Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.38224 * 120.41548 * 95.00114 * 11 10 9 13 13 C 1.39379 * 118.35424 * 179.97438 * 12 11 10 14 14 O 1.35510 * 120.51308 * 179.97438 * 13 12 11 15 15 N 1.32824 * 118.97054 * 359.97438 * 13 12 11 16 16 C 1.31761 * 120.72313 * 359.97438 * 15 13 12 17 17 C 1.50700 * 119.09484 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47154 * 90.00386 * 17 16 15 19 19 C 1.34776 * 120.00019 * 180.02562 * 18 17 16 20 20 O 1.21509 * 119.99812 * 359.97438 * 19 18 17 21 21 C 1.48146 * 119.99896 * 179.97438 * 19 18 17 22 22 C 1.39817 * 120.92434 * 359.72049 * 21 19 18 23 23 C 1.38146 * 119.00150 * 179.79665 * 22 21 19 24 24 N 1.31805 * 120.89917 * 0.48624 * 23 22 21 25 25 C 1.31817 * 122.04618 * 359.74116 * 24 23 22 26 26 C 1.38145 * 120.89829 * 0.02562 * 25 24 23 27 27 N 1.31785 * 121.81312 * 359.74643 * 16 15 13 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 31 31 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 32 32 H 1.08007 * 120.82419 * 359.95516 * 12 11 10 33 33 H 0.96705 * 114.00410 * 90.00125 * 14 13 12 34 34 H 1.09003 * 109.47245 * 210.00633 * 17 16 15 35 35 H 1.09002 * 109.46921 * 330.00017 * 17 16 15 36 36 H 0.96998 * 119.99614 * 359.97438 * 18 17 16 37 37 H 1.08007 * 120.49770 * 359.97438 * 22 21 19 38 38 H 1.08004 * 119.54944 * 180.22231 * 23 22 21 39 39 H 1.08002 * 119.55117 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.50175 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.7034 -5.4014 -1.1879 13 6 -0.2046 -6.4576 -1.1385 14 8 -0.6030 -7.0763 -2.2764 15 7 -0.6734 -6.8484 0.0413 16 6 -0.2884 -6.2501 1.1503 17 6 -0.8432 -6.7237 2.4690 18 7 0.0233 -7.7710 3.0154 19 6 -0.2782 -8.3472 4.1959 20 8 -1.2685 -7.9977 4.8072 21 6 0.5977 -9.4066 4.7482 22 6 1.7387 -9.8277 4.0584 23 6 2.5297 -10.8157 4.6121 24 7 2.2158 -11.3654 5.7682 25 6 1.1472 -11.0013 6.4487 26 6 0.3032 -10.0174 5.9710 27 7 0.5725 -5.2524 1.1386 28 1 -0.4849 0.8400 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7145 -0.8895 31 1 2.6847 -3.7145 0.8905 32 1 1.1037 -5.0594 -2.1309 33 1 -0.0495 -7.8276 -2.5302 34 1 -0.8864 -5.8872 3.1665 35 1 -1.8461 -7.1235 2.3187 36 1 0.8136 -8.0502 2.5273 37 1 1.9992 -9.3851 3.1082 38 1 3.4150 -11.1450 4.0886 39 1 0.9280 -11.4792 7.3921 40 1 -0.5704 -9.7237 6.5340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691414993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = 34.341637 kcal Electronic energy + Delta-G solvation = -26002.959538 eV Core-core repulsion = 22012.222156 eV Total energy + Delta-G solvation = -3990.737382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38226 -40.87963 -39.32522 -37.87670 -35.82515 -34.85319 -33.31333 -33.06524 -31.92058 -31.58245 -30.66231 -27.95154 -26.62791 -24.94151 -23.86112 -23.55335 -22.86308 -21.60912 -21.13045 -19.12703 -18.67459 -17.87380 -17.23334 -17.08984 -16.24717 -16.05544 -15.86413 -15.73374 -15.56447 -15.37431 -14.78932 -14.32758 -14.22886 -14.17286 -13.93591 -13.77323 -13.40703 -13.10677 -13.02917 -12.72288 -12.21681 -12.14182 -11.94087 -11.10033 -10.88857 -10.77961 -10.63736 -10.46483 -10.33867 -10.18350 -9.95167 -9.86102 -9.65551 -9.49362 -9.46137 -9.30652 -9.02132 -7.09822 -5.86461 -3.18665 0.28900 0.64253 0.66201 0.91089 2.53851 2.62606 3.16861 3.38492 3.42887 3.44633 3.45774 3.54075 3.80831 3.98067 4.13667 4.23322 4.32783 4.49908 4.53941 4.62573 4.80696 5.02297 5.04810 5.19877 5.24822 5.30040 5.36186 5.43569 5.52259 5.60395 5.64511 5.90215 5.92328 6.10920 6.14304 6.27941 6.39057 6.91793 7.03655 7.20341 7.45591 7.58716 7.75035 8.00211 8.28786 9.41024 9.91391 10.26522 11.35745 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002466 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.658077 B =11351.396082 C =12375.205822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.722 5.722 10 C 0.197 3.803 11 C 0.200 3.800 12 C -0.216 4.216 13 C 0.354 3.646 14 O -0.473 6.473 15 N -0.532 5.532 16 C 0.314 3.686 17 C 0.196 3.804 18 N -0.710 5.710 19 C 0.561 3.439 20 O -0.523 6.523 21 C -0.083 4.083 22 C -0.141 4.141 23 C 0.097 3.903 24 N -0.471 5.471 25 C 0.096 3.904 26 C -0.114 4.114 27 N -0.490 5.490 28 H 0.258 0.742 29 H 0.386 0.614 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.157 0.843 33 H 0.404 0.596 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.402 0.598 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -24.061 4.222 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.069 3.931 11 C 0.055 3.945 12 C -0.240 4.240 13 C 0.167 3.833 14 O -0.280 6.280 15 N -0.258 5.258 16 C 0.044 3.956 17 C 0.071 3.929 18 N -0.363 5.363 19 C 0.347 3.653 20 O -0.399 6.399 21 C -0.094 4.094 22 C -0.162 4.162 23 C -0.060 4.060 24 N -0.180 5.180 25 C -0.060 4.060 26 C -0.135 4.135 27 N -0.207 5.207 28 H 0.067 0.933 29 H 0.220 0.780 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.263 0.737 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.237 0.763 37 H 0.156 0.844 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.837 -24.189 5.754 25.025 hybrid contribution 0.488 1.455 -1.730 2.312 sum 3.325 -22.734 4.024 23.326 Atomic orbital electron populations 1.69672 1.05241 1.26008 1.56738 1.24799 0.95564 0.97888 1.02317 0.86122 0.78645 0.83393 0.77563 1.21555 1.21647 1.20575 1.19184 0.91100 0.83447 1.44017 0.90728 1.42173 1.05880 0.98856 1.89836 1.19711 0.90779 0.82394 1.00219 1.22225 0.92304 0.93301 0.86638 1.22998 0.99724 0.99297 1.01971 1.19363 0.88372 0.90588 0.85012 1.84771 1.57565 1.49504 1.36169 1.67658 1.26642 1.32835 0.98650 1.22637 0.91050 0.89121 0.92767 1.19944 0.93526 0.91278 0.88163 1.45669 1.29255 1.39413 1.21967 1.18091 0.84970 0.81542 0.80661 1.90815 1.27122 1.62922 1.59067 1.20342 0.95766 0.97096 0.96222 1.22371 0.94710 0.98241 1.00858 1.22780 0.98839 0.92598 0.91743 1.67578 1.17060 1.26192 1.07184 1.22856 0.89750 0.94094 0.99343 1.22359 1.00813 0.95451 0.94858 1.68195 1.10221 1.11105 1.31139 0.93263 0.78048 0.93830 0.93459 0.82505 0.73708 0.87753 0.88263 0.76335 0.84416 0.81994 0.81841 0.83203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -17.82 5.59 -61.08 -0.34 -18.16 16 10 C 0.20 3.72 6.61 -5.20 -0.03 3.68 16 11 C 0.20 3.31 6.19 -82.31 -0.51 2.81 16 12 C -0.22 -3.04 9.79 -39.16 -0.38 -3.43 16 13 C 0.35 4.74 7.83 -16.70 -0.13 4.61 16 14 O -0.47 -5.13 13.57 -18.22 -0.25 -5.37 16 15 N -0.53 -7.54 10.36 -10.79 -0.11 -7.65 16 16 C 0.31 4.52 7.01 -157.23 -1.10 3.41 16 17 C 0.20 2.46 6.10 -5.19 -0.03 2.43 16 18 N -0.71 -7.49 5.51 -62.33 -0.34 -7.84 16 19 C 0.56 6.49 7.80 -12.19 -0.10 6.39 16 20 O -0.52 -7.74 16.45 5.36 0.09 -7.65 16 21 C -0.08 -0.78 5.91 -104.65 -0.62 -1.39 16 22 C -0.14 -1.02 9.62 -39.02 -0.38 -1.40 16 23 C 0.10 0.70 11.17 -17.60 -0.20 0.50 16 24 N -0.47 -4.14 10.33 -13.31 -0.14 -4.28 16 25 C 0.10 0.73 11.17 -17.59 -0.20 0.54 16 26 C -0.11 -0.97 9.68 -39.02 -0.38 -1.35 16 27 N -0.49 -8.08 10.27 -7.05 -0.07 -8.15 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 29 H 0.39 10.37 7.66 -40.82 -0.31 10.06 16 30 H 0.04 0.75 8.06 -51.93 -0.42 0.34 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.40 1.97 9.06 45.56 0.41 2.39 16 34 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.40 3.42 6.61 -40.82 -0.27 3.15 16 37 H 0.14 0.68 6.54 -52.48 -0.34 0.34 16 38 H 0.16 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.15 1.19 7.74 -52.49 -0.41 0.78 16 LS Contribution 360.80 15.07 5.44 5.44 Total: -1.00 -35.70 360.80 -7.75 -43.45 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -3.42 Total: 10.89 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -4.30 Total: 9.62 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -0.28 Total: -73.27 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.16 Total: -13.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.70 -7.75 -43.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691414993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.790 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds