Wall clock time and date at job start Tue Mar 31 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34948 * 126.03556 * 2 1 4 4 C 1.35317 * 107.74760 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04221 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47386 * 20.00227 * 5 4 3 7 7 C 1.52998 * 109.47586 * 260.00028 * 5 4 3 8 8 O 1.42902 * 109.47221 * 305.00638 * 7 5 4 9 9 N 1.46508 * 109.47106 * 140.00053 * 5 4 3 10 10 S 1.65598 * 120.00068 * 215.00260 * 9 5 4 11 11 O 1.42104 * 104.27569 * 308.92569 * 10 9 5 12 12 O 1.42102 * 104.27715 * 181.07232 * 10 9 5 13 13 C 1.81394 * 104.44995 * 64.99872 * 10 9 5 14 14 C 1.52996 * 109.47274 * 181.13237 * 13 10 9 15 15 C 1.50709 * 115.54840 * 294.68621 * 14 13 10 16 16 H 1.07997 * 119.99991 * 95.18977 * 15 14 13 17 17 C 1.37883 * 119.99533 * 274.91458 * 15 14 13 18 18 N 1.31505 * 120.00170 * 6.45357 * 17 15 14 19 19 Si 1.86802 * 119.99390 * 186.45379 * 17 15 14 20 20 H 1.48497 * 109.47221 * 90.00155 * 19 17 15 21 21 H 1.48499 * 109.46774 * 209.99475 * 19 17 15 22 22 H 1.48498 * 109.47320 * 329.99702 * 19 17 15 23 23 C 1.53001 * 117.50200 * 80.35043 * 14 13 10 24 24 C 1.52998 * 117.50418 * 149.01490 * 14 13 10 25 25 C 1.39865 * 107.91866 * 0.26139 * 4 3 2 26 26 N 1.30834 * 108.20279 * 359.55647 * 25 4 3 27 27 H 1.08999 * 109.46937 * 90.00185 * 1 2 3 28 28 H 1.08999 * 109.46869 * 210.00118 * 1 2 3 29 29 H 1.08997 * 109.47165 * 329.99882 * 1 2 3 30 30 H 1.08004 * 126.12993 * 359.95717 * 3 2 1 31 31 H 1.09003 * 109.46805 * 64.99805 * 7 5 4 32 32 H 1.09002 * 109.47463 * 184.99929 * 7 5 4 33 33 H 0.96703 * 114.00014 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99685 * 35.00197 * 9 5 4 35 35 H 1.08996 * 109.46893 * 61.13120 * 13 10 9 36 36 H 1.09000 * 109.47351 * 301.12981 * 13 10 9 37 37 H 0.97001 * 119.99820 * 185.08901 * 18 17 15 38 38 H 1.08992 * 117.50161 * 215.00326 * 23 14 13 39 39 H 1.08999 * 117.49665 * 0.03383 * 23 14 13 40 40 H 1.08999 * 117.49642 * 359.97438 * 24 14 13 41 41 H 1.08995 * 117.49888 * 144.96940 * 24 14 13 42 42 H 1.08002 * 125.89964 * 179.73536 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5454 0.0002 6 1 4.5000 2.5420 0.3510 7 6 5.3287 1.6384 -1.4202 8 8 5.5712 0.3232 -1.9237 9 7 5.7815 0.9711 0.8887 10 16 6.7707 1.9659 1.7685 11 8 7.2956 2.8747 0.8104 12 8 7.6221 1.0759 2.4772 13 6 5.6516 2.8216 2.9112 14 6 6.4522 3.8023 3.7705 15 6 7.4509 3.1775 4.7104 16 1 8.4841 3.0778 4.4122 17 6 7.0466 2.7384 5.9534 18 7 5.7704 2.7473 6.2708 19 14 8.3117 2.1308 7.1862 20 1 8.7810 3.2695 8.0158 21 1 7.6952 1.1018 8.0616 22 1 9.4643 1.5382 6.4614 23 6 6.8157 5.1523 3.1490 24 6 5.7424 5.0746 4.2377 25 6 3.5347 -0.7320 -0.0051 26 7 2.2892 -1.1327 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.9281 2.1194 -0.0007 31 1 4.6090 2.1462 -2.0624 32 1 6.2628 2.2000 -1.4061 33 1 5.9287 0.3056 -2.8220 34 1 5.8730 0.0082 0.9616 35 1 5.1613 2.0912 3.5547 36 1 4.8992 3.3677 2.3423 37 1 5.4925 2.5087 7.1690 38 1 7.7771 5.5886 3.4200 39 1 6.4841 5.3420 2.1282 40 1 4.7052 5.2133 3.9326 41 1 5.9974 5.4595 5.2250 42 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649872153.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:09 Heat of formation + Delta-G solvation = -12.368226 kcal Electronic energy + Delta-G solvation = -27032.145700 eV Core-core repulsion = 23142.534026 eV Total energy + Delta-G solvation = -3889.611674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25658 -37.47442 -36.75103 -36.14630 -35.04580 -34.79027 -32.97866 -32.01448 -30.47761 -28.17433 -28.04739 -26.50103 -25.43097 -22.72717 -21.26958 -21.21056 -20.14456 -19.66164 -18.51839 -17.54848 -17.23205 -16.53296 -16.41214 -15.76069 -15.41560 -15.05376 -14.74642 -14.52664 -14.44469 -14.06082 -13.82090 -13.61559 -13.43177 -13.08469 -12.80643 -12.64436 -12.44535 -11.88352 -11.82364 -11.75084 -11.27239 -11.22555 -11.11369 -11.01387 -10.87737 -10.62145 -10.54691 -10.45687 -10.09881 -9.88170 -9.72595 -9.42342 -9.22248 -8.93499 -8.53078 -8.42353 -8.08624 -6.12060 -4.21850 1.11687 1.84412 2.46962 2.79730 3.31996 3.38796 3.47152 3.52324 4.26769 4.41008 4.41157 4.61840 4.75278 4.92031 4.94612 4.96200 5.13715 5.17092 5.18026 5.21956 5.25835 5.35329 5.43954 5.69315 5.71457 5.78688 5.91977 6.03273 6.22485 6.31742 6.41687 6.61780 6.63332 6.70661 6.93020 6.98593 7.25407 7.38880 7.39053 7.68555 7.70176 7.83258 8.21637 8.84428 9.49747 10.96374 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.004101 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.510149 B = 6825.584053 C = 7396.644800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.058 3.942 4 C -0.231 4.231 5 C 0.238 3.762 6 H 0.096 0.904 7 C 0.063 3.937 8 O -0.562 6.562 9 N -1.117 6.117 10 S 2.606 3.394 11 O -0.976 6.976 12 O -0.947 6.947 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.511 4.511 16 H 0.069 0.931 17 C 0.080 3.920 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.210 4.210 24 C -0.140 4.140 25 C 0.083 3.917 26 N -0.304 5.304 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.373 0.627 34 H 0.414 0.586 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.262 0.738 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -1.634 -14.970 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.089 4.089 4 C -0.244 4.244 5 C 0.129 3.871 6 H 0.114 0.886 7 C -0.017 4.017 8 O -0.366 6.366 9 N -0.872 5.872 10 S 2.703 3.297 11 O -0.966 6.966 12 O -0.937 6.937 13 C -0.687 4.687 14 C 0.040 3.960 15 C -0.548 4.548 16 H 0.087 0.913 17 C -0.124 4.124 18 N -0.511 5.511 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.191 1.191 23 C -0.247 4.247 24 C -0.179 4.179 25 C -0.103 4.103 26 N -0.125 5.125 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.191 0.809 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.219 0.781 34 H 0.248 0.752 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.984 -2.686 -14.386 18.298 hybrid contribution 0.416 0.361 0.517 0.755 sum -10.568 -2.325 -13.869 17.591 Atomic orbital electron populations 1.21812 0.74424 1.04489 1.03063 1.48401 1.06496 1.03878 1.57381 1.22270 0.90693 0.93505 1.02410 1.19966 0.93405 0.94533 1.16479 1.18864 0.84519 0.94981 0.88758 0.88627 1.22769 0.99953 0.84692 0.94239 1.86480 1.87437 1.27837 1.34888 1.55957 1.52259 1.20560 1.58465 1.05174 0.75422 0.74519 0.74579 1.93486 1.76980 1.66166 1.59996 1.93562 1.62953 1.63200 1.74012 1.30006 1.13132 1.12473 1.13118 1.18302 0.97070 0.84520 0.96093 1.20554 0.94188 1.40260 0.99757 0.91280 1.24932 0.95185 0.93972 0.98331 1.70007 1.14304 1.47055 1.19737 0.86601 0.82115 0.78676 0.80967 1.20505 1.21059 1.19054 1.23219 1.00345 1.04513 0.96672 1.22530 0.94198 1.03667 0.97542 1.23613 0.94776 0.94416 0.97507 1.77373 1.01739 1.08068 1.25303 0.91001 0.89401 0.89532 0.80878 0.93402 0.91518 0.78089 0.75242 0.84708 0.88663 0.92840 0.89517 0.90654 0.91606 0.89589 0.80091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.47 59.85 0.69 1.39 16 2 N -0.38 -4.31 4.01 -68.17 -0.27 -4.58 16 3 C 0.06 0.63 11.40 -17.22 -0.20 0.43 16 4 C -0.23 -2.90 4.84 -105.06 -0.51 -3.41 16 5 C 0.24 3.08 2.90 -69.08 -0.20 2.88 16 6 H 0.10 1.09 7.12 -51.93 -0.37 0.72 16 7 C 0.06 0.74 6.87 37.16 0.26 0.99 16 8 O -0.56 -6.33 12.52 -35.23 -0.44 -6.78 16 9 N -1.12 -17.26 5.29 -5.88 -0.03 -17.29 16 10 S 2.61 52.06 5.18 -107.50 -0.56 51.50 16 11 O -0.98 -20.40 17.05 -57.54 -0.98 -21.38 16 12 O -0.95 -22.88 17.48 -57.54 -1.01 -23.89 16 13 C -0.55 -11.46 5.83 37.16 0.22 -11.24 16 14 C 0.04 1.02 1.33 -155.66 -0.21 0.82 16 15 C -0.51 -13.98 7.97 -34.43 -0.27 -14.25 16 16 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 17 C 0.08 2.21 5.39 -17.82 -0.10 2.11 16 18 N -0.88 -24.22 12.93 55.43 0.72 -23.51 16 19 Si 0.89 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 C -0.21 -4.50 9.96 -26.69 -0.27 -4.76 16 24 C -0.14 -3.13 9.44 -26.69 -0.25 -3.39 16 25 C 0.08 1.13 10.57 -17.37 -0.18 0.95 16 26 N -0.30 -4.27 12.58 30.62 0.39 -3.88 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 33 H 0.37 2.65 9.12 45.56 0.42 3.07 16 34 H 0.41 6.06 7.86 -34.47 -0.27 5.78 16 35 H 0.13 2.97 8.14 -51.93 -0.42 2.55 16 36 H 0.09 1.61 7.36 -51.92 -0.38 1.22 16 37 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.18 2.26 7.70 -52.49 -0.40 1.85 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -36.38 369.85 -7.83 -44.21 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.17 Total: 10.97 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -1.03 Total: -27.48 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.80 Total: -49.26 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -2.43 Total: -52.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.56 Total: 51.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.38 -7.83 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649872153.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.840 kcal (2) G-P(sol) polarization free energy of solvation -36.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds