Wall clock time and date at job start Tue Mar 31 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48508 * 109.46718 * 239.99978 * 3 2 1 5 5 H 1.48503 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47473 * 119.99811 * 3 2 1 7 7 C 1.38962 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99313 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00092 * 359.72242 * 7 2 1 10 10 C 1.34768 * 119.99652 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00508 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99765 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47111 * 179.97438 * 12 10 9 14 14 C 1.48277 * 110.99685 * 184.13099 * 13 12 10 15 15 C 1.55965 * 105.09334 * 121.26864 * 14 13 12 16 16 H 1.09000 * 116.58925 * 159.96837 * 15 14 13 17 17 C 1.58965 * 98.88041 * 34.38592 * 15 14 13 18 18 C 1.49701 * 111.00028 * 301.73058 * 13 12 10 19 19 H 1.09002 * 116.16760 * 76.14143 * 18 13 12 20 20 C 1.56022 * 104.08469 * 306.98627 * 18 13 12 21 21 N 1.47863 * 105.11546 * 288.80371 * 20 18 13 22 22 C 1.34772 * 126.92720 * 181.93432 * 21 20 18 23 23 O 1.21284 * 119.99561 * 179.97438 * 22 21 20 24 24 C 1.50697 * 120.00210 * 359.97438 * 22 21 20 25 25 H 1.08996 * 115.54905 * 325.58159 * 24 22 21 26 26 C 1.52998 * 117.49898 * 179.90996 * 24 22 21 27 27 C 1.52996 * 117.49829 * 111.25125 * 24 22 21 28 28 F 1.39900 * 117.49844 * 214.97815 * 27 24 22 29 29 F 1.39903 * 117.50101 * 359.97438 * 27 24 22 30 30 H 0.96999 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99899 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46826 * 299.99988 * 12 10 9 33 33 H 1.08998 * 109.46846 * 59.99930 * 12 10 9 34 34 H 1.09004 * 110.32437 * 241.43934 * 14 13 12 35 35 H 1.08998 * 110.32893 * 3.64338 * 14 13 12 36 36 H 1.08997 * 112.07355 * 190.76072 * 17 15 14 37 37 H 1.09000 * 113.29461 * 62.79608 * 17 15 14 38 38 H 1.09006 * 110.31318 * 47.71641 * 20 18 13 39 39 H 1.09004 * 110.31227 * 169.79094 * 20 18 13 40 40 H 1.09005 * 117.49756 * 0.02562 * 26 24 22 41 41 H 1.09000 * 117.49776 * 144.99459 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6962 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6964 1.2124 7 6 2.0088 -1.2035 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3908 0.0068 10 6 1.9971 -3.5579 0.0079 11 8 3.2100 -3.5580 0.0028 12 6 1.2435 -4.8630 0.0142 13 7 2.1981 -5.9796 0.0135 14 6 1.4934 -7.2809 -0.0801 15 6 2.0526 -7.9536 -1.3714 16 1 1.9301 -9.0338 -1.4510 17 6 3.5463 -7.4143 -1.3019 18 6 3.1008 -5.9130 -1.1788 19 1 3.8978 -5.1705 -1.1374 20 6 2.1230 -5.8090 -2.3901 21 7 1.4971 -7.1444 -2.4962 22 6 0.6050 -7.5494 -3.4217 23 8 0.1704 -8.6812 -3.3904 24 6 0.1476 -6.5959 -4.4953 25 1 0.0665 -5.5517 -4.1932 26 6 -0.8647 -7.1162 -5.5177 27 6 0.5907 -6.8836 -5.9311 28 9 0.8602 -5.7863 -6.7561 29 9 1.3899 -8.0114 -6.1469 30 1 -0.4850 0.8400 -0.0004 31 1 0.3532 -2.3907 0.0105 32 1 0.6199 -4.9181 0.9065 33 1 0.6138 -4.9232 -0.8735 34 1 1.6970 -7.8861 0.8034 35 1 0.4208 -7.1235 -0.1930 36 1 4.0956 -7.6096 -2.2228 37 1 4.0887 -7.7592 -0.4215 38 1 1.3644 -5.0495 -2.2000 39 1 2.6730 -5.5736 -3.3013 40 1 -1.2001 -8.1481 -5.4136 41 1 -1.6118 -6.4144 -5.8883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692362479.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:17 Heat of formation + Delta-G solvation = -79.043350 kcal Electronic energy + Delta-G solvation = -29080.158475 eV Core-core repulsion = 24633.815164 eV Total energy + Delta-G solvation = -4446.343311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.98733 -47.65779 -41.30904 -39.23438 -37.91618 -35.78217 -34.27697 -33.68955 -31.49552 -30.95871 -29.80308 -26.69520 -25.72583 -24.59453 -23.86339 -22.87704 -21.20942 -20.63401 -19.42729 -18.96814 -18.32906 -17.90580 -17.43110 -16.99004 -16.45026 -16.20425 -16.03778 -15.58192 -15.03245 -14.66473 -14.44009 -14.28549 -14.06658 -13.90088 -13.86831 -13.74314 -13.44839 -13.20548 -12.81638 -12.63692 -12.45750 -12.10578 -11.91526 -11.67536 -11.58063 -11.45219 -11.39297 -11.23121 -11.04641 -10.95028 -10.58864 -10.49566 -10.28753 -10.13131 -9.56161 -8.86223 -8.46778 -8.09487 -8.00819 -6.49498 -3.90743 1.86806 2.46749 2.69692 3.08198 3.14546 3.21674 3.25284 3.77736 3.81988 3.83363 3.91559 4.14405 4.23233 4.29793 4.43415 4.53398 4.63510 4.91505 4.98156 5.07844 5.13552 5.19772 5.23490 5.35125 5.39605 5.43357 5.55690 5.70348 5.71225 5.80810 5.84359 5.97004 6.05139 6.15785 6.33114 6.90141 7.07864 7.27765 7.47679 7.82776 7.97018 8.51783 9.09426 9.44470 9.95141 10.67847 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.003645 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.297481 B = 7679.929634 C = 9028.984985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.580 6.580 12 C 0.030 3.970 13 N -0.492 5.492 14 C 0.026 3.974 15 C 0.108 3.892 16 H 0.127 0.873 17 C -0.137 4.137 18 C 0.073 3.927 19 H 0.158 0.842 20 C 0.052 3.948 21 N -0.610 5.610 22 C 0.564 3.436 23 O -0.532 6.532 24 C -0.193 4.193 25 H 0.150 0.850 26 C -0.139 4.139 27 C 0.223 3.777 28 F -0.152 7.152 29 F -0.152 7.152 30 H 0.273 0.727 31 H 0.392 0.608 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -13.953 -7.771 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.227 3.773 11 O -0.465 6.465 12 C -0.102 4.102 13 N -0.216 5.216 14 C -0.103 4.103 15 C 0.005 3.995 16 H 0.144 0.856 17 C -0.176 4.176 18 C -0.035 4.035 19 H 0.175 0.825 20 C -0.071 4.071 21 N -0.344 5.344 22 C 0.351 3.649 23 O -0.409 6.409 24 C -0.215 4.215 25 H 0.167 0.833 26 C -0.177 4.177 27 C 0.186 3.814 28 F -0.133 7.133 29 F -0.132 7.132 30 H 0.083 0.917 31 H 0.225 0.775 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.154 0.846 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.969 -14.347 -7.353 16.151 hybrid contribution -0.706 1.160 -0.859 1.607 sum -1.675 -13.187 -8.212 15.625 Atomic orbital electron populations 1.69595 1.05980 1.28408 1.50127 1.25267 0.95611 0.99768 0.97095 0.85922 0.78800 0.80420 0.79128 1.19866 1.20960 1.19830 1.19651 0.93349 0.82117 1.47959 0.87855 1.41858 1.09192 1.04607 1.63944 1.19626 0.88354 0.84448 0.84912 1.90463 1.13582 1.86824 1.55639 1.22237 0.94730 0.91583 1.01634 1.64742 1.16791 1.00122 1.39970 1.23734 0.97673 0.91930 0.96971 1.24380 0.93492 0.96650 0.84966 0.85572 1.24342 0.94727 0.95501 1.03016 1.24916 0.95523 0.97659 0.85395 0.82527 1.23531 0.98123 0.83973 1.01505 1.49128 1.42041 1.14703 1.28518 1.18735 0.78447 0.86829 0.80847 1.90713 1.56373 1.19611 1.74224 1.23724 1.04111 1.03451 0.90219 0.83261 1.24322 0.90705 1.06542 0.96105 1.19650 0.94302 0.76833 0.90611 1.93078 1.94969 1.52043 1.73186 1.93075 1.75364 1.49360 1.95394 0.91727 0.77509 0.89127 0.92991 0.88789 0.92316 0.90090 0.88199 0.89602 0.90687 0.84610 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.57 13.05 55.50 0.72 -22.84 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.30 -7.96 9.68 -14.93 -0.14 -8.11 16 8 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 9 N -0.56 -13.30 5.29 -10.96 -0.06 -13.36 16 10 C 0.44 9.55 7.37 -10.99 -0.08 9.47 16 11 O -0.58 -14.16 13.56 5.54 0.08 -14.08 16 12 C 0.03 0.49 4.65 -4.97 -0.02 0.47 16 13 N -0.49 -7.46 5.16 -218.20 -1.13 -8.59 16 14 C 0.03 0.32 6.30 -1.48 -0.01 0.31 16 15 C 0.11 1.27 5.26 -61.48 -0.32 0.95 16 16 H 0.13 1.40 8.06 -51.93 -0.42 0.98 16 17 C -0.14 -1.57 6.93 -21.20 -0.15 -1.71 16 18 C 0.07 1.05 4.11 -62.31 -0.26 0.79 16 19 H 0.16 2.66 6.37 -51.93 -0.33 2.33 16 20 C 0.05 0.70 5.43 -1.68 -0.01 0.69 16 21 N -0.61 -7.87 2.98 -155.63 -0.46 -8.34 16 22 C 0.56 7.62 7.31 -10.99 -0.08 7.54 16 23 O -0.53 -8.44 16.60 5.55 0.09 -8.35 16 24 C -0.19 -2.12 5.57 -91.78 -0.51 -2.63 16 25 H 0.15 1.47 7.87 -51.93 -0.41 1.06 16 26 C -0.14 -1.22 10.02 -26.70 -0.27 -1.49 16 27 C 0.22 2.51 5.20 -26.70 -0.14 2.38 16 28 F -0.15 -1.80 17.60 2.25 0.04 -1.76 16 29 F -0.15 -2.00 17.13 2.25 0.04 -1.96 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.39 8.99 7.90 -40.82 -0.32 8.66 16 32 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.05 0.80 5.65 -51.93 -0.29 0.50 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.24 5.16 -51.93 -0.27 0.97 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.14 1.22 7.67 -51.93 -0.40 0.82 16 41 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -30.69 346.21 -7.46 -38.15 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.88 Total: 11.47 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.09 Total: 9.18 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.92 Total: -53.13 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.17 Total: -22.43 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.08 Total: -3.72 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.69 -7.46 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362479.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.895 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds