Wall clock time and date at job start Tue Mar 31 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.47171 * 179.97438 * 15 13 12 17 17 C 1.38315 * 119.88336 * 269.72567 * 16 15 13 18 18 C 1.38029 * 120.11504 * 179.76695 * 17 16 15 19 19 C 1.39299 * 119.88081 * 0.52934 * 18 17 16 20 20 C 1.48465 * 120.11422 * 179.74646 * 19 18 17 21 21 N 1.34050 * 126.67148 * 180.02562 * 20 19 18 22 22 N 1.28986 * 107.26679 * 179.97438 * 21 20 19 23 23 N 1.28734 * 108.94371 * 0.02562 * 22 21 20 24 24 H 0.97004 * 125.34092 * 179.97438 * 23 22 21 25 25 N 1.28871 * 109.31505 * 359.74957 * 23 22 21 26 26 C 1.39295 * 119.76593 * 359.72857 * 19 18 17 27 27 C 1.38027 * 119.88561 * 359.97438 * 26 19 18 28 28 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 29 29 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 30 30 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 31 31 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 32 32 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 33 33 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 34 34 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 35 35 H 1.08001 * 119.93789 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.05464 * 180.25219 * 18 17 16 37 37 H 1.08005 * 120.05663 * 180.02562 * 26 19 18 38 38 H 1.08003 * 119.94394 * 180.02562 * 27 26 19 39 39 H 1.08998 * 113.77112 * 221.06054 * 28 12 11 40 40 H 1.09000 * 113.87384 * 89.66748 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 6 8.6163 -1.8884 -2.2419 17 6 9.6269 -1.4910 -1.3853 18 6 10.9044 -1.9894 -1.5430 19 6 11.1774 -2.8856 -2.5738 20 6 12.5509 -3.4205 -2.7516 21 7 12.9583 -4.2835 -3.6930 22 7 14.2167 -4.4924 -3.5020 23 7 14.6060 -3.8009 -2.4884 24 1 15.5097 -3.7811 -2.1364 25 7 13.6079 -3.1354 -2.0177 26 6 10.1571 -3.2783 -3.4370 27 6 8.8817 -2.7787 -3.2667 28 6 4.1349 -2.5980 0.0092 29 1 -0.4850 -0.8369 -0.0739 30 1 3.6757 0.4772 1.2467 31 1 3.6421 -1.0897 -2.0898 32 1 4.6935 0.1113 -1.2190 33 1 6.7227 -1.2971 -3.0293 34 1 7.2753 -0.3455 -1.6303 35 1 9.4150 -0.7928 -0.5891 36 1 11.6918 -1.6815 -0.8710 37 1 10.3634 -3.9733 -4.2376 38 1 8.0899 -3.0829 -3.9352 39 1 4.5159 -2.9842 0.9546 40 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592673619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:10 Heat of formation + Delta-G solvation = 111.820125 kcal Electronic energy + Delta-G solvation = -26441.834784 eV Core-core repulsion = 22454.457121 eV Total energy + Delta-G solvation = -3987.377663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.71935 -40.08071 -39.27204 -37.57552 -34.77606 -34.42675 -34.07804 -32.65124 -32.15868 -31.12540 -29.38927 -27.58219 -25.69225 -25.02937 -24.87607 -23.69147 -22.58925 -21.37759 -20.07173 -19.48696 -18.62956 -18.02897 -17.40870 -17.02425 -16.65281 -16.06212 -15.72152 -15.58871 -14.94498 -14.84868 -14.34536 -14.06080 -13.65700 -13.56329 -13.46140 -13.15056 -13.02686 -12.62906 -12.56370 -12.31787 -12.09370 -11.81751 -11.64327 -11.56283 -11.45627 -11.40107 -11.10382 -11.05164 -10.83465 -10.43119 -9.98837 -9.56590 -9.47227 -9.05916 -9.04993 -8.68655 -8.55487 -8.06760 -6.74576 -4.51021 0.49931 0.93302 1.30621 1.95080 2.12971 3.01264 3.05263 3.09253 3.27592 3.31601 3.44259 3.74619 3.94206 4.13640 4.60376 4.67480 4.74266 4.85949 4.91215 5.01866 5.14124 5.16442 5.25817 5.28884 5.49672 5.53997 5.56209 5.74085 5.92341 5.97123 6.01537 6.04317 6.19804 6.23560 6.27496 6.29217 6.40254 6.47598 6.57351 6.76876 7.45799 7.86761 8.03321 8.24793 8.42953 8.54315 8.58103 9.24679 10.61131 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.036076 B = 0.002158 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.948262 B =12970.813125 C =13141.372159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.033 3.967 3 Si 1.033 2.967 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.610 4.610 8 H 0.071 0.929 9 C 0.197 3.803 10 O -0.555 6.555 11 C 0.059 3.941 12 N -0.635 5.635 13 C 0.531 3.469 14 O -0.551 6.551 15 C -0.104 4.104 16 C -0.033 4.033 17 C -0.108 4.108 18 C -0.076 4.076 19 C -0.030 4.030 20 C 0.228 3.772 21 N -0.270 5.270 22 N -0.052 5.052 23 N -0.230 5.230 24 H 0.475 0.525 25 N -0.297 5.297 26 C -0.072 4.072 27 C -0.108 4.108 28 C 0.127 3.873 29 H 0.274 0.726 30 H 0.354 0.646 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.318 -0.819 -6.934 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.174 4.174 3 Si 0.861 3.139 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.206 1.206 7 C -0.648 4.648 8 H 0.090 0.910 9 C 0.155 3.845 10 O -0.364 6.364 11 C -0.064 4.064 12 N -0.369 5.369 13 C 0.320 3.680 14 O -0.430 6.430 15 C -0.144 4.144 16 C -0.034 4.034 17 C -0.126 4.126 18 C -0.096 4.096 19 C -0.034 4.034 20 C -0.052 4.052 21 N -0.143 5.143 22 N -0.047 5.047 23 N -0.075 5.075 24 H 0.329 0.671 25 N -0.148 5.148 26 C -0.093 4.093 27 C -0.126 4.126 28 C 0.006 3.994 29 H 0.084 0.916 30 H 0.205 0.795 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.153 0.847 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 24.345 -0.691 -6.837 25.296 hybrid contribution 0.090 -0.910 0.208 0.938 sum 24.435 -1.601 -6.629 25.369 Atomic orbital electron populations 1.70766 1.06680 1.31299 1.43586 1.25833 0.96541 1.02499 0.92553 0.84279 0.75725 0.76095 0.77772 1.20272 1.19316 1.20611 1.22269 0.89580 0.96172 1.56783 0.91045 1.20513 0.93243 0.88633 0.82061 1.86461 1.76314 1.25679 1.47963 1.24756 0.89047 0.90091 1.02517 1.50166 1.09434 1.28907 1.48427 1.19967 0.80882 0.85671 0.81434 1.90687 1.68939 1.28738 1.54627 1.20692 0.92408 1.00060 1.01200 1.19561 0.93968 0.95475 0.94399 1.20942 0.92040 1.00709 0.98951 1.21061 0.97172 0.95217 0.96149 1.17186 0.86245 1.00669 0.99287 1.23760 0.94878 0.95836 0.90708 1.76090 1.01284 1.15350 1.21552 1.78901 1.07296 1.14176 1.04317 1.47721 1.12856 1.27293 1.19674 0.67115 1.74939 0.95775 1.19405 1.24687 1.21080 0.91694 0.98378 0.98107 1.20938 0.96399 0.96883 0.98395 1.23242 0.85566 0.96844 0.93796 0.91565 0.79543 0.88883 0.90854 0.87865 0.87880 0.85240 0.85049 0.84719 0.85225 0.90824 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.70 55.43 0.76 -24.05 16 2 C 0.03 0.85 5.47 -17.82 -0.10 0.76 16 3 Si 1.03 21.20 24.79 -169.99 -4.21 16.99 16 4 H -0.28 -5.41 6.95 56.52 0.39 -5.02 16 5 H -0.27 -4.73 4.86 56.52 0.27 -4.46 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.61 -15.32 9.04 -34.44 -0.31 -15.63 16 8 H 0.07 1.93 8.04 -52.49 -0.42 1.50 16 9 C 0.20 4.31 1.06 -90.84 -0.10 4.21 16 10 O -0.55 -12.44 13.42 -35.23 -0.47 -12.92 16 11 C 0.06 1.09 6.78 -2.97 -0.02 1.07 16 12 N -0.63 -12.01 3.61 -178.30 -0.64 -12.66 16 13 C 0.53 9.51 8.05 -10.99 -0.09 9.43 16 14 O -0.55 -11.68 16.76 5.56 0.09 -11.58 16 15 C -0.10 -1.35 5.57 -29.04 -0.16 -1.51 16 16 C -0.03 -0.42 4.38 -104.56 -0.46 -0.88 16 17 C -0.11 -1.30 9.68 -39.63 -0.38 -1.69 16 18 C -0.08 -0.87 9.70 -39.26 -0.38 -1.25 16 19 C -0.03 -0.37 5.88 -104.89 -0.62 -0.98 16 20 C 0.23 2.69 7.94 -156.30 -1.24 1.45 16 21 N -0.27 -3.27 12.23 32.16 0.39 -2.88 16 22 N -0.05 -0.52 13.47 60.35 0.81 0.30 16 23 N -0.23 -1.67 7.90 60.35 0.48 -1.19 16 24 H 0.47 1.03 8.96 -340.36 -3.05 -2.02 16 25 N -0.30 -2.97 12.08 32.17 0.39 -2.58 16 26 C -0.07 -0.84 9.70 -39.27 -0.38 -1.22 16 27 C -0.11 -1.29 9.68 -39.63 -0.38 -1.67 16 28 C 0.13 2.61 8.23 -2.97 -0.02 2.59 16 29 H 0.27 7.61 8.72 -40.82 -0.36 7.26 16 30 H 0.35 7.31 4.23 45.56 0.19 7.50 16 31 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 32 H 0.07 1.24 6.54 -51.92 -0.34 0.90 16 33 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.10 1.18 8.08 -51.92 -0.42 0.76 16 35 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 1.30 7.88 -52.49 -0.41 0.88 16 37 H 0.13 1.40 7.89 -52.48 -0.41 0.99 16 38 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -33.09 346.90 -8.50 -41.60 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.68 Total: 9.09 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -4.64 Total: -5.34 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 2.19 Total: -43.06 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.38 Total: -24.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.21 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.09 -8.50 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592673619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.416 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds