Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00604 * 2 1 4 4 O 1.20832 * 119.99838 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00532 * 179.97438 * 3 2 1 6 6 O 1.42909 * 110.63848 * 35.63382 * 5 3 2 7 7 C 1.42899 * 113.99376 * 62.10878 * 6 5 3 8 8 C 1.55150 * 110.72497 * 158.77771 * 5 3 2 9 9 C 1.55124 * 101.48841 * 153.73743 * 8 5 3 10 10 N 1.47426 * 104.93979 * 323.22035 * 9 8 5 11 11 C 1.34777 * 125.64607 * 204.03240 * 10 9 8 12 12 O 1.21591 * 119.99661 * 179.97438 * 11 10 9 13 13 N 1.34772 * 120.00088 * 359.96845 * 11 10 9 14 14 C 1.46498 * 119.99799 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47247 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99689 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00341 * 180.02562 * 15 14 13 18 18 C 1.37089 * 119.99976 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00409 * 359.97438 * 18 17 15 20 20 C 1.38954 * 120.00048 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00353 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99696 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47171 * 89.99953 * 22 20 18 24 24 H 1.48500 * 109.47004 * 210.00051 * 22 20 18 25 25 H 1.48503 * 109.47080 * 329.99855 * 22 20 18 26 26 C 1.47028 * 108.70175 * 24.00915 * 10 9 8 27 27 H 1.08993 * 109.47376 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46875 * 59.99266 * 1 2 3 29 29 H 1.08997 * 109.46899 * 300.00217 * 1 2 3 30 30 H 1.09001 * 109.46786 * 186.91105 * 7 6 5 31 31 H 1.08998 * 109.47388 * 306.91442 * 7 6 5 32 32 H 1.09006 * 109.47288 * 66.91688 * 7 6 5 33 33 H 1.09002 * 111.00637 * 271.94562 * 8 5 3 34 34 H 1.09004 * 111.00349 * 35.79617 * 8 5 3 35 35 H 1.08999 * 110.41508 * 204.29839 * 9 8 5 36 36 H 1.08996 * 110.20412 * 82.04257 * 9 8 5 37 37 H 0.96993 * 120.00153 * 359.97438 * 13 11 10 38 38 H 1.09006 * 109.47408 * 300.00213 * 14 13 11 39 39 H 1.09000 * 109.47416 * 60.00249 * 14 13 11 40 40 H 0.97001 * 119.99507 * 359.97438 * 17 15 14 41 41 H 0.96997 * 120.00396 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.87610 * 239.51818 * 26 10 9 43 43 H 1.09003 * 110.00921 * 118.42924 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 8 4.1266 0.2155 -0.7781 7 6 3.7580 0.2512 -2.1583 8 6 4.0441 2.6542 -0.5248 9 6 5.4230 2.7898 0.1728 10 7 5.2347 2.1907 1.5066 11 6 5.9679 2.4683 2.6029 12 8 5.7220 1.9116 3.6556 13 7 6.9736 3.3626 2.5324 14 6 7.7701 3.6647 3.7242 15 6 8.8211 4.6883 3.3799 16 8 8.8976 5.1225 2.2499 17 7 9.6768 5.1207 4.3272 18 6 10.6332 6.0515 4.0138 19 1 10.7013 6.4381 3.0076 20 6 11.5150 6.4976 4.9906 21 7 12.4321 7.3895 4.6900 22 14 11.3977 5.8285 6.7307 23 1 12.2572 4.6241 6.8569 24 1 11.8537 6.8650 7.6914 25 1 9.9888 5.4645 7.0271 26 6 4.1144 1.2407 1.4428 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 0.5139 0.8899 30 1 4.1205 -0.6490 -2.6546 31 1 2.6725 0.3011 -2.2434 32 1 4.2001 1.1290 -2.6299 33 1 4.1512 2.6435 -1.6095 34 1 3.3678 3.4483 -0.2084 35 1 5.7011 3.8398 0.2644 36 1 6.1826 2.2425 -0.3852 37 1 7.1700 3.8063 1.6925 38 1 7.1203 4.0602 4.5049 39 1 8.2522 2.7539 4.0795 40 1 9.6158 4.7732 5.2308 41 1 13.0479 7.7007 5.3718 42 1 3.3344 1.5400 2.1429 43 1 4.4629 0.2363 1.6835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686403161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -165.806922 kcal Electronic energy + Delta-G solvation = -28400.565069 eV Core-core repulsion = 24061.546923 eV Total energy + Delta-G solvation = -4339.018146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60579 -40.16328 -38.97452 -38.26620 -37.09457 -36.25654 -34.53631 -33.76033 -31.82413 -31.42754 -30.08578 -28.39784 -27.67463 -26.87144 -24.87569 -23.74293 -23.08336 -20.60887 -20.00863 -19.67479 -18.91823 -18.82708 -18.08556 -17.47922 -17.02010 -16.25996 -16.00254 -15.82949 -15.70854 -15.26669 -15.15237 -14.95061 -14.63962 -14.31839 -13.90216 -13.75154 -13.69358 -13.32178 -13.15542 -13.00041 -12.70720 -12.50091 -12.33164 -12.28244 -12.15988 -12.10304 -12.02582 -11.55339 -11.28372 -11.23045 -11.06363 -10.63639 -10.29456 -10.13349 -10.05691 -9.69620 -9.08453 -8.77149 -8.61338 -8.30258 -6.40568 -3.93136 1.50200 1.99717 2.48024 3.00451 3.00798 3.05224 3.13320 3.24251 3.57264 3.75350 3.83248 4.03994 4.12537 4.15813 4.54955 4.62015 4.64334 4.72643 4.77021 4.84791 4.88074 5.06568 5.14274 5.15828 5.17175 5.28791 5.33490 5.38607 5.61671 5.65128 5.79266 5.80395 5.85185 5.95544 6.37742 6.59752 6.96164 7.16476 7.44904 7.99159 8.03202 8.44150 8.64034 8.81807 9.30004 9.63477 10.71520 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.002202 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.733396 B =12711.294901 C =13114.667602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.344 6.344 3 C 0.452 3.548 4 O -0.490 6.490 5 C 0.114 3.886 6 O -0.345 6.345 7 C 0.021 3.979 8 C -0.147 4.147 9 C 0.103 3.897 10 N -0.636 5.636 11 C 0.728 3.272 12 O -0.591 6.591 13 N -0.720 5.720 14 C 0.125 3.875 15 C 0.439 3.561 16 O -0.580 6.580 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.266 1.266 26 C 0.154 3.846 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.375 0.625 41 H 0.276 0.724 42 H 0.085 0.915 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.632 -15.504 -11.327 28.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.260 6.260 3 C 0.293 3.707 4 O -0.377 6.377 5 C 0.071 3.929 6 O -0.263 6.263 7 C -0.075 4.075 8 C -0.185 4.185 9 C -0.020 4.020 10 N -0.376 5.376 11 C 0.430 3.570 12 O -0.469 6.469 13 N -0.378 5.378 14 C -0.003 4.003 15 C 0.225 3.775 16 O -0.464 6.464 17 N -0.213 5.213 18 C -0.438 4.438 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C 0.030 3.970 27 H 0.123 0.877 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.588 -15.286 -11.059 28.671 hybrid contribution -0.286 0.047 0.788 0.840 sum -21.874 -15.239 -10.271 28.569 Atomic orbital electron populations 1.23370 0.76072 1.04115 1.02750 1.86619 1.23540 1.32597 1.83247 1.24096 0.91838 0.81944 0.72840 1.90710 1.66457 1.36306 1.44202 1.22393 0.84706 0.90552 0.95200 1.88118 1.70955 1.46963 1.20272 1.22964 0.99562 1.03318 0.81651 1.23462 0.97810 0.95155 1.02105 1.22342 0.96627 0.99920 0.83083 1.47280 1.35208 1.45787 1.09316 1.15193 0.79344 0.80232 0.82229 1.90924 1.72204 1.55990 1.27802 1.44731 1.33601 1.44736 1.14746 1.20842 0.93117 0.99001 0.87352 1.19630 0.85015 0.86496 0.86385 1.90531 1.73892 1.61059 1.20919 1.42110 1.30098 1.38863 1.10278 1.19432 1.07483 1.16746 1.00149 0.86079 1.25071 0.95825 0.96430 0.98617 1.69615 1.17911 1.29057 1.34740 0.86668 0.78827 0.79728 0.84263 1.19376 1.20006 1.19180 1.21411 0.89483 0.95389 0.90745 0.87692 0.91794 0.91551 0.88289 0.93884 0.92908 0.88172 0.87458 0.89280 0.90243 0.75327 0.89755 0.89688 0.79203 0.91387 0.89721 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.24 16 2 O -0.34 -3.05 10.06 -43.98 -0.44 -3.50 16 3 C 0.45 4.51 5.53 36.01 0.20 4.71 16 4 O -0.49 -5.81 15.52 -18.75 -0.29 -6.10 16 5 C 0.11 1.08 0.86 -89.94 -0.08 1.00 16 6 O -0.35 -3.15 10.24 -47.27 -0.48 -3.64 16 7 C 0.02 0.13 10.40 101.05 1.05 1.18 16 8 C -0.15 -1.24 5.91 -24.47 -0.14 -1.38 16 9 C 0.10 1.02 6.57 -2.41 -0.02 1.01 16 10 N -0.64 -8.22 3.33 -176.10 -0.59 -8.81 16 11 C 0.73 11.91 8.49 -86.92 -0.74 11.17 16 12 O -0.59 -11.39 16.67 5.29 0.09 -11.30 16 13 N -0.72 -11.88 5.49 -66.41 -0.36 -12.25 16 14 C 0.13 2.20 6.15 -5.19 -0.03 2.17 16 15 C 0.44 9.61 7.85 -10.98 -0.09 9.53 16 16 O -0.58 -14.50 15.24 5.55 0.08 -14.41 16 17 N -0.58 -13.35 5.09 -10.96 -0.06 -13.40 16 18 C -0.31 -8.50 10.16 -14.94 -0.15 -8.65 16 19 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 20 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 21 N -0.87 -24.90 13.96 55.50 0.77 -24.13 16 22 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.27 6.52 56.52 0.37 -4.91 16 26 C 0.15 1.75 6.22 -3.06 -0.02 1.73 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.26 6.85 -51.93 -0.36 -0.10 16 32 H 0.05 0.26 6.48 -51.93 -0.34 -0.08 16 33 H 0.10 0.62 6.13 -51.93 -0.32 0.30 16 34 H 0.11 0.98 7.22 -51.93 -0.37 0.60 16 35 H 0.09 0.86 7.30 -51.93 -0.38 0.48 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.41 6.58 5.92 -40.82 -0.24 6.33 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 41 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.08 0.98 7.81 -51.93 -0.41 0.58 16 43 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -34.96 362.47 -5.15 -40.11 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.58 Total: 12.86 kcal Atomic # 6 Polarization: 23.86 SS G_CDS: 0.96 Total: 24.82 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.23 Total: -58.58 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.04 Total: -38.94 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.96 -5.15 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686403161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.692 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds