Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00119 * 2 1 4 4 H 1.48502 * 109.47184 * 269.99774 * 3 2 1 5 5 H 1.48501 * 109.47323 * 29.99960 * 3 2 1 6 6 H 1.48503 * 109.47031 * 149.99998 * 3 2 1 7 7 C 1.38817 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00602 * 189.09636 * 7 2 1 9 9 N 1.36946 * 119.99468 * 9.10138 * 7 2 1 10 10 C 1.48140 * 127.84157 * 15.56908 * 9 7 2 11 11 C 1.54389 * 104.61875 * 140.41416 * 10 9 7 12 12 H 1.08994 * 117.62211 * 242.76894 * 11 10 9 13 13 C 1.54286 * 104.95737 * 23.86755 * 11 10 9 14 14 H 1.08997 * 121.82210 * 222.17301 * 13 11 10 15 15 C 1.48145 * 127.83329 * 195.57374 * 9 7 2 16 16 C 1.53002 * 59.72300 * 114.13519 * 13 11 10 17 17 H 1.08997 * 117.40998 * 252.33824 * 16 13 11 18 18 N 1.46504 * 117.44043 * 107.64641 * 16 13 11 19 19 C 1.34772 * 120.00191 * 135.76840 * 18 16 13 20 20 O 1.21629 * 119.99575 * 359.97438 * 19 18 16 21 21 C 1.47306 * 120.00088 * 180.02562 * 19 18 16 22 22 C 1.37824 * 126.53153 * 359.97438 * 21 19 18 23 23 N 1.34781 * 108.25463 * 179.75683 * 22 21 19 24 24 H 0.96998 * 125.36529 * 180.23620 * 23 22 21 25 25 C 1.37306 * 109.26788 * 0.40497 * 23 22 21 26 26 C 1.48006 * 125.76040 * 179.85780 * 25 23 22 27 27 N 1.34180 * 126.69777 * 179.66695 * 26 25 23 28 28 N 1.28976 * 107.25390 * 179.97438 * 27 26 25 29 29 N 1.28716 * 108.99028 * 0.02562 * 28 27 26 30 30 H 0.97002 * 125.32729 * 180.02562 * 29 28 27 31 31 N 1.28873 * 109.35674 * 359.97438 * 29 28 27 32 32 C 1.35696 * 108.47697 * 359.59463 * 25 23 22 33 33 H 0.97006 * 119.99807 * 0.02562 * 1 2 3 34 34 H 1.09006 * 110.40605 * 21.63398 * 10 9 7 35 35 H 1.08995 * 110.40735 * 259.20512 * 10 9 7 36 36 H 1.09004 * 110.40526 * 338.36460 * 15 9 7 37 37 H 1.08991 * 110.40806 * 100.68127 * 15 9 7 38 38 H 0.97002 * 119.99800 * 315.75638 * 18 16 13 39 39 H 1.07997 * 125.86928 * 0.02562 * 22 21 19 40 40 H 1.08004 * 126.47307 * 180.27910 * 32 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0800 -1.2081 0.1484 9 7 1.3384 -2.3807 -0.1865 10 6 -0.0343 -2.5711 -0.7101 11 6 0.0637 -3.8174 -1.6162 12 1 -0.1485 -3.6885 -2.6775 13 6 1.2860 -4.5977 -1.0893 14 1 2.0095 -5.0559 -1.7636 15 6 1.8195 -3.7546 0.0889 16 6 -0.1185 -5.1932 -0.9721 17 1 -0.5676 -5.2277 0.0204 18 7 -0.4528 -6.3132 -1.8554 19 6 -1.1034 -7.3870 -1.3654 20 8 -1.4126 -7.4263 -0.1897 21 6 -1.4390 -8.5133 -2.2534 22 6 -1.1547 -8.6105 -3.5985 23 7 -1.6213 -9.7938 -4.0443 24 1 -1.5507 -10.1177 -4.9558 25 6 -2.2158 -10.4667 -3.0055 26 6 -2.8517 -11.8006 -3.0902 27 7 -3.4318 -12.4774 -2.0874 28 7 -3.8607 -13.5915 -2.5756 29 7 -3.5742 -13.6371 -3.8296 30 1 -3.7886 -14.3702 -4.4277 31 7 -2.9588 -12.5562 -4.1668 32 6 -2.1168 -9.7050 -1.8869 33 1 -0.4850 0.8401 -0.0004 34 1 -0.3433 -1.7022 -1.2912 35 1 -0.7317 -2.7499 0.1081 36 1 2.9090 -3.7785 0.1107 37 1 1.4132 -4.1174 1.0329 38 1 -0.2060 -6.2818 -2.7930 39 1 -0.6419 -7.8682 -4.1922 40 1 -2.4839 -9.9581 -0.9032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = 202.178148 kcal Electronic energy + Delta-G solvation = -25872.175668 eV Core-core repulsion = 21921.008974 eV Total energy + Delta-G solvation = -3951.166694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.89659 -41.69376 -39.44152 -38.02510 -34.83622 -34.39302 -33.82011 -32.65210 -31.62430 -30.34596 -29.36964 -27.10111 -25.73646 -25.04109 -24.42276 -23.43373 -21.51416 -21.04546 -20.37575 -19.74215 -19.52759 -19.22730 -18.51507 -17.61205 -16.83697 -16.40650 -16.04929 -15.15166 -15.10404 -14.69040 -14.42880 -14.11422 -14.04363 -13.77116 -13.40400 -13.19586 -12.74822 -12.70074 -12.60473 -12.14597 -11.84852 -11.60883 -11.51105 -11.45802 -11.43113 -10.96103 -10.81440 -10.34495 -10.16084 -10.10569 -9.82773 -9.69682 -9.38550 -9.14148 -8.69994 -8.58410 -8.22807 -6.83293 -5.76791 -3.10893 0.48412 1.00329 1.57405 1.74333 2.42144 2.49101 3.12774 3.39749 3.44220 3.46249 3.47688 3.50704 3.88921 4.39976 4.49974 4.55282 4.70819 4.75743 4.97280 5.04534 5.22471 5.41914 5.43207 5.49642 5.62486 5.73040 5.87971 5.88915 5.95836 6.19930 6.22439 6.32571 6.37457 6.58203 6.75314 6.82517 6.91327 6.95566 7.39705 7.57024 7.68167 7.70927 7.74901 8.23837 8.44069 9.14041 9.76702 10.54115 11.37565 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.049538 B = 0.001778 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.086629 B =15746.036870 C =15875.641180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.180 4.180 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.102 0.898 15 C 0.155 3.845 16 C 0.100 3.900 17 H 0.132 0.868 18 N -0.696 5.696 19 C 0.589 3.411 20 O -0.536 6.536 21 C -0.217 4.217 22 C 0.072 3.928 23 N -0.524 5.524 24 H 0.425 0.575 25 C 0.054 3.946 26 C 0.254 3.746 27 N -0.255 5.255 28 N -0.043 5.043 29 N -0.226 5.226 30 H 0.476 0.524 31 N -0.311 5.311 32 C -0.057 4.057 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.026 0.974 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.395 0.605 39 H 0.185 0.815 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.363 -26.332 -14.623 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.202 4.202 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.120 0.880 15 C 0.029 3.971 16 C -0.006 4.006 17 H 0.150 0.850 18 N -0.344 5.344 19 C 0.377 3.623 20 O -0.413 6.413 21 C -0.227 4.227 22 C -0.069 4.069 23 N -0.118 5.118 24 H 0.263 0.737 25 C -0.058 4.058 26 C -0.026 4.026 27 N -0.128 5.128 28 N -0.038 5.038 29 N -0.072 5.072 30 H 0.330 0.670 31 N -0.163 5.163 32 C -0.085 4.085 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.229 0.771 39 H 0.202 0.798 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.941 -26.702 -13.612 30.554 hybrid contribution 0.719 0.544 -1.794 2.008 sum -5.222 -26.157 -15.406 30.803 Atomic orbital electron populations 1.69899 1.05032 1.25400 1.55768 1.24900 0.95643 0.97958 1.01815 0.86109 0.78710 0.83306 0.77564 1.21579 1.21666 1.20547 1.19001 0.90816 0.82312 1.43307 0.90531 1.45180 1.13354 1.00001 1.73168 1.21066 0.86934 0.92436 0.93720 1.24639 1.02389 0.92636 1.00503 0.87980 1.24358 0.90531 1.02527 1.03018 0.88010 1.21118 0.97172 0.85793 0.93065 1.21825 0.98264 0.84748 0.95785 0.84996 1.45187 1.58816 1.17945 1.12433 1.17270 0.77192 0.80956 0.86890 1.90805 1.53726 1.80130 1.16657 1.19686 1.11588 0.98234 0.93218 1.22454 1.00760 0.88605 0.95058 1.41490 1.44086 1.15082 1.11185 0.73716 1.16365 1.09712 0.90497 0.89254 1.22502 0.99417 0.95212 0.85425 1.76211 1.12757 0.99041 1.24841 1.78976 1.16215 1.15272 0.93348 1.47633 1.35938 1.15167 1.08482 0.66958 1.74934 1.17907 0.97108 1.26376 1.21034 0.98213 0.91488 0.97723 0.93550 0.89122 0.95568 0.93087 0.95382 0.77149 0.79812 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 10.86 55.49 0.60 -26.20 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.86 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.29 10.35 -15.05 -0.16 -6.45 16 8 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.22 3.38 -168.86 -0.57 -15.79 16 10 C 0.18 4.42 5.70 -2.41 -0.01 4.41 16 11 C -0.18 -3.33 7.06 -89.22 -0.63 -3.96 16 12 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 13 C -0.18 -3.22 7.06 -89.22 -0.63 -3.85 16 14 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.29 7.04 -2.41 -0.02 3.27 16 16 C 0.10 1.67 5.98 -67.93 -0.41 1.26 16 17 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 18 N -0.70 -9.09 5.55 -54.91 -0.30 -9.39 16 19 C 0.59 8.53 7.81 -12.58 -0.10 8.43 16 20 O -0.54 -10.14 16.49 5.25 0.09 -10.05 16 21 C -0.22 -2.38 6.14 -104.96 -0.64 -3.02 16 22 C 0.07 0.49 11.44 -16.41 -0.19 0.30 16 23 N -0.52 -3.27 6.01 -9.19 -0.06 -3.32 16 24 H 0.42 1.44 8.96 -40.82 -0.37 1.07 16 25 C 0.05 0.50 7.08 -82.32 -0.58 -0.09 16 26 C 0.25 2.39 8.20 -156.25 -1.28 1.11 16 27 N -0.26 -2.71 12.52 32.10 0.40 -2.30 16 28 N -0.04 -0.35 13.46 60.35 0.81 0.46 16 29 N -0.23 -1.16 7.90 60.35 0.48 -0.68 16 30 H 0.48 0.09 8.96 -340.34 -3.05 -2.96 16 31 N -0.31 -2.23 12.41 32.11 0.40 -1.83 16 32 C -0.06 -0.63 10.59 -39.09 -0.41 -1.05 16 33 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.39 3.71 7.74 -40.82 -0.32 3.40 16 39 H 0.18 0.56 7.44 -52.49 -0.39 0.17 16 40 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -36.75 351.26 -9.97 -46.72 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.93 Total: 0.12 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -5.15 Total: 0.11 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 1.76 Total: -59.06 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.75 -9.97 -46.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.900 kcal (2) G-P(sol) polarization free energy of solvation -36.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds