Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 N 1.46899 * 109.47160 * 185.00225 * 4 2 1 6 6 C 1.46903 * 110.99701 * 179.97438 * 5 4 2 7 7 C 1.50707 * 109.46739 * 179.97438 * 6 5 4 8 8 N 1.30726 * 125.53919 * 0.02622 * 7 6 5 9 9 C 1.34445 * 109.94566 * 179.97438 * 8 7 6 10 10 O 1.21722 * 125.93004 * 180.02562 * 9 8 7 11 11 N 1.34994 * 108.14833 * 359.97438 * 9 8 7 12 12 C 1.46510 * 126.85854 * 179.97438 * 11 9 8 13 13 N 1.35152 * 125.53634 * 179.71668 * 7 6 5 14 14 H 0.97003 * 126.64982 * 0.03668 * 13 7 6 15 15 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 16 16 C 1.34777 * 120.00199 * 275.00460 * 15 2 1 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 2 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 2 19 19 S 1.80999 * 109.46903 * 179.72354 * 18 16 15 20 20 C 1.76200 * 99.99730 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00351 * 0.02562 * 20 19 18 22 22 C 1.38796 * 120.00095 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99941 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00384 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46990 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47522 * 119.99735 * 24 22 20 27 27 H 1.48500 * 109.47073 * 240.00101 * 24 22 20 28 28 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 29 29 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 31 31 H 1.09006 * 109.46830 * 304.99500 * 4 2 1 32 32 H 1.08994 * 109.47535 * 64.99592 * 4 2 1 33 33 H 1.00895 * 111.00018 * 56.04473 * 5 4 2 34 34 H 1.08993 * 109.47400 * 299.99506 * 6 5 4 35 35 H 1.08996 * 109.47529 * 60.00008 * 6 5 4 36 36 H 1.08994 * 109.46885 * 0.02666 * 12 11 9 37 37 H 1.08998 * 109.46746 * 120.02423 * 12 11 9 38 38 H 1.09003 * 109.46792 * 240.02670 * 12 11 9 39 39 H 0.97000 * 119.99484 * 94.99557 * 15 2 1 40 40 H 1.09004 * 109.46965 * 299.72211 * 18 16 15 41 41 H 1.08994 * 109.46990 * 59.72065 * 18 16 15 42 42 H 0.97002 * 120.00288 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5040 -0.8266 -1.1904 6 6 4.0302 -1.5158 -2.3762 7 6 5.5317 -1.6042 -2.2807 8 7 6.2591 -1.1421 -1.2978 9 6 7.5592 -1.3908 -1.5331 10 8 8.4875 -1.0864 -0.8069 11 7 7.6566 -2.0376 -2.7139 12 6 8.8853 -2.5024 -3.3627 13 7 6.3444 -2.1795 -3.1946 14 1 6.0740 -2.6060 -4.0229 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6553 -0.7271 3.5861 19 16 2.7223 0.4375 4.9700 20 6 3.3309 -0.6263 6.2359 21 1 3.5396 -1.6629 6.0161 22 6 3.5431 -0.1319 7.5153 23 7 3.2902 1.1319 7.7829 24 14 4.1890 -1.2595 8.8572 25 1 4.3919 -2.6223 8.3034 26 1 5.4813 -0.7340 9.3659 27 1 3.2066 -1.3188 9.9693 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.7995 -1.2883 -0.3434 34 1 3.6095 -2.5198 -2.4296 35 1 3.7557 -0.9587 -3.2720 36 1 9.7433 -2.2470 -2.7410 37 1 8.8404 -3.5835 -3.4936 38 1 8.9861 -2.0223 -4.3361 39 1 2.2490 -1.6317 1.1526 40 1 1.9840 -1.5491 3.8351 41 1 3.6536 -1.1193 3.3925 42 1 3.4381 1.4774 8.6771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669245806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = 32.829961 kcal Electronic energy + Delta-G solvation = -24965.963930 eV Core-core repulsion = 21110.604948 eV Total energy + Delta-G solvation = -3855.358982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.57670 -39.41630 -37.74610 -37.00688 -35.06588 -33.85707 -32.33335 -31.88925 -31.39131 -28.89569 -28.40155 -26.54579 -25.39045 -24.38180 -22.19186 -21.47479 -21.39434 -20.21678 -18.88582 -17.81277 -17.13376 -16.72684 -16.43686 -16.24983 -15.79592 -15.70039 -15.06386 -14.73938 -14.71647 -14.53676 -14.11443 -13.89860 -13.60654 -13.25187 -13.15398 -13.09267 -12.70002 -12.59607 -12.42053 -12.35159 -11.91945 -11.59157 -11.32579 -11.04597 -10.98976 -10.92110 -10.66904 -10.45142 -10.07706 -9.70928 -9.26333 -8.98685 -8.91259 -8.84547 -8.78806 -8.11936 -6.38434 -6.12446 -3.81621 0.92412 1.00436 3.05679 3.12989 3.20885 3.23261 3.28905 3.35358 3.40156 3.59482 3.80793 3.85156 4.29520 4.41788 4.48596 4.52713 4.65909 4.71561 4.90266 4.98527 4.99831 5.19799 5.22817 5.27118 5.35612 5.41032 5.41883 5.62061 5.66796 5.75008 6.01271 6.10726 6.15051 6.26742 6.44195 6.70424 6.74695 6.94381 7.66759 7.69245 7.78414 7.98804 8.44919 8.74327 9.33117 10.95099 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010126 B = 0.002774 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.455131 B =10092.342730 C =12390.763901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.099 0.901 4 C 0.055 3.945 5 N -0.671 5.671 6 C 0.129 3.871 7 C 0.394 3.606 8 N -0.542 5.542 9 C 0.634 3.366 10 O -0.528 6.528 11 N -0.449 5.449 12 C 0.108 3.892 13 N -0.502 5.502 14 H 0.444 0.556 15 N -0.735 5.735 16 C 0.537 3.463 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.532 4.532 21 H 0.072 0.928 22 C 0.072 3.928 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.281 1.281 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.362 0.638 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.392 0.608 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -12.648 -31.602 34.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.117 0.883 4 C -0.075 4.075 5 N -0.305 5.305 6 C -0.003 4.003 7 C 0.119 3.881 8 N -0.290 5.290 9 C 0.333 3.667 10 O -0.398 6.398 11 N -0.281 5.281 12 C -0.034 4.034 13 N -0.234 5.234 14 H 0.291 0.709 15 N -0.390 5.390 16 C 0.324 3.676 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.681 4.681 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.207 1.207 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.183 0.817 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.225 0.775 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.302 -9.332 -30.444 31.843 hybrid contribution 0.913 -4.168 -0.323 4.279 sum 1.216 -13.499 -30.766 33.619 Atomic orbital electron populations 1.22167 0.95091 1.01946 1.02968 1.20900 0.93538 0.98623 0.82965 0.88318 1.22336 0.86372 0.99572 0.99182 1.60084 1.09832 1.56501 1.04095 1.20552 0.82756 0.99342 0.97647 1.23860 0.94995 0.85508 0.83774 1.71972 1.01943 1.29418 1.25647 1.18454 0.88886 0.79798 0.79601 1.91000 1.41801 1.57384 1.49630 1.49541 0.96150 1.59545 1.22851 1.21864 0.82851 0.99869 0.98805 1.44728 0.97677 1.57583 1.23460 0.70921 1.46021 1.69713 1.13493 1.09740 1.20226 0.76603 0.87155 0.83648 1.90698 1.48148 1.15630 1.84308 1.23533 1.03687 1.04767 0.98481 1.85382 1.85961 1.13020 0.98937 1.22911 1.50583 0.98134 0.96458 0.90942 1.24988 0.95184 0.95514 0.97973 1.70033 1.45791 1.13125 1.21404 0.86125 0.78522 0.80175 0.80717 1.19651 1.20577 1.20669 0.91814 0.92723 0.91284 0.94364 0.89202 0.81661 0.91212 0.86982 0.87253 0.91119 0.91105 0.77464 0.89476 0.89095 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.20 16 2 C 0.15 1.53 2.88 -67.93 -0.20 1.33 16 3 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 4 C 0.05 0.34 5.30 -3.83 -0.02 0.32 16 5 N -0.67 -5.30 6.24 -115.06 -0.72 -6.02 16 6 C 0.13 0.53 6.31 -4.97 -0.03 0.50 16 7 C 0.39 3.02 7.97 -155.12 -1.24 1.79 16 8 N -0.54 -7.45 10.70 -13.83 -0.15 -7.60 16 9 C 0.63 9.44 8.97 -87.02 -0.78 8.66 16 10 O -0.53 -10.23 17.69 5.17 0.09 -10.14 16 11 N -0.45 -4.02 4.06 -72.07 -0.29 -4.31 16 12 C 0.11 0.53 11.57 59.85 0.69 1.23 16 13 N -0.50 -2.55 7.36 32.73 0.24 -2.31 16 14 H 0.44 0.11 8.96 -182.31 -1.63 -1.52 16 15 N -0.74 -9.33 4.36 -53.81 -0.23 -9.56 16 16 C 0.54 10.10 7.81 -10.98 -0.09 10.01 16 17 O -0.51 -11.80 15.52 5.55 0.09 -11.71 16 18 C -0.15 -3.21 6.16 36.01 0.22 -2.98 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.67 9.50 30.94 0.29 -15.38 16 21 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.95 13.22 55.49 0.73 -26.22 16 24 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.36 3.48 7.42 -39.29 -0.29 3.19 16 34 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.11 0.68 7.80 -51.93 -0.41 0.28 16 37 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.39 3.82 8.15 -40.82 -0.33 3.49 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 41 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 42 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -43.93 377.63 -9.92 -53.85 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.25 Total: -1.26 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.89 Total: 6.32 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.42 Total: -56.01 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.18 Total: -21.85 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -43.93 -9.92 -53.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669245806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.678 kcal (2) G-P(sol) polarization free energy of solvation -43.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds