Wall clock time and date at job start Tue Mar 31 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00004 * 2 1 4 4 H 1.48497 * 109.47200 * 240.00181 * 3 2 1 5 5 H 1.48492 * 109.46965 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46617 * 120.00126 * 3 2 1 7 7 C 1.38813 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00023 * 204.51284 * 7 2 1 9 9 N 1.36933 * 119.99987 * 24.51077 * 7 2 1 10 10 C 1.46971 * 120.59729 * 203.05508 * 9 7 2 11 11 C 1.53367 * 108.63658 * 235.20653 * 10 9 7 12 12 N 1.46972 * 108.63611 * 310.57516 * 11 10 9 13 13 C 1.34777 * 120.59364 * 235.20222 * 12 11 10 14 14 O 1.21514 * 119.99609 * 8.39645 * 13 12 11 15 15 C 1.48181 * 119.99870 * 188.39561 * 13 12 11 16 16 C 1.39347 * 119.65997 * 187.91760 * 15 13 12 17 17 C 1.38692 * 119.25174 * 180.31588 * 16 15 13 18 18 C 1.38413 * 118.57810 * 359.43979 * 17 16 15 19 19 C 1.39594 * 119.26234 * 0.27086 * 18 17 16 20 20 C 1.48446 * 119.65165 * 180.02562 * 19 18 17 21 21 N 1.34052 * 126.67900 * 0.02562 * 20 19 18 22 22 N 1.28983 * 107.26886 * 180.02562 * 21 20 19 23 23 N 1.28730 * 108.94663 * 359.97438 * 22 21 20 24 24 H 0.97003 * 125.33960 * 179.97438 * 23 22 21 25 25 N 1.28870 * 109.31880 * 359.73197 * 23 22 21 26 26 N 1.32292 * 120.69064 * 0.02712 * 19 18 17 27 27 C 1.46963 * 118.80940 * 55.47555 * 12 11 10 28 28 C 1.46962 * 120.59413 * 23.03660 * 9 7 2 29 29 H 0.97000 * 120.00204 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.61005 * 115.45919 * 10 9 7 31 31 H 1.08998 * 109.60289 * 354.95090 * 10 9 7 32 32 H 1.08998 * 109.61182 * 190.82874 * 11 10 9 33 33 H 1.08998 * 109.61016 * 70.31790 * 11 10 9 34 34 H 1.07996 * 120.37465 * 0.05864 * 16 15 13 35 35 H 1.07994 * 120.71034 * 179.70857 * 17 16 15 36 36 H 1.07996 * 120.36335 * 180.29338 * 18 17 16 37 37 H 1.09001 * 109.60692 * 64.27126 * 27 12 11 38 38 H 1.08999 * 109.60956 * 184.77539 * 27 12 11 39 39 H 1.09001 * 109.61299 * 244.53996 * 28 9 7 40 40 H 1.09004 * 109.61290 * 5.04554 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0172 -1.2444 0.3875 9 7 1.4181 -2.3344 -0.4930 10 6 1.8794 -3.6642 -0.0702 11 6 2.2438 -4.4766 -1.3189 12 7 1.1354 -4.3837 -2.2796 13 6 0.5526 -5.4981 -2.7644 14 8 0.8354 -6.5838 -2.2976 15 6 -0.4328 -5.3993 -3.8666 16 6 -1.1528 -6.5288 -4.2511 17 6 -2.0682 -6.4283 -5.2882 18 6 -2.2434 -5.1991 -5.9000 19 6 -1.4942 -4.1058 -5.4617 20 6 -1.6755 -2.7834 -6.1113 21 7 -2.5123 -2.4937 -7.1176 22 7 -2.3659 -1.2412 -7.3888 23 7 -1.4799 -0.7433 -6.5988 24 1 -1.1854 0.1810 -6.5973 25 7 -1.0492 -1.6642 -5.8068 26 7 -0.6243 -4.2359 -4.4735 27 6 0.6779 -3.0540 -2.7067 28 6 0.3098 -2.2416 -1.4536 29 1 -0.4850 0.8400 0.0004 30 1 1.0838 -4.1706 0.4764 31 1 2.7569 -3.5611 0.5681 32 1 2.4029 -5.5191 -1.0436 33 1 3.1511 -4.0714 -1.7670 34 1 -0.9966 -7.4726 -3.7501 35 1 -2.6354 -7.2896 -5.6085 36 1 -2.9520 -5.0871 -6.7072 37 1 1.4763 -2.5500 -3.2513 38 1 -0.1974 -3.1569 -3.3481 39 1 -0.5976 -2.6466 -1.0056 40 1 0.1506 -1.1990 -1.7290 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592678491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:03 Heat of formation + Delta-G solvation = 189.287952 kcal Electronic energy + Delta-G solvation = -28104.251272 eV Core-core repulsion = 24152.525618 eV Total energy + Delta-G solvation = -3951.725655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.61276 -40.86230 -38.95862 -36.78238 -34.61300 -34.05069 -33.76902 -32.86678 -31.38025 -30.93346 -29.95540 -27.11638 -25.57266 -25.05588 -24.32391 -23.19952 -22.90291 -22.09321 -20.83065 -19.57184 -18.82665 -17.49455 -17.29950 -17.16689 -16.32368 -16.09452 -15.43816 -15.23733 -15.14439 -14.64889 -14.15052 -13.93828 -13.87672 -13.62595 -13.42711 -13.27108 -13.01863 -12.62854 -12.33073 -12.19717 -11.63159 -11.54268 -11.41416 -11.24337 -11.16058 -10.82786 -10.69505 -10.48817 -10.28174 -10.20487 -10.12984 -9.95094 -9.78024 -9.16587 -8.70000 -8.53415 -8.17307 -6.72584 -5.83061 -3.18095 0.29263 0.69808 1.01764 2.00259 2.08843 2.91617 3.08600 3.35848 3.36189 3.42051 3.44699 3.77302 3.84116 4.39377 4.49530 4.64520 4.72115 4.79251 4.83421 5.14108 5.27621 5.31774 5.42562 5.49484 5.70211 5.82695 5.91971 5.97175 6.14775 6.16467 6.20925 6.24986 6.44433 6.55805 6.75017 6.82394 7.13758 7.28737 7.42779 7.53506 7.75260 7.93917 7.98549 8.36242 8.45085 9.14861 9.80496 10.35903 11.24613 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.004833 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.631576 B = 5792.300575 C = 8182.949827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.002 3.998 3 Si 0.897 3.103 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.133 3.867 11 C 0.092 3.908 12 N -0.569 5.569 13 C 0.560 3.440 14 O -0.552 6.552 15 C 0.097 3.903 16 C -0.098 4.098 17 C -0.078 4.078 18 C -0.110 4.110 19 C 0.192 3.808 20 C 0.214 3.786 21 N -0.262 5.262 22 N -0.051 5.051 23 N -0.223 5.223 24 H 0.479 0.521 25 N -0.247 5.247 26 N -0.412 5.412 27 C 0.047 3.953 28 C 0.156 3.844 29 H 0.254 0.746 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.058 0.942 38 H 0.141 0.859 39 H 0.016 0.984 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -7.865 -15.008 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.197 4.197 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.316 5.316 10 C 0.006 3.994 11 C -0.032 4.032 12 N -0.298 5.298 13 C 0.346 3.654 14 O -0.431 6.431 15 C -0.042 4.042 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.132 4.132 19 C 0.052 3.948 20 C -0.067 4.067 21 N -0.136 5.136 22 N -0.046 5.046 23 N -0.070 5.070 24 H 0.334 0.666 25 N -0.098 5.098 26 N -0.125 5.125 27 C -0.076 4.076 28 C 0.030 3.970 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.077 0.923 38 H 0.157 0.843 39 H 0.034 0.966 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.712 -7.109 -14.849 17.124 hybrid contribution 0.355 0.779 0.152 0.869 sum -4.357 -6.330 -14.698 16.585 Atomic orbital electron populations 1.70111 1.05324 1.25661 1.53096 1.24867 0.95062 0.98377 1.01350 0.86438 0.79134 0.83536 0.78212 1.21091 1.21730 1.20881 1.19185 0.95876 0.86137 1.37086 0.91340 1.44136 1.39192 1.00245 1.48009 1.21258 0.98153 0.87169 0.92858 1.22314 0.88204 1.01308 0.91361 1.48018 1.33296 1.06797 1.41732 1.17807 0.81091 0.84537 0.81998 1.90730 1.64360 1.27477 1.60549 1.21334 0.97357 0.88859 0.96655 1.22286 0.93736 1.00032 0.95898 1.21598 0.96748 0.97710 0.94334 1.22163 0.98770 0.92018 1.00265 1.17886 0.95616 0.88033 0.93304 1.23065 0.95036 0.93102 0.95510 1.76015 1.19819 1.04296 1.13476 1.78893 1.07372 1.03677 1.14686 1.47878 1.25159 1.14004 1.19939 0.66627 1.75277 1.21850 0.97431 1.15291 1.67688 1.15589 1.23993 1.05201 1.24002 1.02704 0.80839 1.00064 1.21339 0.88823 1.00269 0.86580 0.93624 0.95860 0.91515 0.89921 0.91599 0.82735 0.83078 0.82996 0.92314 0.84342 0.96568 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.76 11.29 55.49 0.63 -25.14 16 2 C 0.00 0.05 4.77 -17.43 -0.08 -0.03 16 3 Si 0.90 21.28 29.62 -169.99 -5.03 16.25 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.82 7.91 -52.49 -0.42 1.40 16 9 N -0.59 -14.97 2.98 -171.77 -0.51 -15.48 16 10 C 0.13 2.86 6.67 -3.60 -0.02 2.84 16 11 C 0.09 1.75 6.60 -3.59 -0.02 1.73 16 12 N -0.57 -11.09 2.94 -173.20 -0.51 -11.60 16 13 C 0.56 10.24 7.65 -12.18 -0.09 10.15 16 14 O -0.55 -10.82 15.77 5.35 0.08 -10.74 16 15 C 0.10 1.48 6.61 -83.04 -0.55 0.93 16 16 C -0.10 -1.13 9.63 -39.00 -0.38 -1.50 16 17 C -0.08 -0.67 10.16 -39.35 -0.40 -1.07 16 18 C -0.11 -1.07 9.74 -39.01 -0.38 -1.45 16 19 C 0.19 2.52 6.76 -82.96 -0.56 1.96 16 20 C 0.21 2.85 8.03 -156.30 -1.26 1.60 16 21 N -0.26 -3.25 12.21 32.15 0.39 -2.86 16 22 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 23 N -0.22 -2.22 7.90 60.35 0.48 -1.74 16 24 H 0.48 2.68 8.96 -340.36 -3.05 -0.37 16 25 N -0.25 -3.31 12.38 32.17 0.40 -2.91 16 26 N -0.41 -6.30 6.00 -6.35 -0.04 -6.34 16 27 C 0.05 0.95 6.13 -3.37 -0.02 0.93 16 28 C 0.16 3.78 5.62 -3.37 -0.02 3.76 16 29 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 32 H 0.08 1.49 7.00 -51.93 -0.36 1.12 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.15 1.61 7.65 -52.49 -0.40 1.21 16 35 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.15 1.15 7.87 -52.49 -0.41 0.74 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.14 2.64 3.88 -89.80 -0.35 2.30 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 2.64 5.82 -51.93 -0.30 2.33 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -34.03 339.79 -9.07 -43.10 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.96 Total: -0.71 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -3.93 Total: 12.79 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: 1.65 Total: -65.82 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.03 -9.07 -43.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592678491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.388 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds