Wall clock time and date at job start Tue Mar 31 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47323 * 2 1 4 4 C 1.34777 * 119.99774 * 180.02562 * 3 2 1 5 5 O 1.21278 * 120.00447 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.47027 * 180.02562 * 6 4 3 8 8 O 1.21287 * 119.99731 * 359.97438 * 7 6 4 9 9 N 1.34767 * 119.99869 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99895 * 179.97438 * 9 7 6 11 11 C 1.53501 * 114.20747 * 204.99407 * 10 9 7 12 12 N 1.47065 * 87.98741 * 220.14872 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31634 * 120.00298 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47644 * 89.99884 * 21 19 17 23 23 H 1.48506 * 109.47143 * 209.99830 * 21 19 17 24 24 H 1.48501 * 109.47120 * 329.99545 * 21 19 17 25 25 C 1.47067 * 87.88377 * 27.34414 * 12 11 10 26 26 H 1.08997 * 109.47499 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46848 * 300.00087 * 1 2 3 28 28 H 1.09004 * 109.47249 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.46848 * 239.99913 * 2 1 3 30 30 H 1.09004 * 109.47249 * 120.00376 * 2 1 3 31 31 H 0.97003 * 119.99757 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.46998 * 60.00014 * 6 4 3 33 33 H 1.08998 * 109.46593 * 299.99986 * 6 4 3 34 34 H 0.97001 * 120.00444 * 359.97438 * 9 7 6 35 35 H 1.09001 * 113.28417 * 338.06104 * 10 9 7 36 36 H 1.09001 * 113.46643 * 105.36573 * 11 10 9 37 37 H 1.09004 * 113.51834 * 334.94016 * 11 10 9 38 38 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 39 39 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 40 40 H 0.96995 * 120.00138 * 180.02562 * 20 19 17 41 41 H 1.09001 * 113.47005 * 87.43764 * 25 12 11 42 42 H 1.09003 * 113.46723 * 217.87945 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6273 -0.0005 5 8 4.1315 0.7055 -0.0005 6 6 3.8458 3.0482 0.0001 7 6 5.3529 3.0481 -0.0013 8 8 5.9592 1.9977 -0.0022 9 7 6.0267 4.2152 -0.0006 10 6 7.4917 4.2152 -0.0014 11 6 8.1215 5.4835 0.5911 12 7 9.1244 5.4247 -0.4830 13 6 10.3985 5.8333 -0.6444 14 8 10.9698 6.4084 0.2576 15 6 11.1130 5.5765 -1.9462 16 16 12.7945 6.2396 -1.8525 17 6 13.3816 5.8126 -3.4580 18 1 12.7341 5.2942 -4.1496 19 6 14.6743 6.1481 -3.8362 20 7 15.1131 5.8286 -5.0354 21 14 15.7918 7.0516 -2.6427 22 1 16.5506 6.0657 -1.8319 23 1 16.7418 7.9035 -3.4024 24 1 14.9715 7.9040 -1.7451 25 6 8.1230 4.7296 -1.3056 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.3880 2.1185 0.0004 32 1 3.4830 3.5615 0.8905 33 1 3.4820 3.5625 -0.8894 34 1 5.5418 5.0554 0.0005 35 1 7.9228 3.2861 0.3716 36 1 8.5417 5.3355 1.5859 37 1 7.4741 6.3585 0.5330 38 1 10.5749 6.0649 -2.7585 39 1 11.1551 4.5033 -2.1319 40 1 16.0166 6.0627 -5.2995 41 1 7.4753 5.4053 -1.8643 42 1 8.5444 3.9392 -1.9268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688604066.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:18 Heat of formation + Delta-G solvation = -63.809908 kcal Electronic energy + Delta-G solvation = -24317.455265 eV Core-core repulsion = 20425.612913 eV Total energy + Delta-G solvation = -3891.842352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98174 -40.23071 -38.89179 -37.58576 -35.64069 -34.14074 -32.43649 -32.05070 -30.61979 -29.83406 -27.65862 -26.16565 -25.58476 -23.81174 -22.43690 -21.31207 -20.69957 -19.18614 -17.87131 -17.74943 -17.33726 -16.72673 -16.65970 -16.48861 -16.09170 -15.62900 -15.29428 -14.92643 -14.91180 -14.31811 -14.13327 -13.93015 -13.78502 -13.38682 -13.10247 -12.96613 -12.90182 -12.77845 -12.68618 -12.47160 -12.37121 -11.94845 -11.93102 -11.36586 -11.25470 -11.00338 -10.62455 -10.53703 -9.88145 -9.80199 -9.60226 -9.51356 -9.38396 -9.00086 -8.77631 -8.51328 -6.92796 -6.28410 -4.00777 2.18891 2.22973 2.37657 2.58699 2.85249 2.99489 3.23771 3.34096 3.50728 3.57284 4.00081 4.05342 4.32923 4.35682 4.42423 4.51775 4.54829 4.66781 4.67386 4.71769 4.80309 4.85716 5.00924 5.10599 5.14216 5.29639 5.31839 5.37989 5.44566 5.50144 5.62147 5.76275 5.80273 5.96686 6.01551 6.10930 6.98334 7.08172 7.67967 7.80340 7.94569 7.96035 8.35288 8.42361 9.17495 10.80783 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.031936 B = 0.001747 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.540120 B =16020.788632 C =16605.634459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.738 5.738 4 C 0.509 3.491 5 O -0.491 6.491 6 C -0.165 4.165 7 C 0.514 3.486 8 O -0.487 6.487 9 N -0.721 5.721 10 C 0.113 3.887 11 C 0.098 3.902 12 N -0.649 5.649 13 C 0.566 3.434 14 O -0.513 6.513 15 C -0.116 4.116 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.089 0.911 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.086 3.914 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.399 0.601 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.402 0.598 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.495 -4.496 10.647 36.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.293 3.707 5 O -0.362 6.362 6 C -0.208 4.208 7 C 0.298 3.702 8 O -0.358 6.358 9 N -0.375 5.375 10 C 0.006 3.994 11 C -0.026 4.026 12 N -0.388 5.388 13 C 0.355 3.645 14 O -0.387 6.387 15 C -0.266 4.266 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.107 0.893 19 C -0.112 4.112 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.039 4.039 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.232 0.768 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.237 0.763 35 H 0.151 0.849 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -32.180 -5.079 11.818 34.656 hybrid contribution -0.737 0.634 -0.940 1.352 sum -32.917 -4.445 10.879 34.952 Atomic orbital electron populations 1.22005 0.94376 1.03368 1.02473 1.21286 0.94157 0.82853 1.02609 1.46037 1.06873 1.09000 1.77372 1.20008 0.82376 0.90817 0.77537 1.90901 1.54365 1.45415 1.45542 1.21590 0.95024 0.97374 1.06824 1.19986 0.89033 0.84039 0.77181 1.90910 1.69235 1.30367 1.45302 1.45766 1.06313 1.08661 1.76755 1.22886 0.79494 1.00137 0.96845 1.23218 0.88728 0.96481 0.94191 1.49274 1.10320 1.60821 1.18359 1.19875 0.78482 0.76818 0.89292 1.90719 1.64554 1.40403 1.43021 1.23219 1.01275 1.05646 0.96482 1.84776 1.06701 1.76726 1.23277 1.22304 1.02513 1.44294 0.97815 0.89340 1.24704 0.96951 0.94534 0.95040 1.69938 1.18008 1.45224 1.18439 0.86737 0.81873 0.81346 0.81911 1.19155 1.19897 1.15942 1.23560 0.88838 0.95896 0.95653 0.90726 0.91980 0.91939 0.91427 0.91469 0.76752 0.85923 0.85874 0.76323 0.84875 0.89641 0.89716 0.88468 0.88371 0.91921 0.89463 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.36 10.03 37.16 0.37 0.01 16 2 C 0.11 0.58 6.39 -4.04 -0.03 0.55 16 3 N -0.74 -3.40 5.56 -60.29 -0.33 -3.73 16 4 C 0.51 4.10 7.82 -10.98 -0.09 4.02 16 5 O -0.49 -6.94 14.18 -18.96 -0.27 -7.21 16 6 C -0.17 -0.67 6.19 -29.03 -0.18 -0.85 16 7 C 0.51 4.37 7.82 -10.99 -0.09 4.28 16 8 O -0.49 -7.09 13.77 -18.97 -0.26 -7.35 16 9 N -0.72 -4.25 5.39 -53.48 -0.29 -4.53 16 10 C 0.11 0.99 4.62 -67.67 -0.31 0.67 16 11 C 0.10 0.94 8.38 -8.51 -0.07 0.86 16 12 N -0.65 -8.81 3.69 -185.07 -0.68 -9.49 16 13 C 0.57 10.60 8.10 -10.99 -0.09 10.51 16 14 O -0.51 -11.51 16.64 5.56 0.09 -11.41 16 15 C -0.12 -2.34 5.98 36.00 0.22 -2.12 16 16 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 17 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 18 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 19 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 20 N -0.88 -26.76 13.97 55.49 0.78 -25.98 16 21 Si 0.86 21.98 27.74 -169.99 -4.72 17.26 16 22 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 25 C 0.09 0.84 8.25 -8.37 -0.07 0.77 16 26 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.40 0.43 8.47 -40.82 -0.35 0.08 16 32 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.12 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.40 0.88 8.76 -40.82 -0.36 0.52 16 35 H 0.13 1.47 7.45 -51.93 -0.39 1.08 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 39 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 40 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -42.02 376.40 -8.28 -50.31 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -6.16 Total: -4.42 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.12 Total: 6.54 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.53 Total: -43.74 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.44 Total: -25.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.26 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -42.02 -8.28 -50.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688604066.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.504 kcal (2) G-P(sol) polarization free energy of solvation -42.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds