4.082 14 N -0.196 5.196 15 C 0.058 3.942 16 C -0.236 4.236 17 C -0.029 4.029 18 N -0.193 5.193 19 C 0.076 3.924 20 C -0.057 4.057 21 N -0.131 5.131 22 N -0.045 5.045 23 N -0.076 5.076 24 H 0.330 0.670 25 N -0.115 5.115 26 C -0.175 4.175 27 C -0.090 4.090 28 C -0.001 4.001 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.000 -16.742 -11.033 23.896 hybrid contribution 0.240 1.216 -0.326 1.282 sum 13.240 -15.525 -11.358 23.352 Atomic orbital electron populations 1.69552 1.07958 1.30120 1.37849 1.25767 0.94734 1.02083 0.89073 0.85221 0.77711 0.77390 0.79711 1.20404 1.19047 1.25312 1.20761 0.89041 0.95829 1.51245 0.89094 1.18335 0.88305 0.80216 0.76761 1.90207 1.72501 1.33463 1.54574 1.47789 1.04429 1.11115 1.73765 1.21745 0.98613 0.86064 0.93649 1.22906 0.83559 1.01990 0.99784 1.58735 1.05756 1.21555 1.33556 1.19230 0.94040 0.93053 0.87847 1.22496 1.00925 1.02255 0.97911 1.22496 0.97473 0.89387 0.93592 1.67469 1.12039 1.10063 1.29724 1.17422 0.93595 0.88485 0.92856 1.23174 0.93897 0.96645 0.91939 1.76122 1.17006 0.98502 1.21472 1.78942 1.10211 1.16849 0.98469 1.47856 1.21318 1.14387 1.24069 0.66972 1.75136 1.20377 0.95469 1.20473 1.21586 1.03107 0.94802 0.98027 1.22813 0.99203 0.87279 0.99732 1.21325 0.82681 1.01662 0.94481 0.90702 0.92224 0.87300 0.92646 0.89220 0.83750 0.81988 0.83196 0.92723 0.89428 0.88788 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.84 13.92 55.55 0.77 -22.07 16 2 C 0.10 2.82 5.52 -17.37 -0.10 2.72 16 3 Si 0.97 24.88 25.88 -169.99 -4.40 20.48 16 4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.27 -7.10 6.62 56.52 0.37 -6.72 16 6 H -0.32 -7.87 7.11 56.52 0.40 -7.46 16 7 C -0.53 -14.38 9.35 -35.64 -0.33 -14.72 16 8 H 0.09 2.41 6.02 -52.48 -0.32 2.09 16 9 C 0.55 14.09 7.32 -12.99 -0.10 13.99 16 10 O -0.62 -17.16 11.82 5.20 0.06 -17.10 16 11 N -0.64 -12.88 3.00 -173.85 -0.52 -13.40 16 12 C 0.12 2.07 6.54 -3.37 -0.02 2.05 16 13 C 0.04 0.60 5.45 -3.47 -0.02 0.58 16 14 N -0.48 -6.37 4.67 -170.37 -0.80 -7.17 16 15 C 0.17 2.02 5.65 -83.64 -0.47 1.55 16 16 C -0.21 -2.22 8.89 -39.19 -0.35 -2.57 16 17 C 0.13 1.31 11.16 -17.64 -0.20 1.12 16 18 N -0.48 -5.98 10.29 -9.86 -0.10 -6.09 16 19 C 0.22 2.72 6.75 -82.99 -0.56 2.16 16 20 C 0.22 2.78 8.03 -156.30 -1.26 1.53 16 21 N -0.26 -3.17 12.21 32.15 0.39 -2.77 16 22 N -0.05 -0.50 13.47 60.35 0.81 0.31 16 23 N -0.23 -1.73 7.90 60.35 0.48 -1.26 16 24 H 0.48 1.13 8.96 -340.38 -3.05 -1.92 16 25 N -0.26 -2.85 12.38 32.17 0.40 -2.45 16 26 C -0.15 -1.82 8.86 -38.92 -0.34 -2.17 16 27 C 0.04 0.49 4.31 -3.70 -0.02 0.48 16 28 C 0.12 2.06 6.58 -3.60 -0.02 2.03 16 29 H 0.28 7.22 8.29 -40.82 -0.34 6.88 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.97 5.41 -51.93 -0.28 1.69 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.07 6.73 -51.93 -0.35 0.72 16 34 H 0.14 1.28 5.95 -52.49 -0.31 0.97 16 35 H 0.16 1.14 8.06 -52.48 -0.42 0.71 16 36 H 0.15 1.75 7.04 -52.48 -0.37 1.38 16 37 H 0.05 0.76 7.84 -51.93 -0.41 0.36 16 38 H 0.09 0.94 6.94 -51.93 -0.36 0.58 16 39 H 0.09 1.71 7.09 -51.93 -0.37 1.34 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -34.35 333.55 -8.33 -42.68 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.67 Total: -4.95 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -3.78 Total: 8.76 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 1.43 Total: -54.89 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.06 Total: -17.10 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.40 Total: 20.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.35 -8.33 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592672138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.481 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds