Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99927 * 2 1 4 4 H 1.48506 * 109.46842 * 269.99897 * 3 2 1 5 5 H 1.48493 * 109.47206 * 29.99591 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00178 * 3 2 1 7 7 C 1.38950 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99935 * 359.97438 * 7 2 1 9 9 N 1.37101 * 119.99670 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99748 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99636 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99970 * 179.97438 * 10 9 7 13 13 N 1.46494 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99871 * 179.97438 * 13 12 10 15 15 O 1.21595 * 120.00110 * 5.07167 * 14 13 12 16 16 N 1.34774 * 120.00251 * 185.07422 * 14 13 12 17 17 C 1.46923 * 120.63407 * 174.96203 * 16 14 13 18 18 C 1.53189 * 108.77974 * 233.58622 * 17 16 14 19 19 C 1.53042 * 109.31049 * 305.36816 * 18 17 16 20 20 C 1.53004 * 109.46107 * 181.38665 * 19 18 17 21 21 H 1.09001 * 109.47368 * 59.96309 * 20 19 18 22 22 O 1.42902 * 109.46790 * 299.96703 * 20 19 18 23 23 C 1.50702 * 109.47306 * 179.97438 * 20 19 18 24 24 O 1.20824 * 120.00108 * 114.99575 * 23 20 19 25 25 O 1.34230 * 119.99510 * 294.99563 * 23 20 19 26 26 C 1.53034 * 109.53269 * 61.36595 * 19 18 17 27 27 C 1.46928 * 120.63009 * 354.93765 * 16 14 13 28 28 H 0.97001 * 120.00146 * 0.02562 * 1 2 3 29 29 H 0.96996 * 119.99632 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47211 * 59.99592 * 12 10 9 31 31 H 1.08997 * 109.46782 * 300.00145 * 12 10 9 32 32 H 0.96998 * 120.00679 * 359.97438 * 13 12 10 33 33 H 1.09003 * 109.58956 * 113.79586 * 17 16 14 34 34 H 1.09000 * 109.70259 * 353.44517 * 17 16 14 35 35 H 1.08996 * 109.50288 * 185.41001 * 18 17 16 36 36 H 1.09001 * 109.52378 * 65.32599 * 18 17 16 37 37 H 1.09000 * 109.45595 * 301.35189 * 19 18 17 38 38 H 0.96705 * 114.00276 * 300.00607 * 22 20 19 39 39 H 0.96701 * 117.00081 * 180.02562 * 25 23 20 40 40 H 1.09004 * 109.49155 * 58.57884 * 26 19 18 41 41 H 1.08996 * 109.50120 * 178.67737 * 26 19 18 42 42 H 1.08996 * 109.58777 * 246.20171 * 27 16 14 43 43 H 1.08998 * 109.58280 * 6.48755 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1386 -0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4209 0.0000 12 6 5.5607 -2.3706 0.0000 13 7 6.0490 -3.7518 0.0006 14 6 7.3741 -3.9981 0.0002 15 8 8.1636 -3.0779 0.0924 16 7 7.8242 -5.2643 -0.1025 17 6 9.2628 -5.5407 -0.2151 18 6 9.5023 -6.4111 -1.4527 19 6 8.6264 -7.6633 -1.3679 20 6 8.8884 -8.5520 -2.5855 21 1 9.9387 -8.8431 -2.6037 22 8 8.5734 -7.8308 -3.7783 23 6 8.0265 -9.7854 -2.5020 24 8 7.1632 -9.9761 -3.3255 25 8 8.2180 -10.6722 -1.5127 26 6 7.1516 -7.2553 -1.3423 27 6 6.8855 -6.3947 -0.1033 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3633 0.0004 30 1 5.9241 -1.8567 0.8899 31 1 5.9240 -1.8568 -0.8900 32 1 5.4187 -4.4891 0.0013 33 1 9.6042 -6.0692 0.6750 34 1 9.8102 -4.6035 -0.3160 35 1 10.5515 -6.7032 -1.4946 36 1 9.2454 -5.8476 -2.3497 37 1 8.8668 -8.2136 -0.4583 38 1 7.6527 -7.5396 -3.8303 39 1 7.6409 -11.4480 -1.5007 40 1 6.9168 -6.6834 -2.2401 41 1 6.5277 -8.1483 -1.3057 42 1 7.0330 -6.9928 0.7959 43 1 5.8623 -6.0198 -0.1291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -198.286925 kcal Electronic energy + Delta-G solvation = -28466.585795 eV Core-core repulsion = 24126.159210 eV Total energy + Delta-G solvation = -4340.426585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26762 -40.34817 -38.79278 -38.20267 -36.88851 -36.17099 -34.62263 -33.87143 -33.12441 -31.82043 -31.40526 -29.08235 -27.63275 -24.95348 -24.11759 -23.74114 -22.02371 -20.98241 -19.78189 -19.56107 -18.91086 -18.65353 -18.11756 -17.90094 -16.75321 -16.23552 -16.18074 -15.75521 -15.58522 -15.46996 -15.01264 -14.66184 -14.55745 -14.32357 -14.11635 -13.78636 -13.54150 -13.19673 -13.12580 -12.93633 -12.58421 -12.43309 -12.27202 -12.16644 -12.06504 -12.03752 -11.62086 -11.40658 -11.24740 -11.16467 -10.93774 -10.65117 -10.40892 -10.08941 -10.04872 -9.71278 -9.06898 -8.78956 -8.58510 -8.31855 -6.42123 -3.94820 1.63757 2.44168 2.58204 2.98928 3.03720 3.11939 3.23147 3.55459 3.65002 3.86731 4.02575 4.02816 4.12167 4.37602 4.53487 4.63882 4.66234 4.83850 4.91359 4.98484 5.12049 5.12971 5.24008 5.37313 5.43525 5.45514 5.59831 5.64193 5.70632 5.78517 5.83958 5.95430 5.98113 6.36689 6.60283 6.89350 6.91199 7.36563 7.43382 7.98183 8.03908 8.42626 8.65875 8.80188 9.28388 9.61737 10.69994 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002418 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.696672 B =11574.944724 C =12381.924906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.581 6.581 12 C 0.124 3.876 13 N -0.726 5.726 14 C 0.710 3.290 15 O -0.595 6.595 16 N -0.631 5.631 17 C 0.131 3.869 18 C -0.124 4.124 19 C -0.113 4.113 20 C 0.126 3.874 21 H 0.139 0.861 22 O -0.529 6.529 23 C 0.449 3.551 24 O -0.506 6.506 25 O -0.514 6.514 26 C -0.141 4.141 27 C 0.114 3.886 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.387 0.613 39 H 0.412 0.588 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.609 -16.901 -1.593 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.465 6.465 12 C -0.004 4.004 13 N -0.385 5.385 14 C 0.411 3.589 15 O -0.474 6.474 16 N -0.369 5.369 17 C 0.008 3.992 18 C -0.163 4.163 19 C -0.132 4.132 20 C 0.065 3.935 21 H 0.157 0.843 22 O -0.335 6.335 23 C 0.291 3.709 24 O -0.393 6.393 25 O -0.326 6.326 26 C -0.179 4.179 27 C -0.010 4.010 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.238 0.762 39 H 0.271 0.729 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.145 -16.577 -1.904 26.935 hybrid contribution -0.906 0.433 0.118 1.011 sum 20.238 -16.144 -1.786 25.950 Atomic orbital electron populations 1.69619 1.05723 1.27839 1.48129 1.25070 0.95536 0.98192 0.97105 0.86669 0.79931 0.83732 0.79161 1.19374 1.19982 1.19178 1.19435 0.78946 0.96789 1.48698 0.86094 1.42117 1.07699 1.06142 1.65363 1.19648 0.88075 0.84865 0.84978 1.90526 1.69269 1.30952 1.55793 1.20818 0.93369 0.82953 1.03265 1.44955 1.05308 1.09308 1.78970 1.15734 0.82627 0.82716 0.77821 1.90896 1.55226 1.42907 1.58356 1.47188 1.07190 1.04198 1.78332 1.21424 0.80175 1.00762 0.96872 1.21934 0.99530 0.95110 0.99692 1.21840 0.96635 0.97024 0.97730 1.21588 0.98973 0.85842 0.87135 0.84347 1.86655 1.34681 1.73051 1.39158 1.24671 0.83225 0.85176 0.77875 1.90774 1.32860 1.75790 1.39922 1.84534 1.62019 1.35495 1.50543 1.22072 0.95399 1.00466 0.99978 1.21568 0.93856 0.87979 0.97554 0.91370 0.79208 0.89799 0.89918 0.75290 0.91705 0.88440 0.90117 0.90263 0.88437 0.76231 0.72910 0.90551 0.90772 0.90934 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.86 13.96 55.50 0.77 -24.09 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.91 27.74 -169.99 -4.71 14.20 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 9 N -0.58 -13.28 5.09 -10.96 -0.06 -13.34 16 10 C 0.44 9.54 7.85 -10.98 -0.09 9.45 16 11 O -0.58 -14.45 15.24 5.55 0.08 -14.36 16 12 C 0.12 2.16 6.16 -5.20 -0.03 2.12 16 13 N -0.73 -11.59 5.44 -66.42 -0.36 -11.95 16 14 C 0.71 10.90 8.30 -86.92 -0.72 10.18 16 15 O -0.59 -10.92 15.79 5.28 0.08 -10.84 16 16 N -0.63 -7.08 2.97 -178.50 -0.53 -7.61 16 17 C 0.13 1.16 6.41 -3.71 -0.02 1.13 16 18 C -0.12 -0.82 5.19 -26.61 -0.14 -0.96 16 19 C -0.11 -0.66 2.03 -90.58 -0.18 -0.84 16 20 C 0.13 0.78 3.30 -27.88 -0.09 0.69 16 21 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 22 O -0.53 -4.33 12.31 -55.14 -0.68 -5.01 16 23 C 0.45 3.36 6.36 36.01 0.23 3.58 16 24 O -0.51 -5.60 17.08 -25.46 -0.43 -6.04 16 25 O -0.51 -2.59 13.42 -39.26 -0.53 -3.12 16 26 C -0.14 -1.02 4.79 -26.61 -0.13 -1.15 16 27 C 0.11 1.02 6.43 -3.71 -0.02 0.99 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.41 6.37 4.89 -40.82 -0.20 6.17 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.03 7.04 -51.93 -0.37 0.67 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.66 7.73 -51.93 -0.40 0.25 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 2.79 7.11 45.56 0.32 3.12 16 39 H 0.41 0.65 9.10 45.56 0.41 1.07 16 40 H 0.08 0.61 6.85 -51.93 -0.36 0.26 16 41 H 0.07 0.52 7.17 -51.93 -0.37 0.15 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.89 5.56 -51.93 -0.29 0.61 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -36.14 356.17 -6.44 -42.58 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -3.99 Total: 16.54 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: -1.45 Total: 17.67 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.17 Total: -56.99 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.47 Total: -39.36 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.14 -6.44 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.708 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds