Wall clock time and date at job start Tue Mar 31 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00507 * 2 1 4 4 H 1.48508 * 109.47101 * 270.00113 * 3 2 1 5 5 H 1.48495 * 109.47128 * 30.00167 * 3 2 1 6 6 H 1.48496 * 109.47129 * 150.00518 * 3 2 1 7 7 C 1.38956 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00098 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99671 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99656 * 179.97438 * 9 7 2 11 11 O 1.21287 * 120.00240 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.46508 * 109.46975 * 180.02562 * 12 10 9 14 14 C 1.34773 * 119.99710 * 180.02562 * 13 12 10 15 15 O 1.21582 * 120.00461 * 4.97571 * 14 13 12 16 16 N 1.34782 * 119.99426 * 184.97875 * 14 13 12 17 17 C 1.46919 * 120.63297 * 354.48490 * 16 14 13 18 18 C 1.53196 * 108.77637 * 233.88458 * 17 16 14 19 19 C 1.53040 * 109.30980 * 305.36572 * 18 17 16 20 20 C 1.53006 * 109.45956 * 181.38828 * 19 18 17 21 21 H 1.08995 * 109.46980 * 184.92973 * 20 19 18 22 22 O 1.42898 * 109.46428 * 304.92816 * 20 19 18 23 23 C 1.50698 * 109.47456 * 64.92952 * 20 19 18 24 24 O 1.20829 * 120.00092 * 245.00711 * 23 20 19 25 25 O 1.34225 * 119.99891 * 64.99667 * 23 20 19 26 26 C 1.53040 * 109.54096 * 61.36324 * 19 18 17 27 27 C 1.46934 * 120.62815 * 174.76304 * 16 14 13 28 28 H 0.97002 * 119.99253 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00462 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.47391 * 60.00690 * 12 10 9 31 31 H 1.08997 * 109.47587 * 300.00053 * 12 10 9 32 32 H 0.97000 * 120.00143 * 359.97438 * 13 12 10 33 33 H 1.08996 * 109.58776 * 353.66660 * 17 16 14 34 34 H 1.08999 * 109.58790 * 114.09669 * 17 16 14 35 35 H 1.08996 * 109.49663 * 185.41666 * 18 17 16 36 36 H 1.08996 * 109.49419 * 65.31371 * 18 17 16 37 37 H 1.09004 * 109.44796 * 301.34633 * 19 18 17 38 38 H 0.96702 * 114.00405 * 60.01007 * 22 20 19 39 39 H 0.96707 * 116.99959 * 180.02562 * 25 23 20 40 40 H 1.09004 * 109.49633 * 178.68477 * 26 19 18 41 41 H 1.09000 * 109.49489 * 58.58830 * 26 19 18 42 42 H 1.08995 * 109.58666 * 245.90732 * 27 16 14 43 43 H 1.09000 * 109.58318 * 6.33068 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4002 5 1 1.4458 2.6526 0.7000 6 1 3.5458 1.4399 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2099 -3.5580 -0.0021 12 6 1.2434 -4.8630 -0.0010 13 7 2.1954 -5.9766 -0.0017 14 6 1.7460 -7.2472 -0.0019 15 8 0.5543 -7.4706 -0.0928 16 7 2.6177 -8.2702 0.0987 17 6 4.0660 -8.0235 0.0880 18 6 4.7051 -8.8865 -1.0045 19 6 4.3186 -10.3507 -0.7837 20 6 4.9833 -11.2202 -1.8529 21 1 4.6395 -12.2494 -1.7496 22 8 4.6360 -10.7297 -3.1492 23 6 6.4797 -11.1711 -1.6814 24 8 7.1702 -10.6753 -2.5401 25 8 7.0455 -11.6779 -0.5748 26 6 2.7983 -10.4987 -0.8788 27 6 2.1377 -9.6541 0.2151 28 1 -0.4849 0.8401 0.0004 29 1 0.3532 -2.3906 -0.0005 30 1 0.6158 -4.9205 -0.8904 31 1 0.6178 -4.9209 0.8896 32 1 3.1491 -5.7995 -0.0029 33 1 4.2558 -6.9706 -0.1205 34 1 4.4890 -8.2883 1.0570 35 1 5.7895 -8.7858 -0.9598 36 1 4.3488 -8.5595 -1.9813 37 1 4.6535 -10.6696 0.2034 38 1 4.9120 -9.8172 -3.3115 39 1 8.0088 -11.6231 -0.5096 40 1 2.5256 -11.5456 -0.7446 41 1 2.4600 -10.1566 -1.8569 42 1 2.4033 -10.0518 1.1945 43 1 1.0550 -9.6769 0.0906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:45 Heat of formation + Delta-G solvation = -205.672841 kcal Electronic energy + Delta-G solvation = -28340.039207 eV Core-core repulsion = 23999.292346 eV Total energy + Delta-G solvation = -4340.746862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24664 -40.29127 -38.69578 -38.08087 -36.86758 -36.15184 -34.53580 -33.80060 -33.06938 -31.45381 -31.29696 -29.04798 -27.43970 -24.95150 -24.19860 -23.73282 -22.01439 -20.97575 -19.70975 -19.51175 -18.68444 -18.46975 -18.02774 -17.83354 -16.73877 -16.20598 -16.11825 -15.69058 -15.59223 -15.40670 -14.73240 -14.54015 -14.52113 -14.31222 -14.05638 -13.76425 -13.62332 -13.38241 -13.09345 -12.88516 -12.51817 -12.25571 -12.16442 -12.04293 -11.90757 -11.64596 -11.59476 -11.37320 -11.15567 -11.13014 -10.92259 -10.46893 -10.38328 -10.32837 -9.97913 -9.64637 -8.98260 -8.64164 -8.51002 -8.11032 -6.52330 -3.94366 1.63363 2.44244 2.65516 3.10914 3.21503 3.26635 3.30677 3.66065 3.73824 3.93142 4.05489 4.10791 4.16929 4.40525 4.65543 4.67836 4.83285 4.90330 4.93718 5.01348 5.15243 5.16438 5.27119 5.40158 5.46323 5.48533 5.65932 5.69811 5.90939 5.96911 5.98405 6.00621 6.07046 6.42738 6.72784 6.89986 6.98413 7.36337 7.45130 7.91403 8.11393 8.44057 8.73687 9.03654 9.38503 9.86212 10.64552 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.002284 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.293825 B =12258.700335 C =13174.189643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.725 5.725 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.632 5.632 17 C 0.115 3.885 18 C -0.142 4.142 19 C -0.113 4.113 20 C 0.126 3.874 21 H 0.140 0.860 22 O -0.529 6.529 23 C 0.449 3.551 24 O -0.507 6.507 25 O -0.513 6.513 26 C -0.125 4.125 27 C 0.130 3.870 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.387 0.613 39 H 0.411 0.589 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.695 -23.459 0.445 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.001 4.001 13 N -0.384 5.384 14 C 0.410 3.590 15 O -0.473 6.473 16 N -0.370 5.370 17 C -0.009 4.009 18 C -0.180 4.180 19 C -0.132 4.132 20 C 0.065 3.935 21 H 0.157 0.843 22 O -0.336 6.336 23 C 0.291 3.709 24 O -0.395 6.395 25 O -0.326 6.326 26 C -0.163 4.163 27 C 0.007 3.993 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.246 0.754 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.237 0.763 39 H 0.271 0.729 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.980 -23.854 0.069 25.154 hybrid contribution 1.332 1.548 0.069 2.043 sum 9.312 -22.307 0.137 24.173 Atomic orbital electron populations 1.69619 1.06010 1.28533 1.49267 1.25331 0.95672 0.99940 0.96790 0.85811 0.79214 0.80493 0.78496 1.20260 1.20792 1.19331 1.19722 0.93441 0.81993 1.48288 0.87694 1.41791 1.09509 1.04452 1.62578 1.19753 0.88276 0.85006 0.85533 1.90480 1.13780 1.86880 1.57486 1.20804 0.91269 0.84906 1.03171 1.44977 1.11269 1.03385 1.78803 1.15749 0.84825 0.80596 0.77823 1.90893 1.14222 1.83887 1.58309 1.47195 1.05268 1.06049 1.78501 1.21551 0.80425 1.00328 0.98605 1.22073 1.00744 0.94466 1.00701 1.21841 0.97214 0.95030 0.99137 1.21597 0.85010 1.01534 0.85396 0.84317 1.86657 1.80538 1.35415 1.30949 1.24696 0.93477 0.73987 0.78773 1.90769 1.64532 1.41859 1.42296 1.84536 1.29793 1.75460 1.42762 1.21943 0.92742 1.00655 1.00955 1.21433 1.00937 0.79303 0.97629 0.91575 0.76994 0.89925 0.90052 0.75433 0.89414 0.90986 0.90774 0.90507 0.88484 0.76255 0.72925 0.90180 0.90255 0.91695 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 13.05 55.50 0.72 -23.08 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C 0.43 9.77 7.85 -10.98 -0.09 9.68 16 11 O -0.60 -15.14 15.24 5.55 0.08 -15.06 16 12 C 0.13 2.36 6.16 -5.19 -0.03 2.32 16 13 N -0.72 -12.19 5.44 -66.41 -0.36 -12.55 16 14 C 0.71 11.42 8.29 -86.92 -0.72 10.70 16 15 O -0.59 -11.42 15.77 5.29 0.08 -11.33 16 16 N -0.63 -7.43 2.97 -178.50 -0.53 -7.96 16 17 C 0.11 1.07 6.39 -3.71 -0.02 1.04 16 18 C -0.14 -1.06 4.73 -26.61 -0.13 -1.18 16 19 C -0.11 -0.69 1.97 -90.58 -0.18 -0.87 16 20 C 0.13 0.80 3.25 -27.88 -0.09 0.71 16 21 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 22 O -0.53 -4.42 12.46 -55.13 -0.69 -5.11 16 23 C 0.45 3.37 6.60 36.00 0.24 3.61 16 24 O -0.51 -5.58 17.08 -25.47 -0.43 -6.02 16 25 O -0.51 -2.61 13.39 -39.25 -0.53 -3.14 16 26 C -0.12 -0.87 5.24 -26.61 -0.14 -1.01 16 27 C 0.13 1.21 6.44 -3.71 -0.02 1.19 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.40 9.42 7.90 -40.82 -0.32 9.09 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.41 6.64 4.93 -40.82 -0.20 6.44 16 33 H 0.09 0.92 5.65 -51.93 -0.29 0.63 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.52 7.34 -51.93 -0.38 0.14 16 36 H 0.08 0.62 6.80 -51.93 -0.35 0.27 16 37 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.39 2.81 6.97 45.56 0.32 3.13 16 39 H 0.41 0.64 9.10 45.56 0.41 1.06 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 1.10 6.99 -51.93 -0.36 0.73 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -35.04 359.63 -6.79 -41.83 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -4.06 Total: 16.78 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: -1.42 Total: 18.38 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.23 Total: -57.19 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.48 Total: -40.65 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.04 -6.79 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.842 kcal (2) G-P(sol) polarization free energy of solvation -35.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds