Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 117.00225 * 2 1 4 4 O 1.20832 * 119.99666 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00305 * 180.02562 * 3 2 1 6 6 N 1.46509 * 109.47115 * 180.02562 * 5 3 2 7 7 C 1.37091 * 119.99640 * 264.86649 * 6 5 3 8 8 H 1.08002 * 119.99976 * 201.99285 * 7 6 5 9 9 C 1.38954 * 120.00374 * 21.98639 * 7 6 5 10 10 N 1.31406 * 119.99720 * 12.25815 * 9 7 6 11 11 Si 1.86794 * 119.99940 * 192.25654 * 9 7 6 12 12 H 1.48503 * 109.47567 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47070 * 120.00506 * 11 9 7 14 14 H 1.48501 * 109.47247 * 240.00002 * 11 9 7 15 15 C 1.34774 * 120.00015 * 84.86488 * 6 5 3 16 16 O 1.21296 * 119.99942 * 5.15560 * 15 6 5 17 17 C 1.50697 * 119.99896 * 185.15345 * 15 6 5 18 18 H 1.08995 * 110.80438 * 30.04368 * 17 15 6 19 19 C 1.54998 * 110.93750 * 266.39007 * 17 15 6 20 20 O 1.44382 * 103.48878 * 204.76257 * 19 17 15 21 21 C 1.44050 * 106.97987 * 40.14360 * 20 19 17 22 22 H 1.08998 * 109.99127 * 92.76497 * 21 20 19 23 23 C 1.52999 * 109.92823 * 214.02209 * 21 20 19 24 24 C 1.53004 * 109.46950 * 292.66843 * 23 21 20 25 25 C 1.50697 * 109.47217 * 179.97438 * 24 23 21 26 26 O 1.20827 * 120.00091 * 359.97438 * 25 24 23 27 27 O 1.34233 * 119.99961 * 179.97438 * 25 24 23 28 28 C 1.54103 * 107.13557 * 333.37890 * 21 20 19 29 29 H 1.09006 * 109.46891 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46993 * 299.99107 * 1 2 3 31 31 H 1.08992 * 109.47446 * 59.99715 * 1 2 3 32 32 H 1.08997 * 109.47667 * 59.99974 * 5 3 2 33 33 H 1.09005 * 109.47110 * 300.00049 * 5 3 2 34 34 H 0.97000 * 120.00108 * 180.02562 * 10 9 7 35 35 H 1.08997 * 110.61719 * 323.26598 * 19 17 15 36 36 H 1.08994 * 110.61461 * 86.10974 * 19 17 15 37 37 H 1.09006 * 109.46891 * 52.66249 * 23 21 20 38 38 H 1.08991 * 109.47349 * 172.66532 * 23 21 20 39 39 H 1.09001 * 109.46437 * 299.99677 * 24 23 21 40 40 H 1.09000 * 109.46903 * 59.99293 * 24 23 21 41 41 H 0.96698 * 116.99628 * 179.97438 * 27 25 24 42 42 H 1.09008 * 110.48724 * 243.39142 * 28 21 20 43 43 H 1.08998 * 110.49156 * 120.87774 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2774 3.3077 -1.1821 8 1 4.9043 4.1871 -1.1844 9 6 3.7706 2.8127 -2.3775 10 7 2.8241 1.9013 -2.3625 11 14 4.4347 3.4430 -4.0056 12 1 5.4881 4.4582 -3.7510 13 1 5.0132 2.3123 -4.7752 14 1 3.3311 4.0590 -4.7853 15 6 4.0730 3.3549 1.1630 16 8 3.9027 2.7761 2.2153 17 6 4.3868 4.8288 1.1560 18 1 4.0059 5.3014 0.2506 19 6 5.9101 5.0716 1.3078 20 8 5.9851 6.3988 1.8713 21 6 4.9293 6.5024 2.8458 22 1 5.3051 6.2320 3.8325 23 6 4.3790 7.9298 2.8687 24 6 5.4486 8.8800 3.4109 25 6 4.9069 10.2861 3.4329 26 8 3.7810 10.5058 3.0534 27 8 5.6751 11.2945 3.8742 28 6 3.8207 5.5202 2.4202 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.9558 0.7810 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 2.4706 1.5554 -3.1969 35 1 6.3494 4.3409 1.9868 36 1 6.4031 5.0361 0.3364 37 1 4.1054 8.2300 1.8571 38 1 3.4987 7.9696 3.5101 39 1 5.7221 8.5798 4.4224 40 1 6.3289 8.8401 2.7694 41 1 5.2841 12.1789 3.8692 42 1 2.9039 6.0597 2.1818 43 1 3.6376 4.7875 3.2061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593850685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -253.689166 kcal Electronic energy + Delta-G solvation = -29093.802013 eV Core-core repulsion = 24718.680256 eV Total energy + Delta-G solvation = -4375.121757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42509 -39.83503 -39.14756 -37.85596 -36.34279 -35.46008 -34.62870 -33.69825 -31.77772 -31.59781 -29.20249 -28.20187 -26.28557 -24.91101 -24.69296 -22.50122 -21.31383 -20.65165 -20.07571 -19.18550 -18.21880 -17.39964 -16.67478 -16.65675 -16.53351 -16.35070 -15.49542 -15.33565 -15.30121 -15.04387 -14.84323 -14.28862 -14.10738 -13.66698 -13.44771 -13.25813 -12.99552 -12.73895 -12.49960 -12.33227 -11.93243 -11.77550 -11.70224 -11.53666 -11.33883 -11.30279 -11.20250 -10.95825 -10.86980 -10.69827 -10.68201 -10.55818 -10.39281 -10.09858 -9.82690 -9.60324 -9.43721 -9.07618 -8.67548 -7.99282 -6.56047 -4.12940 2.07602 2.89952 3.02512 3.14671 3.18252 3.38782 3.69008 3.91465 4.01879 4.08113 4.60840 4.67950 4.86709 4.93798 4.97183 5.07610 5.37204 5.40451 5.49118 5.60232 5.63468 5.68919 5.76724 5.80060 5.92186 5.94108 6.06011 6.09794 6.16274 6.26741 6.28614 6.36223 6.41601 6.46231 6.60431 6.65066 7.13005 7.25481 7.43990 7.55934 7.73534 8.15950 8.90103 9.10242 9.27457 9.66923 10.51056 Molecular weight = 329.14amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.003205 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.336183 B = 8734.486767 C = 9705.038553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.376 6.376 3 C 0.488 3.512 4 O -0.502 6.502 5 C 0.158 3.842 6 N -0.427 5.427 7 C -0.334 4.334 8 H 0.104 0.896 9 C 0.039 3.961 10 N -0.873 5.873 11 Si 0.930 3.070 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.281 1.281 15 C 0.481 3.519 16 O -0.600 6.600 17 C -0.122 4.122 18 H 0.107 0.893 19 C 0.067 3.933 20 O -0.377 6.377 21 C 0.080 3.920 22 H 0.070 0.930 23 C -0.107 4.107 24 C -0.111 4.111 25 C 0.477 3.523 26 O -0.517 6.517 27 O -0.521 6.521 28 C -0.138 4.138 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.273 0.727 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.407 0.593 42 H 0.076 0.924 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 6.655 6.641 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.294 6.294 3 C 0.329 3.671 4 O -0.387 6.387 5 C 0.032 3.968 6 N -0.145 5.145 7 C -0.461 4.461 8 H 0.122 0.878 9 C -0.165 4.165 10 N -0.511 5.511 11 Si 0.756 3.244 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.207 1.207 15 C 0.270 3.730 16 O -0.486 6.486 17 C -0.144 4.144 18 H 0.125 0.875 19 C -0.010 4.010 20 O -0.297 6.297 21 C 0.022 3.978 22 H 0.088 0.912 23 C -0.145 4.145 24 C -0.149 4.149 25 C 0.320 3.680 26 O -0.405 6.405 27 O -0.333 6.333 28 C -0.176 4.176 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.132 0.868 41 H 0.266 0.734 42 H 0.095 0.905 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.007 6.388 6.826 10.172 hybrid contribution -0.654 0.780 -1.160 1.543 sum 3.353 7.168 5.666 9.733 Atomic orbital electron populations 1.22919 0.78754 1.01760 1.01593 1.86449 1.21626 1.35521 1.85756 1.23847 0.92214 0.80543 0.70488 1.90509 1.66496 1.36373 1.45289 1.20424 0.87276 0.85595 1.03493 1.43338 1.57088 1.08057 1.05968 1.19692 1.30183 1.13546 0.82712 0.87842 1.25303 0.94414 0.96675 1.00153 1.69670 1.23883 1.29214 1.28351 0.85812 0.78770 0.78774 0.81028 1.19071 1.20431 1.20698 1.19814 0.81540 0.88021 0.83637 1.90521 1.56878 1.69810 1.31437 1.22550 0.96678 0.94979 1.00181 0.87459 1.23416 0.94768 0.83853 0.99008 1.88842 1.52092 1.32515 1.56219 1.22777 0.87909 0.94315 0.92807 0.91207 1.21676 0.96969 0.92415 1.03401 1.21407 1.01672 0.86644 1.05130 1.23758 0.83437 0.88213 0.72568 1.90736 1.20422 1.85070 1.44239 1.84560 1.49341 1.20592 1.78787 1.22911 0.98178 0.98124 0.98343 0.89639 0.93212 0.92653 0.85948 0.90106 0.91609 0.91967 0.88301 0.89936 0.89850 0.87706 0.86810 0.73440 0.90516 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.06 10.56 -39.26 -0.41 -8.47 16 3 C 0.49 11.95 5.98 36.00 0.22 12.17 16 4 O -0.50 -13.80 15.61 -18.76 -0.29 -14.09 16 5 C 0.16 3.70 5.19 -5.19 -0.03 3.67 16 6 N -0.43 -10.31 2.16 -116.09 -0.25 -10.56 16 7 C -0.33 -7.99 8.73 -14.93 -0.13 -8.12 16 8 H 0.10 2.31 6.23 -52.49 -0.33 1.98 16 9 C 0.04 0.94 5.07 -17.47 -0.09 0.86 16 10 N -0.87 -22.01 8.76 55.50 0.49 -21.52 16 11 Si 0.93 18.82 29.57 -169.99 -5.03 13.79 16 12 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 13 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 14 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 15 C 0.48 11.18 6.63 -10.99 -0.07 11.10 16 16 O -0.60 -15.08 15.32 5.54 0.08 -14.99 16 17 C -0.12 -2.37 2.54 -89.76 -0.23 -2.59 16 18 H 0.11 2.18 6.88 -51.93 -0.36 1.82 16 19 C 0.07 1.11 7.09 38.21 0.27 1.38 16 20 O -0.38 -5.84 10.86 -35.23 -0.38 -6.22 16 21 C 0.08 1.11 3.42 -26.16 -0.09 1.02 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 C -0.11 -1.31 3.99 -26.73 -0.11 -1.42 16 24 C -0.11 -1.11 5.73 -27.88 -0.16 -1.27 16 25 C 0.48 5.22 8.33 36.00 0.30 5.52 16 26 O -0.52 -7.40 16.74 -18.75 -0.31 -7.72 16 27 O -0.52 -4.35 13.42 -39.26 -0.53 -4.87 16 28 C -0.14 -2.33 6.17 -25.20 -0.16 -2.49 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 31 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 32 H 0.12 2.84 6.54 -51.93 -0.34 2.50 16 33 H 0.08 1.78 7.51 -51.93 -0.39 1.39 16 34 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.10 1.57 7.79 -51.93 -0.40 1.16 16 37 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.56 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.11 1.12 7.91 -51.93 -0.41 0.70 16 41 H 0.41 1.72 9.10 45.56 0.41 2.14 16 42 H 0.08 1.26 7.70 -51.92 -0.40 0.86 16 43 H 0.09 1.70 6.86 -51.93 -0.36 1.35 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -32.90 363.52 -5.44 -38.34 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.08 Total: 9.16 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 0.79 Total: 21.67 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.24 Total: -32.08 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -1.85 Total: -56.36 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.90 -5.44 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593850685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.344 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -253.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds