Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00363 * 2 1 4 4 H 1.48502 * 109.47222 * 239.99619 * 3 2 1 5 5 H 1.48502 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47570 * 119.99375 * 3 2 1 7 7 C 1.38812 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.47862 * 126.94576 * 359.97226 * 9 7 2 11 11 C 1.56018 * 105.10699 * 182.02219 * 10 9 7 12 12 H 1.08995 * 116.25242 * 159.68153 * 11 10 9 13 13 C 1.57090 * 99.60514 * 32.80072 * 11 10 9 14 14 C 1.49295 * 126.94091 * 179.97438 * 9 7 2 15 15 H 1.08997 * 116.15477 * 15.81944 * 14 9 7 16 16 C 1.56022 * 104.09368 * 246.67737 * 14 9 7 17 17 N 1.47876 * 105.10184 * 288.77140 * 16 14 9 18 18 C 1.34773 * 126.94243 * 182.00214 * 17 16 14 19 19 O 1.21622 * 120.00317 * 179.97438 * 18 17 16 20 20 C 1.47320 * 119.99961 * 359.96858 * 18 17 16 21 21 C 1.37817 * 126.52749 * 0.03362 * 20 18 17 22 22 N 1.34781 * 108.25235 * 179.97438 * 21 20 18 23 23 H 0.97007 * 125.36526 * 179.97438 * 22 21 20 24 24 C 1.37305 * 109.27193 * 359.97438 * 22 21 20 25 25 C 1.47998 * 125.76727 * 180.02562 * 24 22 21 26 26 N 1.34174 * 126.70059 * 179.70561 * 25 24 22 27 27 N 1.28987 * 107.25503 * 179.86758 * 26 25 24 28 28 N 1.28715 * 108.98373 * 0.40596 * 27 26 25 29 29 H 0.97000 * 125.31783 * 179.76135 * 28 27 26 30 30 N 1.28869 * 109.36156 * 359.74138 * 28 27 26 31 31 C 1.35706 * 108.47249 * 359.72153 * 24 22 21 32 32 H 0.97004 * 119.99448 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.31856 * 63.11706 * 10 9 7 34 34 H 1.08996 * 110.31625 * 300.93127 * 10 9 7 35 35 H 1.09006 * 112.36110 * 64.27822 * 13 11 10 36 36 H 1.09000 * 112.37107 * 191.71111 * 13 11 10 37 37 H 1.08994 * 110.31777 * 169.86607 * 16 14 9 38 38 H 1.09001 * 110.31350 * 47.67124 * 16 14 9 39 39 H 1.07999 * 125.87479 * 359.97058 * 21 20 18 40 40 H 1.07996 * 126.47453 * 180.28433 * 31 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1042 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1423 -2.5668 0.0006 11 6 -0.3640 -4.1102 0.0537 12 1 -1.3413 -4.4452 0.4010 13 6 0.8839 -4.5249 0.9131 14 6 1.9101 -3.7618 0.0005 15 1 2.9644 -3.8352 0.2672 16 6 1.5077 -4.3460 -1.3891 17 7 0.0509 -4.5837 -1.2998 18 6 -0.7421 -5.1195 -2.2487 19 8 -1.9320 -5.2587 -2.0395 20 6 -0.1674 -5.5366 -3.5395 21 6 1.1544 -5.4419 -3.9179 22 7 1.2713 -5.9295 -5.1690 23 1 2.0963 -5.9807 -5.6768 24 6 0.0389 -6.3423 -5.6115 25 6 -0.2503 -6.9367 -6.9357 26 7 -1.4447 -7.3512 -7.3850 27 7 -1.2685 -7.8003 -8.5813 28 7 -0.0237 -7.6919 -8.8902 29 1 0.3701 -7.9621 -9.7345 30 7 0.6175 -7.1680 -7.9027 31 6 -0.8683 -6.1193 -4.6272 32 1 -0.4849 0.8401 -0.0004 33 1 -0.5739 -2.1537 -0.9111 34 1 -0.5814 -2.0910 0.8774 35 1 0.8450 -4.1184 1.9238 36 1 1.0490 -5.6023 0.9119 37 1 2.0334 -5.2830 -1.5723 38 1 1.7261 -3.6276 -2.1792 39 1 1.9583 -5.0453 -3.3155 40 1 -1.9246 -6.3407 -4.6654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = 209.074118 kcal Electronic energy + Delta-G solvation = -27420.996505 eV Core-core repulsion = 23470.128842 eV Total energy + Delta-G solvation = -3950.867662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.71671 -41.42558 -39.78097 -37.44576 -34.65738 -33.74643 -33.50352 -31.80954 -31.11276 -29.70567 -28.61439 -28.43067 -25.29445 -24.85585 -24.28985 -23.93367 -22.15828 -20.96593 -20.14009 -19.66223 -19.47334 -18.81653 -17.69630 -17.43447 -16.79367 -16.12773 -15.55814 -15.00971 -14.73270 -14.45155 -14.17288 -14.14325 -13.88797 -13.44987 -13.30381 -12.97673 -12.58988 -12.45919 -11.91884 -11.83246 -11.67678 -11.64894 -11.42754 -11.28167 -11.25172 -10.99317 -10.84597 -10.72462 -10.58345 -10.23080 -10.07871 -9.62934 -9.44527 -9.06649 -8.69464 -8.26076 -7.91030 -6.91765 -5.75856 -3.10791 0.67098 1.22379 1.91559 1.93748 2.70664 2.74840 3.36099 3.37293 3.41247 3.43998 3.67572 3.92203 4.10261 4.41905 4.89605 4.93675 4.97292 5.12290 5.16386 5.19798 5.32000 5.41874 5.55964 5.62895 5.75280 5.80488 5.87403 6.02400 6.05294 6.15441 6.32064 6.43155 6.47242 6.58382 6.61079 6.68035 6.77657 7.15910 7.43913 7.54394 7.74522 7.85982 8.11028 8.20346 8.77887 9.10686 9.71690 10.40944 11.35802 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017782 B = 0.002839 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.229407 B = 9861.185906 C =10514.132800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.101 3.899 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.076 3.924 17 N -0.603 5.603 18 C 0.600 3.400 19 O -0.554 6.554 20 C -0.212 4.212 21 C 0.065 3.935 22 N -0.528 5.528 23 H 0.423 0.577 24 C 0.047 3.953 25 C 0.259 3.741 26 N -0.257 5.257 27 N -0.046 5.046 28 N -0.228 5.228 29 H 0.475 0.525 30 N -0.313 5.313 31 C -0.058 4.058 32 H 0.255 0.745 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.195 0.805 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -15.851 -12.742 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.321 5.321 10 C 0.048 3.952 11 C -0.002 4.002 12 H 0.133 0.867 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.049 4.049 17 N -0.336 5.336 18 C 0.390 3.610 19 O -0.434 6.434 20 C -0.221 4.221 21 C -0.075 4.075 22 N -0.122 5.122 23 H 0.261 0.739 24 C -0.065 4.065 25 C -0.020 4.020 26 N -0.131 5.131 27 N -0.041 5.041 28 N -0.074 5.074 29 H 0.329 0.671 30 N -0.165 5.165 31 C -0.087 4.087 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.212 0.788 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.921 -15.942 -13.295 21.333 hybrid contribution 1.463 1.013 -0.712 1.917 sum 6.384 -14.929 -14.007 21.444 Atomic orbital electron populations 1.69914 1.04912 1.25444 1.56054 1.24823 0.95667 0.97687 1.02000 0.86212 0.78443 0.83297 0.77815 1.21232 1.21646 1.21140 1.18973 0.90309 0.82105 1.44800 0.90260 1.45235 1.01418 0.99206 1.86242 1.21949 0.84545 0.87346 1.01388 1.24325 0.97774 0.97517 0.80543 0.86723 1.24151 0.96751 0.98902 0.99204 1.23198 0.96525 0.86408 0.90798 0.87612 1.23525 0.80716 0.98394 1.02282 1.48985 1.09000 1.60226 1.15417 1.16895 0.85203 0.76963 0.81906 1.90746 1.14922 1.57421 1.80323 1.19700 0.93030 1.12389 0.97014 1.23302 0.99191 0.99583 0.85378 1.41564 1.08928 1.47913 1.13777 0.73933 1.16373 0.86421 1.13091 0.90639 1.22523 0.86138 0.99614 0.93743 1.76196 1.21622 1.13802 1.01447 1.78949 1.00187 1.15670 1.09297 1.47610 1.04858 1.39446 1.15458 0.67089 1.74948 1.25333 1.18605 0.97614 1.20992 0.99377 0.98258 0.90032 0.93496 0.93343 0.92649 0.89799 0.91598 0.92643 0.90819 0.78850 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.56 55.49 0.59 -25.87 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.04 10.37 -15.06 -0.16 -6.20 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.60 -13.85 3.02 -156.33 -0.47 -14.32 16 10 C 0.17 4.08 4.76 -1.68 -0.01 4.07 16 11 C 0.10 1.93 5.24 -62.56 -0.33 1.60 16 12 H 0.11 2.16 8.05 -51.93 -0.42 1.74 16 13 C -0.15 -2.45 6.81 -22.29 -0.15 -2.60 16 14 C 0.14 2.43 5.53 -62.53 -0.35 2.08 16 15 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.08 1.19 4.38 -1.67 -0.01 1.18 16 17 N -0.60 -10.95 2.95 -158.07 -0.47 -11.42 16 18 C 0.60 11.45 7.89 -12.57 -0.10 11.35 16 19 O -0.55 -12.39 17.27 5.26 0.09 -12.30 16 20 C -0.21 -3.30 6.12 -104.96 -0.64 -3.94 16 21 C 0.07 0.78 10.57 -16.41 -0.17 0.60 16 22 N -0.53 -5.36 6.01 -9.19 -0.06 -5.42 16 23 H 0.42 2.98 8.96 -40.82 -0.37 2.62 16 24 C 0.05 0.58 7.08 -82.32 -0.58 0.00 16 25 C 0.26 3.11 8.20 -156.26 -1.28 1.82 16 26 N -0.26 -3.29 12.52 32.09 0.40 -2.89 16 27 N -0.05 -0.47 13.47 60.35 0.81 0.35 16 28 N -0.23 -1.62 7.90 60.35 0.48 -1.15 16 29 H 0.47 0.96 8.96 -340.35 -3.05 -2.09 16 30 N -0.31 -2.98 12.41 32.11 0.40 -2.58 16 31 C -0.06 -0.86 10.59 -39.09 -0.41 -1.27 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.05 1.33 7.68 -51.93 -0.40 0.93 16 34 H 0.06 1.45 7.46 -51.93 -0.39 1.06 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.66 6.92 -51.93 -0.36 0.30 16 38 H 0.07 1.23 7.21 -51.93 -0.37 0.85 16 39 H 0.20 1.93 4.49 -52.49 -0.24 1.69 16 40 H 0.16 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.20 338.37 -9.26 -44.46 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.83 Total: 1.21 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -4.29 Total: 8.48 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 1.68 Total: -63.30 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.20 -9.26 -44.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.538 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 218.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 209.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds