Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00496 * 2 1 4 4 H 1.48491 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46993 * 300.00077 * 3 2 1 6 6 H 1.48498 * 109.47101 * 59.99426 * 3 2 1 7 7 C 1.38812 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00396 * 191.86546 * 7 2 1 9 9 N 1.36939 * 119.99733 * 11.58794 * 7 2 1 10 10 C 1.46962 * 120.59398 * 33.76703 * 9 7 2 11 11 C 1.53812 * 108.39672 * 124.75517 * 10 9 7 12 12 N 1.46969 * 108.57763 * 49.64237 * 11 10 9 13 13 C 1.34773 * 120.59423 * 124.67159 * 12 11 10 14 14 O 1.21521 * 119.99807 * 190.77644 * 13 12 11 15 15 C 1.48176 * 120.00215 * 10.76667 * 13 12 11 16 16 C 1.39111 * 119.66795 * 187.16911 * 15 13 12 17 17 C 1.39685 * 118.91877 * 179.77642 * 16 15 13 18 18 C 1.48457 * 120.87036 * 180.25583 * 17 16 15 19 19 N 1.34055 * 126.67341 * 359.92678 * 18 17 16 20 20 N 1.28978 * 107.26991 * 179.82963 * 19 18 17 21 21 N 1.28728 * 108.94376 * 0.43701 * 20 19 18 22 22 H 0.96999 * 125.34287 * 179.74183 * 21 20 19 23 23 N 1.28876 * 109.31953 * 359.72098 * 21 20 19 24 24 C 1.39690 * 118.26429 * 0.49032 * 17 16 15 25 25 C 1.38335 * 119.21596 * 359.75018 * 24 17 16 26 26 N 1.31564 * 121.02574 * 359.97438 * 25 24 17 27 27 C 1.46966 * 118.80878 * 304.64174 * 12 11 10 28 28 C 1.46963 * 120.59462 * 214.04355 * 9 7 2 29 29 H 0.97003 * 119.99343 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.61032 * 244.54299 * 10 9 7 31 31 H 1.08997 * 109.61020 * 5.05581 * 10 9 7 32 32 H 1.08999 * 109.74847 * 289.85201 * 11 10 9 33 33 H 1.08997 * 109.53470 * 169.30226 * 11 10 9 34 34 H 1.08000 * 120.54415 * 359.97438 * 16 15 13 35 35 H 1.08005 * 120.39093 * 179.72840 * 24 17 16 36 36 H 1.07997 * 119.48453 * 179.97438 * 25 24 17 37 37 H 1.09001 * 109.61240 * 295.48364 * 27 12 11 38 38 H 1.09005 * 109.60828 * 174.97330 * 27 12 11 39 39 H 1.09007 * 109.61147 * 354.95595 * 28 9 7 40 40 H 1.09006 * 109.60769 * 115.45868 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0729 -1.2121 0.1928 9 7 1.3464 -2.3761 -0.2372 10 6 0.2047 -2.4158 -1.1617 11 6 0.4859 -3.4812 -2.2348 12 7 0.8986 -4.7227 -1.5653 13 6 0.2453 -5.8780 -1.7993 14 8 0.4615 -6.8501 -1.1028 15 6 -0.7367 -5.9629 -2.9057 16 6 -1.5152 -7.1069 -3.0491 17 6 -2.4393 -7.1683 -4.0948 18 6 -3.2962 -8.3657 -4.2847 19 7 -3.2995 -9.4753 -3.5325 20 7 -4.1870 -10.2701 -4.0266 21 7 -4.7254 -9.7093 -5.0527 22 1 -5.4196 -10.1002 -5.6060 23 7 -4.1976 -8.5469 -5.2292 24 6 -2.5327 -6.0756 -4.9601 25 6 -1.7181 -4.9773 -4.7512 26 7 -0.8614 -4.9485 -3.7531 27 6 2.0368 -4.6818 -0.6365 28 6 1.7591 -3.6175 0.4323 29 1 -0.4849 0.8401 -0.0004 30 1 -0.7010 -2.6749 -0.6135 31 1 0.0829 -1.4413 -1.6346 32 1 1.2836 -3.1385 -2.8939 33 1 -0.4190 -3.6618 -2.8150 34 1 -1.4091 -7.9327 -2.3613 35 1 -3.2325 -6.0884 -5.7827 36 1 -1.7864 -4.1304 -5.4177 37 1 2.9449 -4.4245 -1.1817 38 1 2.1560 -5.6554 -0.1610 39 1 2.6641 -3.4369 1.0125 40 1 0.9614 -3.9603 1.0914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = 183.711017 kcal Electronic energy + Delta-G solvation = -27254.507550 eV Core-core repulsion = 23302.540061 eV Total energy + Delta-G solvation = -3951.967489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.88172 -40.82559 -38.92428 -36.71838 -35.14199 -34.41061 -33.74266 -32.04722 -31.73021 -30.96592 -29.96806 -27.06551 -25.75751 -25.18426 -24.32715 -23.28105 -22.65645 -22.50818 -20.68930 -19.77127 -18.99747 -17.55977 -17.46174 -17.08604 -16.21975 -16.10346 -15.46124 -15.18053 -14.91426 -14.68970 -14.56058 -14.13598 -13.86126 -13.58506 -13.42701 -13.24937 -13.07213 -12.72979 -12.30408 -12.20575 -11.95493 -11.68630 -11.52121 -11.49784 -11.27751 -10.84700 -10.62686 -10.44585 -10.22531 -10.15197 -9.93830 -9.77434 -9.71650 -9.41299 -8.79727 -8.49888 -8.15094 -6.55250 -5.79200 -3.30113 0.17335 0.60637 0.80543 1.79781 1.93360 2.90246 3.09676 3.35514 3.36937 3.44083 3.46418 3.74652 3.79133 4.10317 4.48697 4.59647 4.69040 4.72670 4.78748 5.02646 5.11190 5.39363 5.50720 5.53533 5.55550 5.78589 5.93768 5.95623 6.00248 6.16132 6.20326 6.25179 6.46613 6.58206 6.76002 6.88211 7.11379 7.33608 7.53815 7.56734 7.71740 7.78466 7.96861 8.46448 8.49096 9.20170 9.80390 10.41168 11.27804 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.002650 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.408982 B =10561.940016 C =11253.583031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.160 3.840 11 C 0.052 3.948 12 N -0.570 5.570 13 C 0.560 3.440 14 O -0.548 6.548 15 C 0.096 3.904 16 C -0.074 4.074 17 C 0.019 3.981 18 C 0.217 3.783 19 N -0.256 5.256 20 N -0.045 5.045 21 N -0.225 5.225 22 H 0.477 0.523 23 N -0.285 5.285 24 C -0.118 4.118 25 C 0.097 3.903 26 N -0.427 5.427 27 C 0.093 3.907 28 C 0.132 3.868 29 H 0.254 0.746 30 H 0.019 0.981 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 -15.591 -14.601 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.033 3.967 11 C -0.072 4.072 12 N -0.300 5.300 13 C 0.345 3.655 14 O -0.427 6.427 15 C -0.042 4.042 16 C -0.097 4.097 17 C 0.008 3.992 18 C -0.063 4.063 19 N -0.129 5.129 20 N -0.040 5.040 21 N -0.072 5.072 22 H 0.332 0.668 23 N -0.137 5.137 24 C -0.140 4.140 25 C -0.062 4.062 26 N -0.139 5.139 27 C -0.031 4.031 28 C 0.005 3.995 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.167 0.833 36 H 0.191 0.809 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.076 -15.810 -13.910 22.931 hybrid contribution -0.552 0.474 -0.619 0.955 sum -9.628 -15.336 -14.529 23.216 Atomic orbital electron populations 1.69995 1.05321 1.25462 1.53838 1.25238 0.95381 0.98529 1.00149 0.86196 0.79371 0.83772 0.77257 1.20186 1.21518 1.21682 1.19211 0.91033 0.83855 1.44343 0.91760 1.44013 1.35815 1.04092 1.47642 1.21292 0.88997 0.97050 0.89326 1.23842 1.02786 0.83643 0.96883 1.47931 1.30847 1.08360 1.42849 1.17794 0.80993 0.83624 0.83058 1.90749 1.66148 1.37258 1.48524 1.21310 0.96852 0.90265 0.95740 1.22105 0.92142 0.99123 0.96333 1.17418 0.94996 0.89812 0.96970 1.23412 0.96451 0.95623 0.90775 1.76188 1.13162 1.00663 1.22923 1.78980 1.05100 1.21155 0.98752 1.47761 1.28972 1.09425 1.21001 0.66838 1.74905 1.12141 1.02526 1.24166 1.22359 0.99727 0.92824 0.99106 1.23037 0.91203 0.97538 0.94373 1.67901 1.18330 1.25323 1.02394 1.22310 0.87378 1.01011 0.92394 1.21294 0.98580 0.87193 0.92445 0.93608 0.96251 0.88776 0.92263 0.85258 0.82184 0.83342 0.80949 0.91654 0.89999 0.91550 0.95847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 11.26 55.49 0.62 -25.19 16 2 C 0.01 0.17 5.01 -17.43 -0.09 0.08 16 3 Si 0.90 21.35 29.57 -169.99 -5.03 16.32 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.89 9.54 -15.06 -0.14 -7.04 16 8 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 9 N -0.59 -14.88 2.94 -171.77 -0.50 -15.39 16 10 C 0.16 3.78 5.48 -3.37 -0.02 3.76 16 11 C 0.05 1.00 6.04 -3.36 -0.02 0.98 16 12 N -0.57 -10.98 2.95 -173.20 -0.51 -11.49 16 13 C 0.56 10.37 7.64 -12.18 -0.09 10.28 16 14 O -0.55 -11.17 15.79 5.35 0.08 -11.09 16 15 C 0.10 1.47 6.58 -83.06 -0.55 0.92 16 16 C -0.07 -1.00 9.32 -38.72 -0.36 -1.36 16 17 C 0.02 0.21 5.91 -104.60 -0.62 -0.40 16 18 C 0.22 2.36 7.97 -156.30 -1.25 1.12 16 19 N -0.26 -3.06 12.33 32.16 0.40 -2.67 16 20 N -0.04 -0.42 13.47 60.35 0.81 0.39 16 21 N -0.23 -1.40 7.90 60.35 0.48 -0.92 16 22 H 0.48 0.51 8.96 -340.37 -3.05 -2.54 16 23 N -0.29 -2.43 12.17 32.17 0.39 -2.04 16 24 C -0.12 -1.06 9.80 -39.00 -0.38 -1.44 16 25 C 0.10 0.95 11.17 -17.63 -0.20 0.75 16 26 N -0.43 -5.86 6.13 -9.88 -0.06 -5.92 16 27 C 0.09 1.77 6.60 -3.60 -0.02 1.75 16 28 C 0.13 2.86 6.67 -3.60 -0.02 2.84 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 2.43 6.24 -51.93 -0.32 2.11 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.13 2.26 4.08 -81.86 -0.33 1.93 16 34 H 0.16 2.24 7.57 -52.49 -0.40 1.84 16 35 H 0.15 0.94 7.96 -52.48 -0.42 0.52 16 36 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.50 7.01 -51.93 -0.36 1.13 16 39 H 0.07 1.36 7.93 -51.92 -0.41 0.95 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -34.35 340.08 -8.91 -43.26 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.96 Total: -2.63 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: -3.76 Total: 12.23 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: 1.63 Total: -63.22 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.35 -8.91 -43.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.975 kcal (2) G-P(sol) polarization free energy of solvation -34.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 192.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds